Strain identifier

BacDive ID: 137582

Type strain: No

Species: Histophilus somni

Strain Designation: 872

Strain history: CIP <- 1958, E.L. Biberstein, School Vet. Med., Davis, California, USA, "Haemophilus agni": strain 872

NCBI tax ID(s): 731 (species)

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General

@ref: 38387

BacDive-ID: 137582

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-negative, oval-shaped

description: Histophilus somni 872 is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Pasteurellaceae.

NCBI tax id

  • NCBI tax id: 731
  • Matching level: species

strain history

@refhistory
383871958, E.L. Biberstein, School Vet. Med., Davis, California, USA, "Haemophilus agni": strain 872
38387CIP <- 1958, E.L. Biberstein, School Vet. Med., Davis, California, USA, "Haemophilus agni": strain 872

doi: 10.13145/bacdive137582.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Histophilus
  • species: Histophilus somni
  • full scientific name: Histophilus somni Angen et al. 2003

@ref: 38387

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Histophilus

species: Histophilus somni

strain designation: 872

type strain: no

Morphology

cell morphology

  • @ref: 38387
  • gram stain: negative
  • cell shape: oval-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38387MEDIUM 5 - Columbia agar with 5 % globular extractyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g)
38387CIP Medium 5yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=5

culture temp

  • @ref: 38387
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 38387
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
38387nitrate+reduction17632
38387nitrite-reduction16301

metabolite production

  • @ref: 38387
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
38387oxidase-
38387beta-galactosidase-3.2.1.23
38387alcohol dehydrogenase-1.1.1.1
38387catalase-1.11.1.6
38387lysine decarboxylase-4.1.1.18
38387ornithine decarboxylase+4.1.1.17
38387urease-3.5.1.5

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
38387----------+++----++--+------------------------+-+

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
38387CaliforniaUSAUSANorth America
38387CaliforniaUnited States of AmericaUSANorth AmericaAnimal, Sheep1958

Safety information

risk assessment

  • @ref: 38387
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 38387

culture collection no.: CIP 58.63

straininfo link

  • @ref: 94441
  • straininfo: 68682

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38387Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2058.63Collection of Institut Pasteur (CIP 58.63)
68371Automatically annotated from API 50CH acid
94441Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID68682.1