Strain identifier
BacDive ID: 13721
Type strain: 
Species: Paracoccus bogoriensis
Strain Designation: BOG6
Strain history: <- P. Golyshin, HZI, Braunschweig, Germany; BOG6 <- G. Osanjo, School of Pharmacy, University of Nairobi
NCBI tax ID(s): 242065 (species)
General
@ref: 6512
BacDive-ID: 13721
DSM-Number: 16578
keywords: genome sequence, 16S sequence, mesophilic
description: Paracoccus bogoriensis BOG6 is a mesophilic Proteobacterium that was isolated from hot spring.
NCBI tax id
- NCBI tax id: 242065
- Matching level: species
strain history
- @ref: 6512
- history: <- P. Golyshin, HZI, Braunschweig, Germany; BOG6 <- G. Osanjo, School of Pharmacy, University of Nairobi
doi: 10.13145/bacdive13721.20230509.8.1
Name and taxonomic classification
@ref: 6512
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Paracoccus
species: Paracoccus bogoriensis
full scientific name: Paracoccus bogoriensis Osanjo et. al.
strain designation: BOG6
type strain: yes
Culture and growth conditions
culture medium
- @ref: 6512
- name: PARACOCCUS BOGORIENSIS MEDIUM (DSMZ Medium 1325)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1325
- composition: Name: PARACOCCUS BOGORIENSIS MEDIUM (DSMZ Medium 1325) Composition: Agar 15.0 g/l Yeast extract 5.0 g/l Peptone 5.0 g/l Na2CO3 3.0 g/l Glucose 2.0 g/l KH2PO4 1.0 g/l MgSO4 x 7 H2O 0.2 g/l FeCl2 x 4 H2O 0.00149254 g/l MnCl2 x 4 H2O 0.000199005 g/l CoCl2 x 6 H2O 0.000189055 g/l ZnCl2 6.96517e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l H3BO3 5.97015e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l HCl Distilled water
culture temp
- @ref: 6512
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 6512
- sample type: hot spring
- geographic location: Lake Bogoria (0° 22'S and 36° 05'E)
- country: Kenya
- origin.country: KEN
- continent: Africa
- latitude: -0.3667
- longitude: 36.0833
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
Sequence information
16S sequences
- @ref: 6512
- description: Paracoccus sp. BOG6 partial 16S rRNA gene, isolate BOG6
- accession: AJ580352
- length: 1385
- database: ena
- NCBI tax ID: 242065
Genome sequences
- @ref: 66792
- description: Paracoccus bogoriensis strain BOG6
- accession: 242065.3
- assembly level: wgs
- database: patric
- NCBI tax ID: 242065
GC content
- @ref: 6512
- GC-content: 66.7
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 71.056 | no |
| gram-positive | no | 97.717 | no |
| anaerobic | no | 96.532 | no |
| aerobic | yes | 82.33 | no |
| halophile | yes | 57.424 | no |
| spore-forming | no | 95.373 | no |
| glucose-util | yes | 85.168 | no |
| flagellated | no | 90.045 | no |
| thermophile | no | 78.585 | yes |
| glucose-ferment | no | 87.625 | no |
External links
@ref: 6512
culture collection no.: DSM 16578, LMG 22798
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 6512 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16578) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16578 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |