Strain identifier

BacDive ID: 137166

Type strain: No

Species: Brevibacillus agri

Strain history: CIP <- 1993, H. Takagi, Res. Lab. Higeta Shoyu Co, Japan: strain NRRL: NRS-616 <- N.R. Smith, Bacillus brevis <- J.R. Porter <- G. Bredmann

NCBI tax ID(s): 51101 (species)

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General

@ref: 37033

BacDive-ID: 137166

keywords: 16S sequence, Bacteria, obligate aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Brevibacillus agri CIP 103839 is an obligate aerobe, spore-forming, mesophilic bacterium of the family Paenibacillaceae.

NCBI tax id

  • NCBI tax id: 51101
  • Matching level: species

strain history

@refhistory
67770O. Shida <-- NRRL NRS-616 <-- J. R. Porter <-- G. Bredemann.
37033CIP <- 1993, H. Takagi, Res. Lab. Higeta Shoyu Co, Japan: strain NRRL: NRS-616 <- N.R. Smith, Bacillus brevis <- J.R. Porter <- G. Bredmann

doi: 10.13145/bacdive137166.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Brevibacillus
  • species: Brevibacillus agri
  • full scientific name: Brevibacillus agri (Nakamura 1993 ex Laubach and Rice 1916) Shida et al. 1996

  • synonyms

    @refsynonym
    20215Bacillus galactophilus
    20215Bacillus agri

@ref: 37033

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Paenibacillaceae

genus: Brevibacillus

species: Brevibacillus agri

type strain: no

Morphology

cell morphology

  • @ref: 37033
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
37033MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
37033CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
37033positivegrowth30mesophilic
67770positivegrowth30mesophilic
37033positivegrowth37-45
37033nogrowth10psychrophilic

culture pH

  • @ref: 37033
  • ability: positive
  • type: growth
  • pH: 6

Physiology and metabolism

oxygen tolerance

  • @ref: 37033
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 37033
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
37033NaClpositivegrowth0-2 %
37033NaClnogrowth4 %
37033NaClnogrowth6 %
37033NaClnogrowth8 %
37033NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
37033citrate-carbon source16947
37033nitrate+reduction17632
37033nitrite-reduction16301
37033nitrate-respiration17632

antibiotic resistance

  • @ref: 37033
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 37033
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
37033oxidase+
37033alcohol dehydrogenase-1.1.1.1
37033gelatinase+
37033amylase+
37033caseinase-3.4.21.50
37033catalase+1.11.1.6
37033lecithinase+
37033lysine decarboxylase-4.1.1.18
37033ornithine decarboxylase-4.1.1.17
37033urease-3.5.1.5

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
37033-------------------------------------------------

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_346.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_95;96_241;97_263;98_292;99_346&stattab=map
  • Last taxonomy: Brevibacillus
  • 16S sequence: LC379070
  • Sequence Identity:
  • Total samples: 7747
  • soil counts: 3695
  • aquatic counts: 1150
  • animal counts: 2257
  • plant counts: 645

Safety information

risk assessment

  • @ref: 37033
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Brevibacillus agri gene for 16S rRNA, partial sequence, strain: JCM 8507
  • accession: LC379070
  • length: 1459
  • database: ena
  • NCBI tax ID: 51101

GC content

  • @ref: 67770
  • GC-content: 52.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 37033

culture collection no.: CIP 103839, ATCC 51360, JCM 8507, DSM 8372, IFO 15519, LMG 16099, NBRC 15519, NCIMB 13347, NRRL NRS-616, NRRL: NRS-616

straininfo link

  • @ref: 94122
  • straininfo: 10042

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
37033Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103839Collection of Institut Pasteur (CIP 103839)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
94122Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID10042.1