Strain identifier

BacDive ID: 137320

Type strain: No

Species: Vibrio halioticoli

Strain Designation: A611

Strain history: CIP <- 1999, T. Sawabe, Fisheries Fac., Hokkaido Univ., Sapporo, Japan: strain A611 <- Y. Oda

NCBI tax ID(s): 71388 (species)

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General

@ref: 37241

BacDive-ID: 137320

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, rod-shaped

description: Vibrio halioticoli A611 is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Vibrionaceae.

NCBI tax id

  • NCBI tax id: 71388
  • Matching level: species

strain history

@refhistory
67770IAM 14597 <-- T. Sawabe A611.
37241CIP <- 1999, T. Sawabe, Fisheries Fac., Hokkaido Univ., Sapporo, Japan: strain A611 <- Y. Oda

doi: 10.13145/bacdive137320.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio halioticoli
  • full scientific name: Vibrio halioticoli Sawabe et al. 1998

@ref: 37241

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio halioticoli

strain designation: A611

type strain: no

Morphology

cell morphology

  • @ref: 37241
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
37241Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
37241CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
37241positivegrowth25mesophilic
67770positivegrowth25mesophilic
37241positivegrowth15-25psychrophilic
37241nogrowth5psychrophilic
37241nogrowth37mesophilic
37241nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 37241
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
37241NaClpositivegrowth2-6 %
37241NaClnogrowth0 %
37241NaClnogrowth8 %
37241NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
37241esculin-hydrolysis4853
37241nitrate+reduction17632
37241nitrite-reduction16301
37241glucose+degradation17234

metabolite production

  • @ref: 37241
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3724115688acetoin-
3724117234glucose+

enzymes

@refvalueactivityec
37241oxidase+
37241beta-galactosidase-3.2.1.23
37241alcohol dehydrogenase-1.1.1.1
37241gelatinase-
37241amylase-
37241caseinase-3.4.21.50
37241catalase+1.11.1.6
37241tween esterase+
37241gamma-glutamyltransferase-2.3.2.2
37241lecithinase-
37241lipase-
37241lysine decarboxylase-4.1.1.18
37241ornithine decarboxylase-4.1.1.17
37241phenylalanine ammonia-lyase-4.3.1.24
37241protease-
37241tryptophan deaminase-
37241urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
37241-+-+-+----+------+--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
37241----+----++++----+---+-+/-+/-+/-+/-+-+/------++-+/--------+--

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
37241HokkaidoJapanJPNAsia
67770Gut of abalones
37241HokkaidoJapanJPNAsiaAnimal, Abalone, gut1993

Safety information

risk assessment

  • @ref: 37241
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Vibrio halioticoli gene for 16S rRNA, partial sequence, strain:IAM14597
  • accession: AB000391
  • length: 1471
  • database: ena
  • NCBI tax ID: 71388

External links

@ref: 37241

culture collection no.: CIP 106284, IAM 14597, JCM 21272, ATCC 700681, LMG 19700

straininfo link

  • @ref: 94250
  • straininfo: 13501

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
37241Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106284Collection of Institut Pasteur (CIP 106284)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
94250Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID13501.1