Strain identifier

BacDive ID: 137379

Type strain: Yes

Species: Zhouia amylolytica

Strain Designation: HN-171

Strain history: CIP <- 2007, JCM <- 2006, S. Liu, Chinese Academy Sciences, Beijing, China: strain HN-171

NCBI tax ID(s): 376730 (species)

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General

@ref: 37569

BacDive-ID: 137379

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Zhouia amylolytica HN-171 is a mesophilic, Gram-negative bacterium of the family Flavobacteriaceae.

NCBI tax id

  • NCBI tax id: 376730
  • Matching level: species

strain history

@refhistory
67770S. Liu HN-171.
37569CIP <- 2007, JCM <- 2006, S. Liu, Chinese Academy Sciences, Beijing, China: strain HN-171

doi: 10.13145/bacdive137379.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Zhouia
  • species: Zhouia amylolytica
  • full scientific name: Zhouia amylolytica Liu et al. 2006

@ref: 37569

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Zhouia

species: Zhouia amylolytica

strain designation: HN-171

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.994
37569negativerod-shapedyes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
37569Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
37569CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
37569positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.995

observation

  • @ref: 67770
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3756917632nitrate-reduction
3756916301nitrite+reduction

metabolite production

  • @ref: 37569
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
37569oxidase+
37569catalase+1.11.1.6
37569urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase+3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
37569-+++-++++-++++-+++++

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
37569South China seaChinaCHNAsia
67770ChinaCHNAsiaSediment from the South China Sea
37569China SeaChinaCHNAsiaEnvironment, Sea, sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_2749.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_230;96_1462;97_1744;98_2132;99_2749&stattab=map
  • Last taxonomy: Zhouia amylolytica subclade
  • 16S sequence: DQ423479
  • Sequence Identity:
  • Total samples: 2383
  • soil counts: 172
  • aquatic counts: 1797
  • animal counts: 392
  • plant counts: 22

Safety information

risk assessment

  • @ref: 37569
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Zhouia amylolytica strain HN-171 16S ribosomal RNA gene, partial sequence
  • accession: DQ423479
  • length: 1478
  • database: ena
  • NCBI tax ID: 376730

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Zhouia amylolytica strain CGMCC 1.6114376730.5wgspatric376730
66792Zhouia amylolytica CGMCC 1.61142619618939draftimg376730
67770Zhouia amylolytica CGMCC 1.6114GCA_900116365scaffoldncbi376730

GC content

  • @ref: 67770
  • GC-content: 34.5
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.179no
anaerobicno99.408no
halophileno61.917no
spore-formingno95.451no
glucose-utilyes89.256no
aerobicyes87.281no
motileno89.038no
flagellatedno95.341no
thermophileno98.539yes
glucose-fermentno88.923no

External links

@ref: 37569

culture collection no.: CIP 109486, JCM 14016, CGMCC 1.6114

straininfo link

  • @ref: 94292
  • straininfo: 297348

literature

  • topic: Phylogeny
  • Pubmed-ID: 17158983
  • title: Zhouia amylolytica gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from sediment of the South China Sea.
  • authors: Liu ZP, Wang BJ, Dai X, Liu XY, Liu SJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.64587-0
  • year: 2006
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification/physiology, Genes, rRNA, Geologic Sediments/*microbiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
37569Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109486Collection of Institut Pasteur (CIP 109486)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
94292Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID297348.1