Strain identifier

BacDive ID: 137585

Type strain: No

Species: Listeria monocytogenes

Strain Designation: 10

Strain history: CIP <- 1978, H. Seeliger, Würzburg, Germany: strain SLCC 2376 <- J. Donker-Voet, Inst. Vet. Bakteriol., Utrecht: strain 10

NCBI tax ID(s): 1639 (species)

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General

@ref: 38392

BacDive-ID: 137585

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive

description: Listeria monocytogenes 10 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from Chicken.

NCBI tax id

  • NCBI tax id: 1639
  • Matching level: species

strain history

@refhistory
67770CCM 5882 <-- H. P. R. Seeliger Li 2107 <-- J. Donker-Voet 10 <-- A. Nyfeldt <-- S. Paterson.
38392CIP <- 1978, H. Seeliger, Würzburg, Germany: strain SLCC 2376 <- J. Donker-Voet, Inst. Vet. Bakteriol., Utrecht: strain 10

doi: 10.13145/bacdive137585.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Listeriaceae
  • genus: Listeria
  • species: Listeria monocytogenes
  • full scientific name: Listeria monocytogenes (Murray et al. 1926) Pirie 1940 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacterium monocytogenes

@ref: 38392

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Listeriaceae

genus: Listeria

species: Listeria monocytogenes

strain designation: 10

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480positive100
38392positiverod-shapedyes

colony morphology

  • @ref: 38392
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38392MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
38392CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
38392positivegrowth30mesophilic
67770positivegrowth37mesophilic
38392positivegrowth10-41
38392nogrowth5psychrophilic
38392nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 38392
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.697

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol+builds acid from17151
68371glycogen-builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside+builds acid from320061
68371methyl alpha-D-mannoside+builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose+builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
38392esculin+hydrolysis4853
38392nitrate-reduction17632
38392nitrite-reduction16301
38392nitrate+respiration17632

metabolite production

  • @ref: 38392
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3839215688acetoin+
3839217234glucose+

enzymes

@refvalueactivityec
38392oxidase-
38392beta-galactosidase-3.2.1.23
38392alcohol dehydrogenase-1.1.1.1
38392catalase+1.11.1.6
38392lysine decarboxylase-4.1.1.18
38392ornithine decarboxylase-4.1.1.17
38392tryptophan deaminase-
38392urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
38392----------++---+++--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
38392+/----------+++-+----++++++++++/---+---+-++-----+/-----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
38392++-+-----+--------+----+--+-+--+---------+---------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
67770ChickenEnglandUnited KingdomGBREurope
38392Chicken

taxonmaps

  • @ref: 69479
  • File name: preview.99_769.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_32;96_57;97_60;98_65;99_769&stattab=map
  • Last taxonomy: Listeria
  • 16S sequence: LC504052
  • Sequence Identity:
  • Total samples: 23992
  • soil counts: 505
  • aquatic counts: 973
  • animal counts: 22181
  • plant counts: 333

Safety information

risk assessment

  • @ref: 38392
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Listeria monocytogenes JCM 7679 gene for 16S ribosomal RNA, partial sequence
  • accession: LC504052
  • length: 1472
  • database: ena
  • NCBI tax ID: 1639

Genome sequences

  • @ref: 66792
  • description: Listeria monocytogenes strain WSLC 1019
  • accession: 1639.1037
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 1639

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes51no
motileyes77.153no
gram-positiveyes93.83no
anaerobicno93.716no
aerobicno90.844no
halophileno55.718no
spore-formingno59.917no
thermophileno99.649no
glucose-utilyes85.151no
flagellatedno55.414no
glucose-fermentyes57.054no

