Strain identifier

BacDive ID: 137343

Type strain: Yes

Species: Polaribacter irgensii

Strain Designation: 23-P

Strain history: CIP <- 2000, JT. Staley, Washington Univ., Seattle, Washington, USA: strain 23-P

NCBI tax ID(s): 531 (species)

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General

@ref: 37300

BacDive-ID: 137343

keywords: Bacteria, psychrophilic, Gram-negative, oval-shaped

description: Polaribacter irgensii 23-P is a psychrophilic, Gram-negative, oval-shaped bacterium of the family Flavobacteriaceae.

NCBI tax id

  • NCBI tax id: 531
  • Matching level: species

strain history

  • @ref: 37300
  • history: CIP <- 2000, JT. Staley, Washington Univ., Seattle, Washington, USA: strain 23-P

doi: 10.13145/bacdive137343.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Polaribacter
  • species: Polaribacter irgensii
  • full scientific name: Polaribacter irgensii Gosink et al. 1998

@ref: 37300

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Polaribacter

species: Polaribacter irgensii

strain designation: 23-P

type strain: yes

Morphology

cell morphology

  • @ref: 37300
  • gram stain: negative
  • cell shape: oval-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
37300MEDIUM 345 - for PolaribacteryesYeast extract (0.400 g);Ammonium chloride (0.200 g);Succinic acid (0.200g);Tryptone (0.500 g);Beef extract (0.400 g);Di Potassium monohydrogenophosphate (0.010g);Solution SL-6 - M00545 (1.000 ml);Vitamins solution - M00646 (Balch,1979) (10.000 ml);Synthet
37300CIP Medium 345yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=345

culture temp

@refgrowthtypetemperaturerange
37300positivegrowth4psychrophilic
37300positivegrowth5psychrophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3730017108D-arabinose-degradation
3730015824D-fructose-degradation
3730017634D-glucose-degradation
3730065327D-xylose-degradation
3730017057cellobiose-degradation
3730017716lactose-degradation
3730017306maltose-degradation
3730017814salicin-degradation
3730017992sucrose-degradation
3730017632nitrate-reduction
3730016301nitrite-reduction
3730017632nitrate-respiration

metabolite production

  • @ref: 37300
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 37300
  • Chebi-ID: 17234
  • metabolite: glucose
  • methylred-test: -

enzymes

@refvalueactivityec
37300oxidase-
37300beta-galactosidase-3.2.1.23
37300alcohol dehydrogenase-1.1.1.1
37300catalase+1.11.1.6
37300gamma-glutamyltransferase+2.3.2.2
37300lysine decarboxylase-4.1.1.18
37300ornithine decarboxylase-4.1.1.17
37300phenylalanine ammonia-lyase-4.3.1.24
37300tryptophan deaminase-
37300urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
37300-+---++---++--------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
37300Antarctic penninsulaAntarcticaATAAntarctica
37300Penola StraitAntarcticaATAAntarcticaEnvironment, Sea water

Safety information

risk assessment

  • @ref: 37300
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 37300

culture collection no.: CIP 106478, ATCC 700398

straininfo link

  • @ref: 94268
  • straininfo: 100868

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny9542092Polaribacter gen. nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov. and P. filamentus sp. nov., gas vacuolate polar marine bacteria of the Cytophaga-Flavobacterium-Bacteroides group and reclassification of 'Flectobacillus glomeratus' as Polaribacter glomeratus comb. nov.Gosink JJ, Woese CR, Staley JTInt J Syst Bacteriol10.1099/00207713-48-1-2231998Antarctic Regions, Arctic Regions, Bacteriological Techniques, Bacteroides/*classification/genetics/ultrastructure, Cytophaga/*classification/genetics/ultrastructure, DNA, Bacterial/analysis, Flavobacterium/*classification/genetics/ultrastructure, Microscopy, Electron, Molecular Sequence Data, Phylogeny, RNA, Bacterial/analysis, RNA, Ribosomal, 16S/analysis, Seawater/*microbiologyGenetics
Phylogeny27498989Polaribacter marinaquae sp. nov., isolated from seawater.Wang Y, Gao L, Ming H, Zhang P, Zhu WInt J Syst Evol Microbiol10.1099/ijsem.0.0013962016Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
37300Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106478Collection of Institut Pasteur (CIP 106478)
68382Automatically annotated from API zym
94268Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID100868.1