Strain identifier
BacDive ID: 137208
Type strain: 
Species: Acinetobacter baumannii
Strain history: CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 527 <- L. Dijkshoorn, Rotterdam Univ., Rotterdam, The Netherlands: strain RUH 875
NCBI tax ID(s): 1217635 (strain), 470 (species)
version 9.3 (current version)
General
@ref: 37087
BacDive-ID: 137208
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Acinetobacter baumannii CIP 110435 is a mesophilic, Gram-negative bacterium of the family Moraxellaceae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1217635 | strain |
| 470 | species |
strain history
- @ref: 37087
- history: CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 527 <- L. Dijkshoorn, Rotterdam Univ., Rotterdam, The Netherlands: strain RUH 875
doi: 10.13145/bacdive137208.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter baumannii
- full scientific name: Acinetobacter baumannii Bouvet and Grimont 1986
@ref: 37087
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter baumannii
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | cell shape | motility |
|---|---|---|---|---|
| 125438 | negative | 98.5 | ||
| 37087 | negative | rod-shaped | no |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 37087 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
| 37087 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
- @ref: 37087
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: aerobe
- confidence: 93.1
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 94.665 |
| 125439 | no | 93.7 |
Isolation, sampling and environmental information
isolation
| @ref | geographic location | country | origin.country | continent | sample type | isolation date |
|---|---|---|---|---|---|---|
| 37087 | Dordrecht | Netherlands | NLD | Europe | ||
| 37087 | Dordrecht | Netherlands | NLD | Europe | Human, Urine | 1984 |
Safety information
risk assessment
- @ref: 37087
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acinetobacter baumannii NIPH 527 | GCA_000369185 | scaffold | ncbi | 1217635 |
| 66792 | Acinetobacter baumannii NIPH 527 | 1217635.3 | wgs | patric | 1217635 |
| 66792 | Acinetobacter baumannii NIPH 527 | 2529293007 | draft | img | 1217635 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 93.1 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 82.9 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 60.1 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 93.7 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.5 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 98.324 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 89.75 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 94.665 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 99.975 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 75.679 | no |
External links
@ref: 37087
culture collection no.: CIP 110435, NIPH 527, CCM 7289, LMG 10543, RUH 875
straininfo link
- @ref: 94157
- straininfo: 13531
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Enzymology | 21722261 | Epidemiological characterization and distribution of carbapenem-resistant Acinetobacter baumannii clinical isolates in Italy. | Mezzatesta ML, D'Andrea MM, Migliavacca R, Giani T, Gona F, Nucleo E, Fugazza G, Pagani L, Rossolini GM, Stefani S | Clin Microbiol Infect | 10.1111/j.1469-0691.2011.03527.x | 2011 | Acinetobacter Infections/*epidemiology/*microbiology, Acinetobacter baumannii/*classification/drug effects/*genetics/isolation & purification, Adolescent, Adult, Aged, Aged, 80 and over, Anti-Bacterial Agents/*pharmacology, Carbapenems/*pharmacology, Child, Child, Preschool, Cluster Analysis, DNA Fingerprinting, DNA, Bacterial/genetics, Electrophoresis, Gel, Pulsed-Field, Female, Genotype, Humans, Infant, Italy/epidemiology, Male, Middle Aged, Molecular Epidemiology, Multilocus Sequence Typing, Young Adult, *beta-Lactam Resistance, beta-Lactamases/genetics | Pathogenicity |
| Pathogenicity | 22347396 | Differences in Acinetobacter baumannii strains and host innate immune response determine morbidity and mortality in experimental pneumonia. | de Breij A, Eveillard M, Dijkshoorn L, van den Broek PJ, Nibbering PH, Joly-Guillou ML | PLoS One | 10.1371/journal.pone.0030673 | 2012 | Acinetobacter Infections/immunology/mortality, Acinetobacter baumannii/*immunology/pathogenicity, Animals, Cytokines/analysis/blood, *Immunity, Innate, Inflammation, Lung/immunology, Mice, Morbidity, Mortality, Pneumonia/immunology/*microbiology/mortality | |
| Genetics | 27601280 | A large conjugative Acinetobacter baumannii plasmid carrying the sul2 sulphonamide and strAB streptomycin resistance genes. | Hamidian M, Ambrose SJ, Hall RM | Plasmid | 10.1016/j.plasmid.2016.09.001 | 2016 | Acinetobacter baumannii/*drug effects/*genetics, Anti-Bacterial Agents/*pharmacology, Bacterial Proteins/*genetics, Carrier Proteins/*genetics, *Conjugation, Genetic, DNA Transposable Elements, *Drug Resistance, Bacterial, Gene Order, *Genes, Bacterial, Genome, Bacterial, Operon, Plasmids/*genetics, Streptomycin/pharmacology, Sulfonamides/pharmacology | Pathogenicity |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 37087 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110435 | Collection of Institut Pasteur (CIP 110435) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 94157 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID13531.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |