Strain identifier

BacDive ID: 13726

Type strain: Yes

Species: Paracoccus bengalensis

Strain Designation: JJJ

Strain history: <- P. Roy, Dept. Microbiol., Bose Inst., India; JJJ <- W. Ghosh et al.

NCBI tax ID(s): 34007 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6759

BacDive-ID: 13726

DSM-Number: 17099

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Paracoccus bengalensis JJJ is a mesophilic bacterium that was isolated from soil adjacent to the roots of the plant Clitoria ternatea, a native legume of the lower-Gangetic plains of India .

NCBI tax id

  • NCBI tax id: 34007
  • Matching level: species

strain history: <- P. Roy, Dept. Microbiol., Bose Inst., India; JJJ <- W. Ghosh et al.

doi: 10.13145/bacdive13726.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Rhodobacteraceae
  • genus: Paracoccus
  • species: Paracoccus bengalensis
  • full scientific name: Paracoccus bengalensis Ghosh et al. 2006

@ref: 6759

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Paracoccus

species: Paracoccus bengalensis

full scientific name: Paracoccus bengalensis Ghosh et al. 2006

strain designation: JJJ

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 6759
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 6759
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 6759
  • sample type: soil adjacent to the roots of the plant Clitoria ternatea, a native legume of the lower-Gangetic plains of India (a slender under shrub or herb)
  • host species: Clitoria ternatea
  • geographic location: West Bengal, Dist. Kolkata
  • country: India
  • origin.country: IND
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)

Safety information

risk assessment

  • @ref: 6759
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6759
  • description: Paracoccus bengalensis 16S rRNA gene, type strain JJJT
  • accession: AJ864469
  • length: 1362
  • database: ena
  • NCBI tax ID: 302403

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paracoccus versutus DSM 17099GCA_003386575contigncbi34007
66792Paracoccus bengalensis strain DSM 17099302403.6wgspatric34007
66792Paracoccus bengalensis DSM 170992773857629draftimg302403

GC content

  • @ref: 6759
  • GC-content: 65.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 6759

culture collection no.: DSM 17099, LMG 22700, MTCC 7003

straininfo link

@refpassport
20218http://www.straininfo.net/strains/692174
20218http://www.straininfo.net/strains/379174
20218http://www.straininfo.net/strains/690165

literature

  • topic: Phylogeny
  • Pubmed-ID: 16824961
  • title: Paracoccus bengalensis sp. nov., a novel sulfur-oxidizing chemolithoautotroph from the rhizospheric soil of an Indian tropical leguminous plant.
  • authors: Ghosh W, Mandal S, Roy P
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2005.10.004
  • year: 2005
  • mesh: Fabaceae/microbiology, Fatty Acids/analysis, Paracoccus/*isolation & purification/metabolism, RNA, Ribosomal, 16S/analysis, Rhizome/microbiology, Sequence Homology, Nucleic Acid, Soil Microbiology, Sulfur/metabolism, Tetrathionic Acid/metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6759Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17099)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17099
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)