Strain identifier

BacDive ID: 137585

Type strain: No

Species: Listeria monocytogenes

Strain Designation: 10

Strain history: CIP <- 1978, H. Seeliger, Würzburg, Germany: strain SLCC 2376 <- J. Donker-Voet, Inst. Vet. Bakteriol., Utrecht: strain 10

NCBI tax ID(s): 1639 (species)

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General

@ref: 38392

BacDive-ID: 137585

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, motile, rod-shaped

description: Listeria monocytogenes 10 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from Chicken.

NCBI tax id

  • NCBI tax id: 1639
  • Matching level: species

strain history

@refhistory
67770CCM 5882 <-- H. P. R. Seeliger Li 2107 <-- J. Donker-Voet 10 <-- A. Nyfeldt <-- S. Paterson.
38392CIP <- 1978, H. Seeliger, Würzburg, Germany: strain SLCC 2376 <- J. Donker-Voet, Inst. Vet. Bakteriol., Utrecht: strain 10

doi: 10.13145/bacdive137585.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Listeriaceae
  • genus: Listeria
  • species: Listeria monocytogenes
  • full scientific name: Listeria monocytogenes (Murray et al. 1926) Pirie 1940 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacterium monocytogenes

@ref: 38392

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Listeriaceae

genus: Listeria

species: Listeria monocytogenes

strain designation: 10

type strain: no

Morphology

cell morphology

  • @ref: 38392
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 38392
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38392MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
38392CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperature
38392positivegrowth30
67770positivegrowth37
38392positivegrowth10-41
38392nogrowth5
38392nogrowth45

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
38392facultative anaerobe
125439microaerophile92

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
383924853esculin+hydrolysis
3839217632nitrate-reduction
3839216301nitrite-reduction
3839217632nitrate+respiration
68371Potassium 5-ketogluconate-builds acid from
68371320061methyl alpha-D-glucopyranoside+builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol+builds acid from
6837128087glycogen-builds acid from
6837128017starch+builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin+builds acid from
683714853esculin+builds acid from
6837118305arbutin+builds acid from
6837127613amygdalin+builds acid from
6837159640N-acetylglucosamine+builds acid from
6837143943methyl alpha-D-mannoside+builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose+builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from

metabolite production

  • @ref: 38392
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3839215688acetoin+
3839217234glucose+

enzymes

@refvalueactivityec
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-glucosidase+3.2.1.20
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-chymotrypsin-3.4.21.1
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382valine arylamidase-
68382lipase (C 14)-
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382alkaline phosphatase-3.1.3.1
38392oxidase-
38392beta-galactosidase-3.2.1.23
38392alcohol dehydrogenase-1.1.1.1
38392catalase+1.11.1.6
38392lysine decarboxylase-4.1.1.18
38392ornithine decarboxylase-4.1.1.17
38392tryptophan deaminase-
38392urease-3.5.1.5
68382beta-glucuronidase-3.2.1.31
68382leucine arylamidase-3.4.11.1

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
38392----------++---+++--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
38392+/----------+++-+----++++++++++/---+---+-++-----+/-----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
38392++-+-----+--------+----+--+-+--+---------+---------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
67770ChickenEnglandUnited KingdomGBREurope
38392Chicken

taxonmaps

  • @ref: 69479
  • File name: preview.99_769.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_32;96_57;97_60;98_65;99_769&stattab=map
  • Last taxonomy: Listeria
  • 16S sequence: LC504052
  • Sequence Identity:
  • Total samples: 23992
  • soil counts: 505
  • aquatic counts: 973
  • animal counts: 22181
  • plant counts: 333

Safety information

risk assessment

  • @ref: 38392
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Listeria monocytogenes JCM 7679 gene for 16S ribosomal RNA, partial sequence
  • accession: LC504052
  • length: 1472
  • database: nuccore
  • NCBI tax ID: 1639

Genome sequences

  • @ref: 66792
  • description: Listeria monocytogenes strain WSLC 1019
  • accession: 1639.1037
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 1639

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes81.632no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no90.366no
125438spore-formingspore-formingAbility to form endo- or exosporesno51.139no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno95.434yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no86.455yes
125438motile2+flagellatedAbility to perform flagellated movementyes65.516no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno83.3
125439BacteriaNetmotilityAbility to perform movementno70.6
125439BacteriaNetgram_stainReaction to gram-stainingpositive72.3
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthmicroaerophile92

