Strain identifier
BacDive ID: 13739
Type strain: 
Species: Rhodovulum adriaticum
Strain Designation: BN 721(6II)
Strain history: <- J.F. Imhoff, strain BN 721(6II)
NCBI tax ID(s): 35804 (species)
version 8.1 (current version)
General
@ref: 1223
BacDive-ID: 13739
DSM-Number: 2781
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative
description: Rhodovulum adriaticum BN 721 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from malo Jezero on Mljet.
NCBI tax id
- NCBI tax id: 35804
- Matching level: species
strain history
- @ref: 1223
- history: <- J.F. Imhoff, strain BN 721(6II)
doi: 10.13145/bacdive13739.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Rhodovulum
- species: Rhodovulum adriaticum
- full scientific name: Rhodovulum adriaticum (Neutzling et al. 1984) Hiraishi and Ueda 1994
synonyms
@ref synonym 20215 Rhodopseudomonas adriatica 20215 Rhodobacter adriaticus
@ref: 1223
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Rhodovulum
species: Rhodovulum adriaticum
full scientific name: Rhodovulum adriaticum (Neutzling et al. 1984) Hiraishi and Ueda 1994
strain designation: BN 721(6II)
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.998
Culture and growth conditions
culture medium
- @ref: 1223
- name: RHODOBACTER ADRIATICUS MEDIUM (DSMZ Medium 351)
- growth: yes
- link: https://mediadive.dsmz.de/medium/351
- composition: Name: RHODOBACTER ADRIATICUS MEDIUM (DSMZ Medium 351) Composition: NaCl 25.0 g/l NaHCO3 3.0 g/l K2HPO4 1.0 g/l NH4Cl 1.0 g/l Na acetate 0.82 g/l MgCl2 x 6 H2O 0.5 g/l Na-ascorbate 0.5 g/l Yeast extract 0.1 g/l CaCl2 x 2 H2O 0.1 g/l Na2S x 9 H2O 0.06 g/l FeCl2 x 4 H2O 0.0018 g/l H3BO3 0.0005 g/l Nicotinic acid amide 0.00035 g/l Thiamine-HCl x 2 H2O 0.0003 g/l CoCl2 x 6 H2O 0.00025 g/l p-Aminobenzoic acid 0.0002 g/l ZnCl2 0.0001 g/l Pyridoxal hydrochloride 0.0001 g/l Calcium pantothenate 0.0001 g/l Biotin 0.0001 g/l MnCl2 x 4 H2O 7e-05 g/l Vitamin B12 5e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l Na2SeO3 x 5 H2O 1e-05 g/l CuCl2 x 2 H2O 1e-05 g/l NiCl2 x 6 H2O 1e-05 g/l Distilled water
culture temp
- @ref: 1223
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 1223
- oxygen tolerance: anaerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 98 |
| 69480 | no | 99.937 |
Isolation, sampling and environmental information
isolation
- @ref: 1223
- sample type: malo Jezero on Mljet
- geographic location: Adriatic Sea
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Lake (large)
taxonmaps
- @ref: 69479
- File name: preview.99_13492.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_1479;97_1765;98_10190;99_13492&stattab=map
- Last taxonomy: Rhodovulum adriaticum subclade
- 16S sequence: D16418
- Sequence Identity:
- Total samples: 627
- soil counts: 10
- aquatic counts: 598
- animal counts: 14
- plant counts: 5
Safety information
risk assessment
- @ref: 1223
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Rhodovulum adriaticum 16S rRNA | D13476 | 1351 | ena | 35804 |
| 20218 | Rhodovulum adriaticum gene for 16S rRNA | D16418 | 1389 | ena | 35804 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhodovulum adriaticum DSM 2781 | GCA_004345735 | scaffold | ncbi | 35804 |
| 66792 | Rhodovulum adriaticum DSM 2781 | GCA_016583705 | scaffold | ncbi | 35804 |
| 66792 | Rhodovulum adriaticum strain DSM 2781 | 35804.6 | wgs | patric | 35804 |
| 66792 | Rhodovulum adriaticum strain DSM 2781 | 35804.4 | wgs | patric | 35804 |
| 66792 | Rhodovulum adriaticum DSM 2781 | 2795385465 | draft | img | 35804 |
GC content
- @ref: 1223
- GC-content: 66.7
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 98 | no |
| motile | yes | 62.927 | no |
| flagellated | no | 81.019 | no |
| gram-positive | no | 99.035 | no |
| anaerobic | yes | 87.907 | yes |
| aerobic | no | 93.347 | yes |
| halophile | yes | 63.362 | no |
| spore-forming | no | 95.912 | no |
| glucose-util | yes | 53.288 | no |
| thermophile | no | 92.784 | yes |
| glucose-ferment | no | 90.536 | no |
External links
@ref: 1223
culture collection no.: DSM 2781, ATCC 35885
straininfo link
- @ref: 82921
- straininfo: 41351
literature
- topic: Phylogeny
- Pubmed-ID: 22180610
- title: Rhodovulum bhavnagarense sp. nov., a phototrophic alphaproteobacterium isolated from a pink pond.
- authors: Srinivas A, Rahul K, Ramaprasad EVV, Sasikala C, Ramana CV
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.036152-0
- year: 2011
- mesh: Bacterial Typing Techniques, Bacteriochlorophyll A/analysis, Carotenoids/analysis, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/microbiology, India, Molecular Sequence Data, *Phylogeny, Ponds/*microbiology, RNA, Ribosomal, 16S/genetics, Rhodovulum/*classification/genetics/isolation & purification, Sequence Analysis, DNA
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1223 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2781) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2781 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 82921 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID41351.1 | StrainInfo: A central database for resolving microbial strain identifiers |