Strain identifier

BacDive ID: 137157

Type strain: No

Species: Arcanobacterium haemolyticum

Strain Designation: 53/W/1

Strain history: CIP <- 1981, NCTC <- C.S. Cummins <- M.L. Baksdale <- A.A. Liebow: strain 53/W/1

NCBI tax ID(s): 28264 (species)

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General

@ref: 37021

BacDive-ID: 137157

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Arcanobacterium haemolyticum 53/W/1 is a microaerophile, mesophilic bacterium that was isolated from Probably human.

NCBI tax id

  • NCBI tax id: 28264
  • Matching level: species

strain history

  • @ref: 37021
  • history: CIP <- 1981, NCTC <- C.S. Cummins <- M.L. Baksdale <- A.A. Liebow: strain 53/W/1

doi: 10.13145/bacdive137157.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Actinomycetales
  • family: Actinomycetaceae
  • genus: Arcanobacterium
  • species: Arcanobacterium haemolyticum
  • full scientific name: Arcanobacterium haemolyticum (ex MacLean et al. 1946) Collins et al. 1983

@ref: 37021

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Arcanobacterium

species: Arcanobacterium haemolyticum

strain designation: 53/W/1

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
125438no93.5
12543996.3positive
125439no98.7

colony morphology

  • @ref: 46565
  • incubation period: 1 day

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
37021MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
37021CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperature
37021positivegrowth30
46565positivegrowth37

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
46565microaerophile
125439microaerophile99

spore formation

  • @ref: 125438
  • spore formation: no
  • confidence: 90.766

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838116199urea-hydrolysis
6838116443D-tagatose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838128053melibiose-builds acid from
6838117306maltose-builds acid from
6838127941pullulan-builds acid from
6838128087glycogen-builds acid from
68381606565hippurate-hydrolysis
6838140585alpha-cyclodextrin-builds acid from
6838118333D-arabitol-builds acid from
6838117992sucrose-builds acid from
6838127082trehalose-builds acid from
6838116634raffinose-builds acid from
6838117716lactose+builds acid from
6838130911sorbitol-builds acid from
6838116899D-mannitol-builds acid from
6838116988D-ribose-builds acid from
6838129016arginine-hydrolysis
6838029985L-glutamate-degradation
6838016024D-mannose+fermentation
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6837917716lactose+fermentation
6837917306maltose+fermentation
6837916899D-mannitol-fermentation
6837965327D-xylose-fermentation
683795291gelatin-hydrolysis
6837916199urea-hydrolysis
683794853esculin-hydrolysis
6837917632nitrate-reduction
6838130849L-arabinose-builds acid from
6838027897tryptophan-energy source
6838017632nitrate-reduction
6838016634raffinose-fermentation
6837928087glycogen-fermentation

metabolite production

@refChebi-IDmetaboliteproduction
6838115688acetoinno
6838035581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6838115688acetoin-
6838035581indole-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase-3.1.3.1
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381arginine dihydrolase-3.5.3.6
68381beta-glucosidase-3.2.1.21
68380serine arylamidase+
68380glutamyl-glutamate arylamidase+
68380glycin arylamidase+
68380tyrosine arylamidase+
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380beta-glucosidase-3.2.1.21
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68379urease-3.5.1.5
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68381glycyl tryptophan arylamidase-
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381beta-glucuronidase-3.2.1.31
68380histidine arylamidase+
68380alanine arylamidase+3.4.11.2
68380pyrrolidonyl arylamidase+3.4.19.3
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380alpha-glucosidase+3.2.1.20
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68379catalase-1.11.1.6
68379gelatinase-
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase+3.5.1.B15

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    46565C10:06.310
    46565C16:022.116
    46565C18:011.318
    46565C18:1 ω9c20.517.769
    46565C18:2 ω6,9c/C18:0 ANTE39.817.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlRIBXYLMANMALLACSACGLYGCAT
46565-+++-+++----+--+++--
46565-+++-+++-------++--

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
46565-----+--+-+------+--

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
46565---+-+---++------++++++++++++

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
46565--+------+-------+--------------

Isolation, sampling and environmental information

isolation

  • @ref: 46565
  • sample type: Probably human

isolation source categories

  • Cat1: #Host
  • Cat2: #Human

Safety information

risk assessment

  • @ref: 37021
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 124043
  • description: A.haemolyticum gene for 16S rRNA
  • accession: X73952
  • length: 1489
  • database: nuccore
  • NCBI tax ID: 28264

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Arcanobacterium haemolyticum NCTC9697GCA_900445275contigncbi28264
66792Arcanobacterium haemolyticum strain NCTC969728264.11wgspatric28264
66792Arcanobacterium haemolyticum NCTC 96972808606756draftimg28264

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes89.174no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no79.732yes
125438spore-formingspore-formingAbility to form endo- or exosporesno90.766no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno94.5no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no84.171no
125438motile2+flagellatedAbility to perform flagellated movementno93.5no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno81.3
125439BacteriaNetmotilityAbility to perform movementno98.7
125439BacteriaNetgram_stainReaction to gram-stainingpositive96.3
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthmicroaerophile99

External links

@ref: 37021

culture collection no.: CIP 81.16, NCTC 9697, CCUG 17214

straininfo link

  • @ref: 94117
  • straininfo: 51678

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
37021Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2081.16Collection of Institut Pasteur (CIP 81.16)
46565Curators of the CCUGhttps://www.ccug.se/strain?id=17214Culture Collection University of Gothenburg (CCUG) (CCUG 17214)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68379Automatically annotated from API Coryne
68380Automatically annotated from API rID32A
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
94117Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID51678.1
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG