Strain identifier
BacDive ID: 137659
Type strain:
Species: Providencia alcalifaciens
Strain Designation: B 105
Strain history: CIP <- 1953, NCTC <- 1942, H.T. Findlay, RAMC, Tidworth, UK <- A. Sachs, RAMC, Knutsford, UK: strain B 105
NCBI tax ID(s): 126385 (species)
General
@ref: 38488
BacDive-ID: 137659
keywords: genome sequence, Bacteria, Gram-negative
description: Providencia alcalifaciens B 105 is a Gram-negative bacterium of the family Morganellaceae.
NCBI tax id
- NCBI tax id: 126385
- Matching level: species
strain history
- @ref: 38488
- history: CIP <- 1953, NCTC <- 1942, H.T. Findlay, RAMC, Tidworth, UK <- A. Sachs, RAMC, Knutsford, UK: strain B 105
doi: 10.13145/bacdive137659.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Morganellaceae
- genus: Providencia
- species: Providencia alcalifaciens
- full scientific name: Providencia alcalifaciens (de Salles Gomes 1944) Ewing 1962 (Approved Lists 1980)
synonyms
@ref synonym 20215 Eberthella alcalifaciens 20215 Bacillus inconstans 20215 Proteus inconstans
@ref: 38488
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Morganellaceae
genus: Providencia
species: Providencia alcalifaciens
strain designation: B 105
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 100
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
38488 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
38488 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
- @ref: 38488
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 90.36 |
69481 | no | 100 |
Isolation, sampling and environmental information
isolation
@ref | country | origin.country | continent | sample type |
---|---|---|---|---|
38488 | India | IND | Asia | |
38488 | India | IND | Asia | Dysenteria |
Safety information
risk assessment
- @ref: 38488
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Providencia alcalifaciens NCTC6344 | GCA_900455135 | contig | ncbi | 126385 |
66792 | Providencia alcalifaciens strain NCTC6344 | 126385.18 | wgs | patric | 126385 |
66792 | Providencia alcalifaciens NCTC 6344 | 2850114440 | draft | img | 126385 |
Genome-based predictions
predictions
@ref | trait | model | description | prediction | confidence | training_data |
---|---|---|---|---|---|---|
69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 100 | no |
69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.314 | no |
69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.36 | no |
69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 59.613 | no |
69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 99 | yes |
69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 71.594 | no |
External links
@ref: 38488
culture collection no.: CIP 53.43, NCTC 6344
straininfo link
- @ref: 94500
- straininfo: 69690
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
38488 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2053.43 | Collection of Institut Pasteur (CIP 53.43) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
94500 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID69690.1 |