Strain identifier

BacDive ID: 137548

Type strain: No

Species: Mycobacterium avium subsp. paratuberculosis

Strain Designation: 4138

Strain history: CIP <- 1994, JR. Stabel, USDA, Dayton, Ohio, USA: strain 4138

NCBI tax ID(s): 1770 (subspecies)

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General

@ref: 38172

BacDive-ID: 137548

keywords: Bacteria, obligate aerobe, mesophilic, rod-shaped

description: Mycobacterium avium subsp. paratuberculosis 4138 is an obligate aerobe, mesophilic, rod-shaped bacterium of the family Mycobacteriaceae.

NCBI tax id

  • NCBI tax id: 1770
  • Matching level: subspecies

strain history

@refhistory
381721994, J.R. Stabel, USDA, Dayton, IA, USA: strain 4138
38172CIP <- 1994, JR. Stabel, USDA, Dayton, Ohio, USA: strain 4138

doi: 10.13145/bacdive137548.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium avium subsp. paratuberculosis
  • full scientific name: Mycobacterium avium subsp. paratuberculosis (Bergey et al. 1923) Thorel et al. 1990

  • synonyms

    • @ref: 20215
    • synonym: Mycobacterium paratuberculosis

@ref: 38172

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium avium subsp. paratuberculosis

strain designation: 4138

type strain: no

Morphology

cell morphology

  • @ref: 38172
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38172MEDIUM 96 - for Mycobacterium avium subsp. paratuberculosisyesTween 80 (0.500 ml);Middlebrook 7H9 broth (4.700 g);Middelbrook OADC enrichment (100.000 ml);Distilled water (900.000 ml);Mycobactine (2.000 ml)
38172CIP Medium 96yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=96

culture temp

@refgrowthtypetemperature
38172positivegrowth37
38172positivegrowth30-37
38172nogrowth10
38172nogrowth22
38172nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 38172
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
38172606565hippurate-hydrolysis
3817217632nitrate-reduction
3817216301nitrite-reduction

metabolite production

  • @ref: 38172
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-glucosidase+3.2.1.20
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-galactosidase-3.2.1.22
68382acid phosphatase+3.1.3.2
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
38172oxidase-
38172beta-galactosidase-3.2.1.23
38172gelatinase-
38172catalase+1.11.1.6
38172gamma-glutamyltransferase+2.3.2.2
38172urease-3.5.1.5
68382beta-glucosidase-3.2.1.21
68382naphthol-AS-BI-phosphohydrolase+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
38172-+++-+----++---+----

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
38172ArgentinaARGMiddle and South America
38172ArgentinaARGMiddle and South AmericaCaprine, lymph node

Safety information

risk assessment

  • @ref: 38172
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 38172

culture collection no.: CIP 103978

straininfo link

  • @ref: 94416
  • straininfo: 69385

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38172Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103978Collection of Institut Pasteur (CIP 103978)
68382Automatically annotated from API zym
94416Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID69385.1