Strain identifier
BacDive ID: 137566
Type strain:
Species: Vibrio atlanticus
Strain history: CIP <- 2002, D. Mazel, Inst. Pasteur, Paris, France: strain Mel 31, Vibrio lentus <- F. Leroux, IFREMER
NCBI tax ID(s): 29497 (species)
version 8.1 (current version)
General
@ref: 38225
BacDive-ID: 137566
keywords: Bacteria, mesophilic, Gram-negative, motile, rod-shaped
description: Vibrio atlanticus CIP 107716 is a mesophilic, Gram-negative, motile bacterium that was isolated from Hollow oyster, Cassostrea gigas.
NCBI tax id
- NCBI tax id: 29497
- Matching level: species
strain history
- @ref: 38225
- history: CIP <- 2002, D. Mazel, Inst. Pasteur, Paris, France: strain Mel 31, Vibrio lentus <- F. Leroux, IFREMER
doi: 10.13145/bacdive137566.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio atlanticus
- full scientific name: Vibrio atlanticus Diéguez et al. 2011
@ref: 38225
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales
family: Vibrionaceae
genus: Vibrio
species: Vibrio atlanticus
type strain: no
Morphology
cell morphology
- @ref: 38225
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
38225 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
38225 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
38225 | positive | growth | 25 | mesophilic |
38225 | positive | growth | 5-30 | |
38225 | no | growth | 37 | mesophilic |
38225 | no | growth | 41 | thermophilic |
Physiology and metabolism
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
38225 | NaCl | positive | growth | 2-8 % |
38225 | NaCl | no | growth | 0 % |
38225 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
38225 | 16947 | citrate | - | carbon source |
38225 | 4853 | esculin | - | hydrolysis |
38225 | 17632 | nitrate | + | reduction |
38225 | 16301 | nitrite | - | reduction |
38225 | 17234 | glucose | - | degradation |
metabolite production
- @ref: 38225
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
38225 | 15688 | acetoin | - | |
38225 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
38225 | oxidase | + | |
38225 | beta-galactosidase | - | 3.2.1.23 |
38225 | alcohol dehydrogenase | - | 1.1.1.1 |
38225 | gelatinase | +/- | |
38225 | amylase | + | |
38225 | caseinase | + | 3.4.21.50 |
38225 | catalase | + | 1.11.1.6 |
38225 | tween esterase | + | |
38225 | gamma-glutamyltransferase | + | 2.3.2.2 |
38225 | lecithinase | + | |
38225 | lipase | + | |
38225 | lysine decarboxylase | - | 4.1.1.18 |
38225 | ornithine decarboxylase | - | 4.1.1.17 |
38225 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
38225 | protease | + | |
38225 | tryptophan deaminase | - | |
38225 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
38225 | - | + | + | + | - | + | - | - | + | - | + | + | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
38225 | + | + | - | + | + | - | - | + | - | + | + | - | - | - | - | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | + | - | - | - | - | - | + | - | - | + | + | + | + | + | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 38225
- sample type: Hollow oyster, Cassostrea gigas
Safety information
risk assessment
- @ref: 38225
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
External links
@ref: 38225
culture collection no.: CIP 107716
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
38225 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107716 | Collection of Institut Pasteur (CIP 107716) | |
68382 | Automatically annotated from API zym |