External links

@ref: 38392

culture collection no.: CIP 78.39, ATCC 19116, CCM 5882, JCM 7679, SLCC 2376

straininfo link

  • @ref: 94444
  • straininfo: 46557

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11391477Listeria monocytogenes lineage group classification by MAMA-PCR of the listeriolysin gene.Jinneman KC, Hill WECurr Microbiol10.1007/s0028400102742001*Bacterial Toxins, *Bacterial Typing Techniques, Base Pair Mismatch, DNA Mutational Analysis, DNA Primers, Evolution, Molecular, Food Microbiology, Genes, Bacterial, Heat-Shock Proteins/*genetics, Hemolysin Proteins, Humans, Listeria monocytogenes/*classification/genetics/isolation & purification/pathogenicity, Listeriosis/microbiology, Polymerase Chain Reaction/*methodsPathogenicity
Biotechnology12870755A predictive model to determine the effects of temperature, sodium pyrophosphate, and sodium chloride on thermal inactivation of starved Listeria monocytogenes in pork slurry.Lihono MA, Mendonca AF, Dickson JS, Dixon PMJ Food Prot10.4315/0362-028x-66.7.12162003Animals, Colony Count, Microbial, Diphosphates/*pharmacology, Food Microbiology, *Hot Temperature, Kinetics, Listeria monocytogenes/drug effects/*growth & development, Manure/*microbiology, Models, Biological, Models, Theoretical, Sodium Chloride/*pharmacology, SwineStress
Biotechnology16335227[Evaluation of the antimicrobial action of honey against Staphylococcus aureus, Staphylococcus epidermidis, Pseudomonas aeruginosa, Escherichia coli, Salmonella enteritidis, Listeria monocytogenes and Aspergillus niger. Evaluation of its microbiological charge].Estrada H, Gamboa Mdel M, Arias ML, Chaves CArch Latinoam Nutr2005Anti-Bacterial Agents/*pharmacology, Colony Count, Microbial, *Food Microbiology, Gram-Negative Bacteria/*drug effects, Gram-Positive Bacteria/*drug effects, Honey/*microbiology, Microbial Sensitivity TestsPathogenicity
Cultivation19203811Effects of pH and oil-in-water emulsions on growth and physicochemical cell surface properties of Listeria monocytogenes: Impact on tolerance to the bactericidal activity of disinfectants.Naitali M, Dubois-Brissonnet F, Cuvelier G, Bellon-Fontaine MNInt J Food Microbiol10.1016/j.ijfoodmicro.2009.01.0082009Culture Media/*chemistry, Disinfectants/*pharmacology, Drug Resistance, Bacterial, Emulsions/*chemistry, Hydrogen-Ion Concentration, Listeria monocytogenes/*cytology/*drug effects, Quaternary Ammonium Compounds/pharmacology, *Surface Properties, Triazines/pharmacologyPathogenicity
Enzymology19256417[Microbiological contamination and antimicrobial activity of cristalised cane sugar on some medically important microorganisms in Costa Rica].Pujol V, Diaz J, Rodriguez E, Arias MLRev Biol Trop2008Anti-Bacterial Agents/*pharmacology, Clostridium botulinum/*isolation & purification, Costa Rica, Dietary Sucrose/*pharmacology, Enterobacteriaceae/*isolation & purification, Food Microbiology, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/drug effects, Microbial Sensitivity Tests, Saccharum/chemistry/*microbiologyPhylogeny
Enzymology20934478Synergistic effect of nisin and cone essential oil of Metasequoia glyptostroboides Miki ex Hu against Listeria monocytogenes in milk samples.Yoon JI, Bajpai VK, Kang SCFood Chem Toxicol10.1016/j.fct.2010.10.0042010Animals, Drug Synergism, Listeria monocytogenes/*drug effects/isolation & purification, Milk/*microbiology, Nisin/*pharmacology, Oils, Volatile/*pharmacology, Tracheophyta/*chemistryPhylogeny
Pathogenicity21356455Combination treatment of alkaline electrolyzed water and citric acid with mild heat to ensure microbial safety, shelf-life and sensory quality of shredded carrots.Rahman SM, Jin YG, Oh DHFood Microbiol10.1016/j.fm.2010.10.0062010Anti-Infective Agents/*pharmacology, Bacteria/*drug effects/growth & development, Citric Acid/pharmacology, Colony Count, Microbial, Consumer Product Safety, Daucus carota/*microbiology/standards, Food Contamination/analysis/prevention & control, Food Handling/*methods, Food Microbiology, Food Preservation/methods, Hot Temperature, Humans, Hydrogen Peroxide, TasteBiotechnology
Biotechnology25149373Anti-listerial synergism of leaf essential oil of Metasequoia glyptostroboides with nisin in whole, low and skim milks.Bajpai VK, Yoon JI, Bhardwaj M, Kang SCAsian Pac J Trop Med10.1016/S1995-7645(14)60102-42014Animals, Anti-Bacterial Agents/chemistry/*pharmacology, Colony Count, Microbial, Cupressaceae/*chemistry, Food Microbiology, Listeria monocytogenes/*drug effects, Milk/*microbiology, Nisin/chemistry/*pharmacology, Oils, Volatile/chemistry/*pharmacology, Plant Extracts/chemistry/pharmacology, Plant Leaves/chemistryPathogenicity
Pathogenicity33494900Decreased biofilm formation by planktonic cells of Listeria monocytogenes in the presence of sodium hypochlorite.Bansal M, Dhowlaghar N, Nannapaneni R, Kode D, Chang S, Sharma CS, McDaniel C, Kiess AFood Microbiol10.1016/j.fm.2020.1037142020Biofilms/*drug effects, Disinfectants/*pharmacology, Listeria monocytogenes/*drug effects/growth & development, Plankton/drug effects/growth & development, Sodium Hypochlorite/*pharmacology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38392Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2078.39Collection of Institut Pasteur (CIP 78.39)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
94444Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID46557.1