External links

@ref: 38392

culture collection no.: CIP 78.39, ATCC 19116, CCM 5882, JCM 7679, SLCC 2376

straininfo link

  • @ref: 94444
  • straininfo: 46557

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11391477Listeria monocytogenes lineage group classification by MAMA-PCR of the listeriolysin gene.Jinneman KC, Hill WECurr Microbiol10.1007/s0028400102742001*Bacterial Toxins, *Bacterial Typing Techniques, Base Pair Mismatch, DNA Mutational Analysis, DNA Primers, Evolution, Molecular, Food Microbiology, Genes, Bacterial, Heat-Shock Proteins/*genetics, Hemolysin Proteins, Humans, Listeria monocytogenes/*classification/genetics/isolation & purification/pathogenicity, Listeriosis/microbiology, Polymerase Chain Reaction/*methodsPathogenicity
Biotechnology12870755A predictive model to determine the effects of temperature, sodium pyrophosphate, and sodium chloride on thermal inactivation of starved Listeria monocytogenes in pork slurry.Lihono MA, Mendonca AF, Dickson JS, Dixon PMJ Food Prot10.4315/0362-028x-66.7.12162003Animals, Colony Count, Microbial, Diphosphates/*pharmacology, Food Microbiology, *Hot Temperature, Kinetics, Listeria monocytogenes/drug effects/*growth & development, Manure/*microbiology, Models, Biological, Models, Theoretical, Sodium Chloride/*pharmacology, SwineStress
Biotechnology16335227[Evaluation of the antimicrobial action of honey against Staphylococcus aureus, Staphylococcus epidermidis, Pseudomonas aeruginosa, Escherichia coli, Salmonella enteritidis, Listeria monocytogenes and Aspergillus niger. Evaluation of its microbiological charge].Estrada H, Gamboa Mdel M, Arias ML, Chaves CArch Latinoam Nutr2005Anti-Bacterial Agents/*pharmacology, Colony Count, Microbial, *Food Microbiology, Gram-Negative Bacteria/*drug effects, Gram-Positive Bacteria/*drug effects, Honey/*microbiology, Microbial Sensitivity TestsPathogenicity
Cultivation19203811Effects of pH and oil-in-water emulsions on growth and physicochemical cell surface properties of Listeria monocytogenes: Impact on tolerance to the bactericidal activity of disinfectants.Naitali M, Dubois-Brissonnet F, Cuvelier G, Bellon-Fontaine MNInt J Food Microbiol10.1016/j.ijfoodmicro.2009.01.0082009Culture Media/*chemistry, Disinfectants/*pharmacology, Drug Resistance, Bacterial, Emulsions/*chemistry, Hydrogen-Ion Concentration, Listeria monocytogenes/*cytology/*drug effects, Quaternary Ammonium Compounds/pharmacology, *Surface Properties, Triazines/pharmacologyPathogenicity
Enzymology19256417[Microbiological contamination and antimicrobial activity of cristalised cane sugar on some medically important microorganisms in Costa Rica].Pujol V, Diaz J, Rodriguez E, Arias MLRev Biol Trop2008Anti-Bacterial Agents/*pharmacology, Clostridium botulinum/*isolation & purification, Costa Rica, Dietary Sucrose/*pharmacology, Enterobacteriaceae/*isolation & purification, Food Microbiology, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/drug effects, Microbial Sensitivity Tests, Saccharum/chemistry/*microbiologyPhylogeny
Enzymology20934478Synergistic effect of nisin and cone essential oil of Metasequoia glyptostroboides Miki ex Hu against Listeria monocytogenes in milk samples.Yoon JI, Bajpai VK, Kang SCFood Chem Toxicol10.1016/j.fct.2010.10.0042010Animals, Drug Synergism, Listeria monocytogenes/*drug effects/isolation & purification, Milk/*microbiology, Nisin/*pharmacology, Oils, Volatile/*pharmacology, Tracheophyta/*chemistryPhylogeny
Pathogenicity21356455Combination treatment of alkaline electrolyzed water and citric acid with mild heat to ensure microbial safety, shelf-life and sensory quality of shredded carrots.Rahman SM, Jin YG, Oh DHFood Microbiol10.1016/j.fm.2010.10.0062010Anti-Infective Agents/*pharmacology, Bacteria/*drug effects/growth & development, Citric Acid/pharmacology, Colony Count, Microbial, Consumer Product Safety, Daucus carota/*microbiology/standards, Food Contamination/analysis/prevention & control, Food Handling/*methods, Food Microbiology, Food Preservation/methods, Hot Temperature, Humans, Hydrogen Peroxide, TasteBiotechnology
Biotechnology25149373Anti-listerial synergism of leaf essential oil of Metasequoia glyptostroboides with nisin in whole, low and skim milks.Bajpai VK, Yoon JI, Bhardwaj M, Kang SCAsian Pac J Trop Med10.1016/S1995-7645(14)60102-42014Animals, Anti-Bacterial Agents/chemistry/*pharmacology, Colony Count, Microbial, Cupressaceae/*chemistry, Food Microbiology, Listeria monocytogenes/*drug effects, Milk/*microbiology, Nisin/chemistry/*pharmacology, Oils, Volatile/chemistry/*pharmacology, Plant Extracts/chemistry/pharmacology, Plant Leaves/chemistryPathogenicity
Pathogenicity33494900Decreased biofilm formation by planktonic cells of Listeria monocytogenes in the presence of sodium hypochlorite.Bansal M, Dhowlaghar N, Nannapaneni R, Kode D, Chang S, Sharma CS, McDaniel C, Kiess AFood Microbiol10.1016/j.fm.2020.1037142020Biofilms/*drug effects, Disinfectants/*pharmacology, Listeria monocytogenes/*drug effects/growth & development, Plankton/drug effects/growth & development, Sodium Hypochlorite/*pharmacology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38392Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2078.39Collection of Institut Pasteur (CIP 78.39)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
94444Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID46557.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG