Strain identifier
BacDive ID: 137703
Type strain:
Species: Escherichia coli
Strain Designation: B6914-MS1 (3417-86)
Strain history: CIP <- 1999, ATCC <- CDC: strain B6914-MS1 (3417-86)
NCBI tax ID(s): 562 (species)
General
@ref: 38592
BacDive-ID: 137703
keywords: genome sequence, Bacteria, facultative anaerobe, mesophilic, motile
description: Escherichia coli B6914-MS1 is a facultative anaerobe, mesophilic, motile bacterium that was isolated from Human feces.
NCBI tax id
- NCBI tax id: 562
- Matching level: species
strain history
- @ref: 38592
- history: CIP <- 1999, ATCC <- CDC: strain B6914-MS1 (3417-86)
doi: 10.13145/bacdive137703.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Escherichia
- species: Escherichia coli
- full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus coli
@ref: 38592
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Escherichia
species: Escherichia coli
strain designation: B6914-MS1 (3417-86)
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 97.268 | ||
69480 | 99.978 | negative | ||
38592 | yes | negative | rod-shaped |
colony morphology
- @ref: 38592
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
38592 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
38592 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 | |
38592 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
38592 | positive | growth | 30 | mesophilic |
38592 | positive | growth | 30-41 | |
38592 | no | growth | 5 | psychrophilic |
38592 | no | growth | 10 | psychrophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 38592
- oxygen tolerance: facultative anaerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.615 |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | + | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | + | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | + | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | sucrose | + | builds acid from | 17992 |
68371 | melibiose | + | builds acid from | 28053 |
68371 | lactose | + | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-mannitol | + | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | + | builds acid from | 16813 |
68371 | L-rhamnose | + | builds acid from | 62345 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | + | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | + | builds acid from | 30849 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | + | builds acid from | 17754 |
68368 | L-arabinose | + | fermentation | 30849 |
68368 | amygdalin | - | fermentation | 27613 |
68368 | melibiose | + | fermentation | 28053 |
68368 | sucrose | + | fermentation | 17992 |
68368 | L-rhamnose | + | fermentation | 62345 |
68368 | sorbitol | - | fermentation | 30911 |
68368 | myo-inositol | - | fermentation | 17268 |
68368 | D-mannitol | + | fermentation | 16899 |
68368 | D-glucose | + | fermentation | 17634 |
68368 | gelatin | - | hydrolysis | 5291 |
68368 | tryptophan | + | energy source | 27897 |
68368 | urea | - | hydrolysis | 16199 |
68368 | citrate | - | assimilation | 16947 |
68368 | ornithine | + | degradation | 18257 |
68368 | lysine | + | degradation | 25094 |
68368 | arginine | - | hydrolysis | 29016 |
38592 | mannitol | + | fermentation | 29864 |
38592 | citrate | - | carbon source | 16947 |
38592 | esculin | - | hydrolysis | 4853 |
38592 | glucose | + | fermentation | 17234 |
38592 | lactose | + | fermentation | 17716 |
38592 | nitrate | + | reduction | 17632 |
38592 | nitrite | + | reduction | 16301 |
38592 | malonate | - | assimilation | 15792 |
38592 | sodium thiosulfate | - | builds gas from | 132112 |
38592 | glucose | + | degradation | 17234 |
68374 | ornithine | + | degradation | 18257 |
68374 | arginine | - | hydrolysis | 29016 |
68374 | lysine | + | degradation | 25094 |
68374 | urea | - | hydrolysis | 16199 |
68374 | L-arabitol | - | builds acid from | 18403 |
68374 | D-galacturonic acid | + | builds acid from | 18024 |
68374 | Potassium 5-ketogluconate | - | builds acid from | |
68374 | D-mannitol | + | builds acid from | 16899 |
68374 | maltose | + | builds acid from | 17306 |
68374 | ribitol | - | builds acid from | 15963 |
68374 | palatinose | - | builds acid from | 18394 |
68374 | malonate | - | assimilation | 15792 |
68374 | tryptophan | + | energy source | 27897 |
68374 | D-glucose | + | builds acid from | 17634 |
68374 | sucrose | - | builds acid from | 17992 |
68374 | L-arabinose | + | builds acid from | 30849 |
68374 | D-arabitol | - | builds acid from | 18333 |
68374 | trehalose | + | builds acid from | 27082 |
68374 | L-rhamnose | + | builds acid from | 62345 |
68374 | myo-inositol | - | builds acid from | 17268 |
68374 | cellobiose | - | builds acid from | 17057 |
68374 | sorbitol | - | builds acid from | 30911 |
antibiotic resistance
- @ref: 38592
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68374 | 35581 | indole | yes |
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | yes |
68368 | 16136 | hydrogen sulfide | no |
38592 | 35581 | indole | yes |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test | methylred-test |
---|---|---|---|---|---|
68374 | 35581 | indole | + | ||
68368 | 15688 | acetoin | - | ||
68368 | 35581 | indole | + | ||
38592 | 15688 | acetoin | - | ||
38592 | 17234 | glucose | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68374 | L-aspartate arylamidase | - | 3.4.11.21 |
68374 | alpha-maltosidase | - | |
68374 | alpha-galactosidase | + | 3.2.1.22 |
68374 | alpha-glucosidase | - | 3.2.1.20 |
68374 | beta-galactosidase | + | 3.2.1.23 |
68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68374 | beta-glucuronidase | - | 3.2.1.31 |
68374 | beta-glucosidase | - | 3.2.1.21 |
68374 | lipase | - | |
68374 | urease | - | 3.5.1.5 |
68374 | lysine decarboxylase | + | 4.1.1.18 |
68374 | arginine dihydrolase | - | 3.5.3.6 |
68374 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
38592 | oxidase | - | |
38592 | beta-galactosidase | + | 3.2.1.23 |
38592 | alcohol dehydrogenase | - | 1.1.1.1 |
38592 | gelatinase | - | |
38592 | catalase | + | 1.11.1.6 |
38592 | lysine decarboxylase | + | 4.1.1.18 |
38592 | ornithine decarboxylase | + | 4.1.1.17 |
38592 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
38592 | tryptophan deaminase | - | |
38592 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
49536 | - | + | - | - | - | + | - | - | - | - | + | + | - | + | - | + | - | - | - | - |
38592 | - | + | + | + | - | + | + | - | + | - | + | + | + | + | - | + | - | - | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
49536 | + | - | + | + | - | - | - | - | + | - | - | + | + | - | - | + | + | + | - | + | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
38592 | + | - | +/- | + | + | + | - | - | - | + | + | + | + | +/- | + | + | - | + | +/- | - | - | + | - | - | +/- | - | - | + | + | + | + | + | - | - | + | - | - | - | +/- | - | - | - | - | + | - | - | + | - | - |
API ID32E
@ref | ODC | ADH Arg | LDC Lys | URE | LARL | GAT | 5KG | LIP | RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | beta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alphaMAL | AspA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
49536 | + | - | + | - | - | + | - | - | - | - | + | + | - | - | - | - | + | - | + | + | - | + | - | - | + | + | + | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
38592 | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | - | - | + | - | + | + | + | - | + | + | - | - | - | - | + | - | + | - | + | - | - | + | - | - | + | - | - | - | + | + | - | - | + | + | + | - | - | - | - | + | + | - | - | - | + | + | - | - | - | - | + | + | - | + | + | - | - | - | - | - | + | - | - | - | + | + | - | - | - | - | - | + | - | - | + | + | + | + | + | + | - | + | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | sampling date | country | origin.country | continent |
---|---|---|---|---|---|
49536 | Human feces | 1986 | USA | USA | North America |
38592 | Human, Feces |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Safety information
risk assessment
- @ref: 38592
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Escherichia coli O157:H7 ATCC 43888 | GCA_007922655 | complete | ncbi | 83334 |
66792 | Escherichia coli O157:H7 strain ATCC 43888 | 83334.297 | complete | patric | 83334 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 87.469 | no |
flagellated | no | 60.275 | no |
gram-positive | no | 97.969 | no |
anaerobic | no | 94.622 | no |
aerobic | yes | 83.434 | no |
halophile | no | 91.585 | no |
spore-forming | no | 93.894 | no |
glucose-util | yes | 94.435 | no |
thermophile | no | 99.178 | no |
glucose-ferment | yes | 93.016 | yes |
External links
@ref: 38592
culture collection no.: CIP 105917, ATCC 43888, CCUG 29188
straininfo link
- @ref: 94536
- straininfo: 42106
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
38592 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105917 | Collection of Institut Pasteur (CIP 105917) | |
49536 | Curators of the CCUG | https://www.ccug.se/strain?id=29188 | Culture Collection University of Gothenburg (CCUG) (CCUG 29188) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68368 | Automatically annotated from API 20E | |||
68371 | Automatically annotated from API 50CH acid | |||
68374 | Automatically annotated from API ID32E | |||
68382 | Automatically annotated from API zym | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
94536 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID42106.1 |