Strain identifier

BacDive ID: 137047

Type strain: Yes

Species: Legionella quateirensis

Strain Designation: 1335

Strain history: CIP <- 1997, CDC <- W.L. Thacker: strain 1335 <- P.J. Dennis

NCBI tax ID(s): 45072 (species)

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General

@ref: 36888

BacDive-ID: 137047

keywords: genome sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Legionella quateirensis 1335 is a microaerophile, mesophilic, Gram-negative bacterium of the family Legionellaceae.

NCBI tax id

  • NCBI tax id: 45072
  • Matching level: species

strain history

  • @ref: 36888
  • history: CIP <- 1997, CDC <- W.L. Thacker: strain 1335 <- P.J. Dennis

doi: 10.13145/bacdive137047.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Legionellales
  • family: Legionellaceae
  • genus: Legionella
  • species: Legionella quateirensis
  • full scientific name: Legionella quateirensis Dennis et al. 1993

@ref: 36888

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Legionellales

family: Legionellaceae

genus: Legionella

species: Legionella quateirensis

strain designation: 1335

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.996
36888negativerod-shapedno

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36888MEDIUM 23 - for Afipia and LegionellayesDistilled water make up to (1000.000 ml);Legionella agar (37.000 g);Legionella - enrichment mixture (10.000 ml)
36888CIP Medium 23yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=23

culture temp

@refgrowthtypetemperaturerange
36888positivegrowth37mesophilic
56536positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 56536
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.992

enzymes

@refvalueactivityec
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • @reffatty acidpercentageECL
    56536C15:0215
    56536C16:06.616
    56536C17:01.617
    56536C18:04.818
    56536C19:01.419
    56536C20:01.420
    56536C14:0 ISO3.713.618
    56536C15:0 ANTEISO6.914.711
    56536C15:0 ISO 3OH2.816.135
    56536C15:1 ω6c514.856
    56536C16:0 iso17.115.626
    56536C16:1 ω7c41.715.819
    56536C17:0 anteiso3.616.722
    56536Unidentified1.315.927
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG
  • @reffatty acidpercentageECL
    56536C14:00.814
    56536C15:01.815
    56536C16:07.416
    56536C17:01.217
    56536C18:03.918
    56536C19:0119
    56536C20:01.220
    56536C14:0 ISO5.513.618
    56536C14:0 ISO 3OH0.415.117
    56536C14:1 ω5c0.613.899
    56536C15:0 ANTEISO1014.711
    56536C15:0 ISO0.414.621
    56536C15:1 ω6c5.514.856
    56536C16:0 iso17.815.626
    56536C16:1 ω7c38.515.819
    56536C17:0 anteiso3.216.722
    56536C18:0 ISO0.217.632
    56536C20:0 ISO0.319.635
    56536Unidentified0.315.933
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
36888-+-+-+++--++--------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
36888QuarteiraPortugalPRTEurope
56536QuarteiraPortugalPRTEuropeShower in hotel bathroom
36888QuarteiraPortugalPRTEuropeShower in hotel bathroom

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#Indoor
#Engineered#Built environment#Water reservoir (Aquarium/pool)

Safety information

risk assessment

  • @ref: 36888
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Legionella quateirensis ATCC 49507GCA_001467955scaffoldncbi45072
66792Legionella quateirensis strain ATCC 4950745072.5wgspatric45072
66792Legionella quateirensis ATCC 495072667527804draftimg45072

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno77.849no
gram-positiveno98.148no
anaerobicno97.996no
halophileno88.284no
spore-formingno94.837no
glucose-utilyes67.591no
motileyes76.732no
aerobicno92.379yes
thermophileno98.854no
glucose-fermentno87.346no

External links

@ref: 36888

culture collection no.: CIP 105271, ATCC 49507, CCUG 44899

straininfo link

  • @ref: 94026
  • straininfo: 42523

literature

  • topic: Phylogeny
  • Pubmed-ID: 36173731
  • title: Legionella bononiensis sp. nov., isolated from a hotel water distribution system in northern Italy.
  • authors: Girolamini L, Pascale MR, Salaris S, Mazzotta M, Orsini M, Grottola A, Zini N, Cristino S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.005512
  • year: 2022
  • mesh: Agar, Bacterial Typing Techniques, Base Composition, Catalase/genetics, Charcoal, Ciprofloxacin, Cycloheximide, Cysteine/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gelatinases/genetics, Glycine/genetics, Hippurates, *Legionella, Nucleotides, Phylogeny, Polymyxin B/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Vancomycin, Water
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36888Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105271Collection of Institut Pasteur (CIP 105271)
56536Curators of the CCUGhttps://www.ccug.se/strain?id=44899Culture Collection University of Gothenburg (CCUG) (CCUG 44899)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
94026Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID42523.1