Strain identifier
BacDive ID: 137575
Type strain:
Species: Gluconobacter thailandicus
Strain Designation: F149-1
Strain history: CIP <- 2005, JCM <- 2003, S. Tanasupawat: strain F149-1
NCBI tax ID(s): 1231357 (strain), 257438 (species)
General
@ref: 38308
BacDive-ID: 137575
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped
description: Gluconobacter thailandicus F149-1 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Acetobacteraceae.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1231357 | strain |
257438 | species |
strain history
@ref | history |
---|---|
67770 | S. Tanasupawat F149-1. |
38308 | CIP <- 2005, JCM <- 2003, S. Tanasupawat: strain F149-1 |
doi: 10.13145/bacdive137575.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Gluconobacter
- species: Gluconobacter thailandicus
- full scientific name: Gluconobacter thailandicus Tanasupawat et al. 2005
@ref: 38308
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Gluconobacter
species: Gluconobacter thailandicus
strain designation: F149-1
type strain: yes
Morphology
cell morphology
- @ref: 38308
- gram stain: negative
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
38308 | MEDIUM 314 - for Gluconacetobacter xylinus subsp. sucrofermentans | yes | Distilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (100.000 g);Yeast extract (10.000 g);Calcium carbonate (30.000 g) | |
38308 | CIP Medium 314 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=314 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
38308 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
38308 | positive | growth | 22-41 | |
38308 | no | growth | 10 | psychrophilic |
38308 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 38308
- oxygen tolerance: obligate aerobe
halophily
- @ref: 38308
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-10 %
observation
- @ref: 67770
- observation: quinones: Q-10
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
38308 | 606565 | hippurate | + | hydrolysis |
38308 | 17632 | nitrate | - | reduction |
38308 | 16301 | nitrite | - | reduction |
metabolite production
- @ref: 38308
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
38308 | oxidase | - | |
38308 | beta-galactosidase | - | 3.2.1.23 |
38308 | alcohol dehydrogenase | - | 1.1.1.1 |
38308 | gelatinase | + | |
38308 | catalase | + | 1.11.1.6 |
38308 | gamma-glutamyltransferase | + | 2.3.2.2 |
38308 | lysine decarboxylase | - | 4.1.1.18 |
38308 | ornithine decarboxylase | - | 4.1.1.17 |
38308 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | - | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
38308 | - | - | + | - | - | - | - | - | + | - | + | + | - | - | - | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | country | origin.country | continent | sample type | host species |
---|---|---|---|---|---|
38308 | Thailand | THA | Asia | ||
67770 | Thailand | THA | Asia | Flower of Indian cork tree (Millingtonia hortensis) collected in Bangkok | Millingtonia hortensis |
38308 | Thailand | THA | Asia | Flowers |
taxonmaps
- @ref: 69479
- File name: preview.99_1213.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_336;97_374;98_960;99_1213&stattab=map
- Last taxonomy: Gluconobacter
- 16S sequence: AB128050
- Sequence Identity:
- Total samples: 3822
- soil counts: 546
- aquatic counts: 376
- animal counts: 2369
- plant counts: 531
Safety information
risk assessment
- @ref: 38308
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 67770
- description: Gluconobacter thailandicus gene for 16S rRNA, partial sequence, strain:F149-1
- accession: AB128050
- length: 1441
- database: ena
- NCBI tax ID: 1231357
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Gluconobacter thailandicus F149-1 = NBRC 100600 | GCA_007990185 | contig | ncbi | 1231357 |
66792 | Gluconobacter thailandicus F149-1 = NBRC 100600 | GCA_000964465 | contig | ncbi | 1231357 |
66792 | Gluconobacter thailandicus LMG 23137 | GCA_001580935 | contig | ncbi | 257438 |
66792 | Gluconobacter thailandicus F149-1 = NBRC 100600 | 1231357.4 | wgs | patric | 1231357 |
66792 | Gluconobacter thailandicus F149-1 = NBRC 100600 | 1231357.3 | wgs | patric | 1231357 |
66792 | Gluconobacter thailandicus strain LMG 23137 | 257438.4 | wgs | patric | 257438 |
66792 | Gluconobacter thailandicus LMG 23137 | 2728368905 | draft | img | 257438 |
GC content
- @ref: 67770
- GC-content: 55.8
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 73.233 | no |
gram-positive | no | 96.687 | no |
anaerobic | no | 99.367 | no |
aerobic | yes | 89.831 | no |
halophile | no | 92.518 | no |
spore-forming | no | 93.787 | no |
thermophile | no | 97.33 | yes |
glucose-util | yes | 89.134 | no |
glucose-ferment | no | 89.986 | no |
flagellated | no | 82.73 | no |
External links
@ref: 38308
culture collection no.: CIP 108781, BCC 14116, NBRC 100600, PCU 225, TISTR 1533, JCM 12310, LMG 23137
straininfo link
- @ref: 94435
- straininfo: 138656
literature
- topic: Phylogeny
- Pubmed-ID: 15486825
- title: Gluconobacter thailandicus sp. nov., an acetic acid bacterium in the alpha-Proteobacteria.
- authors: Tanasupawat S, Thawai C, Yukphan P, Moonmangmee D, Itoh T, Adachi O, Yamada Y
- journal: J Gen Appl Microbiol
- DOI: 10.2323/jgam.50.159
- year: 2004
- mesh: Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Flowers/microbiology, Gluconobacter/classification/genetics/isolation & purification/*physiology, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Thailand
- topic2: Enzymology
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
38308 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108781 | Collection of Institut Pasteur (CIP 108781) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
94435 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID138656.1 |