Strain identifier

BacDive ID: 137365

Type strain: Yes

Species: Paracoccus yeei

Strain Designation: G 1212

Strain history: CIP <- 2003, CCUG <- M.I. Daneshvar/L. Helsel, CDC, Atlanta, USA: strain G 1212 <- PHLS, Pennsylvania, USA

NCBI tax ID(s): 147645 (species)

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General

@ref: 37407

BacDive-ID: 137365

keywords: Bacteria, aerobe, mesophilic, Gram-negative, coccus-shaped

description: Paracoccus yeei G 1212 is an aerobe, mesophilic, Gram-negative bacterium of the family Paracoccaceae.

NCBI tax id

  • NCBI tax id: 147645
  • Matching level: species

strain history

  • @ref: 37407
  • history: CIP <- 2003, CCUG <- M.I. Daneshvar/L. Helsel, CDC, Atlanta, USA: strain G 1212 <- PHLS, Pennsylvania, USA

doi: 10.13145/bacdive137365.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Paracoccaceae
  • genus: Paracoccus
  • species: Paracoccus yeei
  • full scientific name: Paracoccus yeei corrig. Daneshvar et al. 2003

  • synonyms

    • @ref: 20215
    • synonym: Paracoccus yeeii

@ref: 37407

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Paracoccus

species: Paracoccus yeei

strain designation: G 1212

type strain: yes

Morphology

cell morphology

  • @ref: 37407
  • gram stain: negative
  • cell shape: coccus-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
37407MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
37407CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
37407CIP Medium 328yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=328

culture temp

@refgrowthtypetemperaturerange
37407positivegrowth37mesophilic
57359positivegrowth30-37mesophilic
37407positivegrowth25-41
37407nogrowth5psychrophilic
37407nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
57359aerobe
37407facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
37407NaClpositivegrowth0-6 %
37407NaClnogrowth8 %
37407NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
374074853esculin-hydrolysis
3740717632nitrate+reduction
3740716301nitrite+reduction
3740717632nitrate-respiration

antibiotic resistance

  • @ref: 37407
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 37407
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 37407
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
37407oxidase+
37407beta-galactosidase-3.2.1.23
37407alcohol dehydrogenase-1.1.1.1
37407gelatinase+/-
37407amylase-
37407DNase+
37407caseinase+3.4.21.50
37407catalase+1.11.1.6
37407tween esterase-
37407lecithinase+
37407lipase+
37407lysine decarboxylase-4.1.1.18
37407ornithine decarboxylase-4.1.1.17
37407protease+
37407tryptophan deaminase-
37407urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
37407-+++------++---+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
37407-------------------+----+--++--++----+------+---++--+-------+---+-----+++++------------------------

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typesampling dategeographic location
37407USAUSANorth America
57359USAUSANorth AmericaHuman abdominal dialysate,peritonitis,77-yr-old M1988Pennsylvania
37407United States of AmericaUSANorth AmericaHuman, Abdominal dialysate, peritonitis

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Other#Abdomen
#Host#Human#Male
#Infection#Inflammation
#Infection#Patient

Safety information

risk assessment

  • @ref: 37407
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 37407

culture collection no.: CIP 108092, CCUG 46822, ATCC BAA 599, CCM 7173

straininfo link

  • @ref: 94286
  • straininfo: 110799

literature

  • topic: Phylogeny
  • Pubmed-ID: 12624070
  • title: Paracoccus yeeii sp. nov. (formerly CDC group EO-2), a novel bacterial species associated with human infection.
  • authors: Daneshvar MI, Hollis DG, Weyant RS, Steigerwalt AG, Whitney AM, Douglas MP, Macgregor JP, Jordan JG, Mayer LW, Rassouli SM, Barchet W, Munro C, Shuttleworth L, Bernard K
  • journal: J Clin Microbiol
  • DOI: 10.1128/JCM.41.3.1289-1294.2003
  • year: 2003
  • mesh: DNA, Bacterial/analysis, Gram-Negative Bacterial Infections/*microbiology, Humans, Molecular Sequence Data, Paracoccus/*classification/genetics, Phenotype, Phylogeny, RNA, Ribosomal, 16S/*analysis/genetics
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
37407Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108092Collection of Institut Pasteur (CIP 108092)
57359Curators of the CCUGhttps://www.ccug.se/strain?id=46822Culture Collection University of Gothenburg (CCUG) (CCUG 46822)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
94286Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID110799.1