Strain identifier

BacDive ID: 137371

Type strain: Yes

Species: Yersinia phocaeense

Strain history: CIP <- 2006, M. Drancourt, Timone Hosp., Marseille, France: strain 4237645, "Yersinia massiliensis"

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General

@ref: 37522

BacDive-ID: 137371

keywords: facultative anaerobe, mesophilic, Gram-negative, rod-shaped

description: Yersinia phocaeense CIP 109349 is a facultative anaerobe, mesophilic, Gram-negative prokaryote of the family Not assigned to family.

strain history

@refhistory
375222006, M. Drancourt, Timone Hosp., Marseille, France: strain 4237645, "Yersinia massiliensis"
37522CIP <- 2006, M. Drancourt, Timone Hosp., Marseille, France: strain 4237645, "Yersinia massiliensis"

doi: 10.13145/bacdive137371.20230509.8.1

Name and taxonomic classification

@ref: 37522

phylum: Not assigned to order

class: Not assigned to order

order: Not assigned to order

family: Not assigned to family

genus: Yersinia

species: Yersinia phocaeense

type strain: yes

Morphology

cell morphology

  • @ref: 37522
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 37522
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
37522MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
37522CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

  • @ref: 37522
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 37522
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose+builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol+builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose+builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
37522nitrate+reduction17632
37522nitrite-reduction16301

metabolite production

  • @ref: 37522
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

enzymes

@refvalueactivityec
37522oxidase-
37522catalase+1.11.1.6
37522urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
37522--+--+----++-+-+++--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
37522+--+++---+++++--+++--+-+++++--++------+----++-+-+

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
37522MarseilleFranceFRAEurope
37522MarseilleFranceFRAEuropeHuman, Faeces2004

Safety information

risk assessment

  • @ref: 37522
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 37522

culture collection no.: CIP 109349

Reference

@idauthorscataloguedoi/urltitle
37522Curators of the CIPCollection of Institut Pasteur (CIP 109349)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109349
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym