Strain identifier

BacDive ID: 1373

Type strain: Yes

Species: Oceanobacillus picturae

Strain Designation: mccs2171

Strain history: CIP <- 2004, DSMZ <- LMG <- J. Heyrman, Univ. Ghent, Belgium: strain mccs2171

NCBI tax ID(s): 171693 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 5586

BacDive-ID: 1373

DSM-Number: 14867

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Oceanobacillus picturae mccs2171 is an aerobe, spore-forming, mesophilic bacterium that was isolated from mural painting.

NCBI tax id

  • NCBI tax id: 171693
  • Matching level: species

strain history

@refhistory
5586<- D. Janssens, LMG; mccs2171 <- J. Heyrman, Univ. Ghent, Belgium
67771<- LMG, mccs2171 <- J. Heyrman, Univ. Ghent Belgium
121823CIP <- 2004, DSMZ <- LMG <- J. Heyrman, Univ. Ghent, Belgium: strain mccs2171

doi: 10.13145/bacdive1373.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Oceanobacillus
  • species: Oceanobacillus picturae
  • full scientific name: Oceanobacillus picturae (Heyrman et al. 2003) Lee et al. 2006
  • synonyms

    • @ref: 20215
    • synonym: Virgibacillus picturae

@ref: 5586

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Oceanobacillus

species: Oceanobacillus picturae

full scientific name: Oceanobacillus picturae (Heyrman et al. 2003) Lee et al. 2006

strain designation: mccs2171

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityflagellum arrangement
23030positiverod-shapedyesperitrichous
67771rod-shapedyes
67771positive
121823positiverod-shapedyes

colony morphology

  • @ref: 121823

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5586BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33218Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
121823CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
121823CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
5586positivegrowth28mesophilic
23030positivegrowth5.0-42.0
33218positivegrowth30mesophilic
60324positivegrowth30-37mesophilic
67771positivegrowth28mesophilic
121823positivegrowth22-37
121823nogrowth10psychrophilic
121823nogrowth45thermophilic
121823nogrowth55thermophilic

culture pH

  • @ref: 121823
  • ability: positive
  • type: growth
  • pH: 6

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
60324aerobe
67771aerobe
121823obligate aerobe

spore formation

@refspore descriptiontype of sporespore formation
23030ellipsoidal,subterminal or terminal,in swollen sporangiasporeyes
121823yes

halophily

@refsaltgrowthtested relationconcentration
23030NaClpositivegrowth0.0-22.0 %(w/v)
121823NaClpositivegrowth0-10 %

observation

  • @ref: 67771
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12182316947citrate-carbon source
1218234853esculin-hydrolysis
121823606565hippurate+hydrolysis
12182317632nitrate-reduction
12182316301nitrite-reduction
12182317632nitrate-respiration

metabolite production

  • @ref: 121823
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12182315688acetoin-
12182317234glucose-

enzymes

@refvalueactivityec
23030catalase+1.11.1.6
23030cytochrome oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
121823oxidase-
121823beta-galactosidase+3.2.1.23
121823alcohol dehydrogenase-1.1.1.1
121823gelatinase+/-
121823amylase+
121823DNase-
121823caseinase-3.4.21.50
121823catalase+1.11.1.6
121823tween esterase+
121823gamma-glutamyltransferase+2.3.2.2
121823lysine decarboxylase-4.1.1.18
121823ornithine decarboxylase-4.1.1.17
121823urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121823-++-------++-+------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
5586mural paintingSeville, CarmonaSpainESPEurope
60324Mural paintingSpainESPEurope
67771From mural paintingCarmona, SevilleSpainESPEurope
121823Mural paintingSpainESPEurope

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment
#Engineered#Other#Painting

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
55861Risk group (German classification)
1218231Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Oceanobacillus picturae genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: 637AB367167637ena171693
20218Oceanobacillus picturae genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: 484AB367168484ena171693
20218Virgibacillus picturae 16S rRNA gene, type strain LMG 19492TAJ3150601516ena171693
20218Virgibacillus picturae partial 16S rRNA gene, isolate OS-221.bAM2373971468ena171693

GC content

  • @ref: 67771
  • GC-content: 39.5

External links

@ref: 5586

culture collection no.: DSM 14867, LMG 19492, CCUG 54775, KCTC 3821, CIP 108264

straininfo link

  • @ref: 71024
  • straininfo: 13182

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12710619Virgibacillus carmonensis sp. nov., Virgibacillus necropolis sp. nov. and Virgibacillus picturae sp. nov., three novel species isolated from deteriorated mural paintings, transfer of the species of the genus salibacillus to Virgibacillus, as Virgibacillus marismortui comb. nov. and Virgibacillus salexigens comb. nov., and emended description of the genus Virgibacillus.Heyrman J, Logan NA, Busse HJ, Balcaen A, Lebbe L, Rodriguez-Diaz M, Swings J, De Vos PInt J Syst Evol Microbiol10.1099/ijs.0.02371-02003Bacillus/*classification/genetics/isolation & purification/metabolism, Base Composition, Biodegradation, Environmental, Biofilms, DNA, Bacterial/analysis/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Paintings, Phenotype, Phylogeny, RNA, Ribosomal, 16S/*analysis/genetics, Sequence Analysis, DNAGenetics
Phylogeny19620352Oceanobacillus kapialis sp. nov., from fermented shrimp paste in Thailand.Namwong S, Tanasupawat S, Lee KC, Lee JSInt J Syst Evol Microbiol10.1099/ijs.0.007161-02009Bacillaceae/*classification/genetics/*isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, *Food Microbiology, Hydrogen-Ion Concentration, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Thailand, Vitamin K 2/analysisBiotechnology
Phylogeny23625258Oceanobacillus chungangensis sp. nov., isolated from a sand dune.Lee DC, Kang H, Weerawongwiwat V, Kim B, Choi YW, Kim WInt J Syst Evol Microbiol10.1099/ijs.0.046441-02013Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Silicon Dioxide, Vitamin K 2/analogs & derivatives/analysisGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5586Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14867)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14867
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23030Jung-Sook Lee,Jee-Min Lim,Keun Chul Lee,Jae-Chan Lee,Yong-Ha Park,Chang-Jin Kim10.1099/ijs.0.63734-0Virgibacillus koreensis sp. nov., a novel bacterium from a salt field, and transfer of Virgibacillus picturae to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. with emended descriptionsIJSEM 56: 251-257 200616403894
33218Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5867
60324Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 54775)https://www.ccug.se/strain?id=54775
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68382Automatically annotated from API zym
71024Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13182.1StrainInfo: A central database for resolving microbial strain identifiers
121823Curators of the CIPCollection of Institut Pasteur (CIP 108264)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108264