Strain identifier

BacDive ID: 137715

Type strain: No

Species: Microbacterium oxydans

Strain history: CIP <- 1987, Lab. Ident. Inst. Pasteur, Paris, France: strain 43.87, Microbacterium liquefaciens <- Private Lab., France

NCBI tax ID(s): 82380 (species)

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General

@ref: 38608

BacDive-ID: 137715

keywords: Bacteria, obligate aerobe, mesophilic, Gram-positive, motile, rod-shaped

description: Microbacterium oxydans CIP 102791 is an obligate aerobe, mesophilic, Gram-positive bacterium of the family Microbacteriaceae.

NCBI tax id

  • NCBI tax id: 82380
  • Matching level: species

strain history

  • @ref: 38608
  • history: CIP <- 1987, Lab. Ident. Inst. Pasteur, Paris, France: strain 43.87, Microbacterium liquefaciens <- Private Lab., France

doi: 10.13145/bacdive137715.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Microbacterium
  • species: Microbacterium oxydans
  • full scientific name: Microbacterium oxydans (Chatelain and Second 1966) Schumann et al. 1999

  • synonyms

    • @ref: 20215
    • synonym: Brevibacterium oxydans

@ref: 38608

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Microbacteriaceae

genus: Microbacterium

species: Microbacterium oxydans

type strain: no

Morphology

cell morphology

  • @ref: 38608
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 38608
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38608MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
38608CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29
38608CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperature
38608positivegrowth30
38608positivegrowth10-37
38608nogrowth41
38608nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 38608
  • oxygen tolerance: obligate aerobe

halophily

  • @ref: 38608
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3860816947citrate-carbon source
386084853esculin+hydrolysis
38608606565hippurate+hydrolysis
3860817632nitrate-reduction
3860816301nitrite-reduction
3860817632nitrate-respiration
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
6837115443inulin-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
683714853esculin+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837117266L-sorbose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837130849L-arabinose-builds acid from
6837117113erythritol-builds acid from

metabolite production

  • @ref: 38608
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3860815688acetoin-
3860817234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase+3.2.1.51
68382alpha-mannosidase+3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382alpha-chymotrypsin+3.4.21.1
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382esterase lipase (C 8)+
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
38608oxidase-
38608beta-galactosidase+3.2.1.23
38608alcohol dehydrogenase-1.1.1.1
38608gelatinase+
38608amylase-
38608DNase+
38608caseinase+3.4.21.50
38608catalase+1.11.1.6
38608tween esterase-
38608gamma-glutamyltransferase-2.3.2.2
38608lecithinase+
38608lipase-
38608lysine decarboxylase-4.1.1.18
38608ornithine decarboxylase-4.1.1.17
38608phenylalanine ammonia-lyase-4.3.1.24
38608protease+
38608tryptophan deaminase-
38608urease-3.5.1.5
68382beta-glucuronidase-3.2.1.31
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382trypsin+3.4.21.4

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
38608--++-+--++++-+-+++++

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
38608+/--+/--+/-----+/-+/-+/-+/--+/---+/---+/-+/-+/-+/-++/-+/-+/---+/-+/--+/----+/-+/-+/----------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
38608+++++--+-++----+++++--++++--+--+-+++--+--------------++-+-+++++---------++-+-++-------+++++++++-++-

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
38608MontrougeFranceFRAEurope
38608MontrougeFranceFRAEuropeHuman, Epidermoid cyst1987

Safety information

risk assessment

  • @ref: 38608
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 38608

culture collection no.: CIP 102791

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38608Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102791Collection of Institut Pasteur (CIP 102791)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym