Strain identifier
BacDive ID: 137038
Type strain:
Species: Helicobacter mustelae
Strain Designation: R85-136P
Strain history: CIP <- 1996, ATCC <- 1989, NCTC <- ATCC <- J.G. Fox, Cambridge, MA, USA: strain R85-136P
NCBI tax ID(s): 217 (species)
General
@ref: 36872
BacDive-ID: 137038
keywords: genome sequence, Bacteria, microaerophile, mesophilic, Gram-negative
description: Helicobacter mustelae R85-136P is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from Ferret gastric mucosa.
NCBI tax id
- NCBI tax id: 217
- Matching level: species
strain history
- @ref: 36872
- history: CIP <- 1996, ATCC <- 1989, NCTC <- ATCC <- J.G. Fox, Cambridge, MA, USA: strain R85-136P
doi: 10.13145/bacdive137038.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Helicobacteraceae
- genus: Helicobacter
- species: Helicobacter mustelae
- full scientific name: Helicobacter mustelae (Fox et al. 1988) Goodwin et al. 1989
synonyms
@ref synonym 20215 Campylobacter mustelae 20215 Campylobacter pylori subsp. mustelae
@ref: 36872
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Helicobacteraceae
genus: Helicobacter
species: Helicobacter mustelae
strain designation: R85-136P
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | negative | 99.998 | ||
36872 | negative | rod-shaped | yes |
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
36872 | MEDIUM 45 - for Columbia agar with sheep blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml) | |
36872 | CIP Medium 45 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
36872 | positive | growth | 37 | mesophilic |
48251 | positive | growth | 42 | thermophilic |
36872 | positive | growth | 41 | thermophilic |
36872 | no | growth | 25 | mesophilic |
36872 | no | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 48251
- oxygen tolerance: microaerophile
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.996 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
36872 | 606565 | hippurate | - | hydrolysis |
36872 | 17632 | nitrate | + | reduction |
36872 | 16301 | nitrite | - | reduction |
metabolite production
- @ref: 36872
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
36872 | oxidase | + | |
36872 | catalase | + | 1.11.1.6 |
36872 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
36872 | - | + | + | + | - | + | - | - | - | - | + | + | - | - | - | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
48251 | Ferret gastric mucosa |
36872 | Animal, Ferret, gastric mucosa |
isolation source categories
- Cat1: #Host Body-Site
- Cat2: #Gastrointestinal tract
- Cat3: #Stomach
Safety information
risk assessment
- @ref: 36872
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Helicobacter mustelae NCTC12198 | GCA_900476215 | complete | ncbi | 217 |
66792 | Helicobacter mustelae strain NCTC12198 | 217.6 | complete | patric | 217 |
66792 | Helicobacter mustelae ATCC 43772 | 646564537 | complete | img | 679897 |
66792 | Helicobacter mustelae NCTC 12198 | 2808606644 | complete | img | 217 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | yes | 59.279 | no |
gram-positive | no | 98.953 | no |
anaerobic | no | 90.172 | no |
aerobic | no | 96.24 | no |
halophile | no | 81.419 | no |
spore-forming | no | 97.267 | no |
thermophile | no | 63.216 | no |
glucose-util | no | 78.773 | no |
motile | yes | 89.22 | no |
glucose-ferment | no | 85.105 | no |
External links
@ref: 36872
culture collection no.: CIP 103759, ATCC 43772, CCUG 25715, NCTC 12198
straininfo link
- @ref: 94020
- straininfo: 7400
literature
Pubmed-ID | title | authors | journal | DOI | year | mesh | topic |
---|---|---|---|---|---|---|---|
9125590 | Infection of the ferret stomach by isogenic flagellar mutant strains of Helicobacter mustelae. | Andrutis KA, Fox JG, Schauer DB, Marini RP, Li X, Yan L, Josenhans C, Suerbaum S | Infect Immun | 10.1128/iai.65.5.1962-1966.1997 | 1997 | Animals, Antibodies, Bacterial/analysis, Biopsy, Colony Count, Microbial, Female, Ferrets, Flagellin/*genetics, Gastric Mucosa/microbiology, Helicobacter/*genetics/growth & development/immunology, Helicobacter Infections/*genetics/immunology/*microbiology, Male, Specific Pathogen-Free Organisms, Stomach/*microbiology/pathology | |
9297827 | The lipopolysaccharide of Helicobacter mustelae type strain ATCC 43772 expresses the monofucosyl A type 1 histo-blood group epitope. | Monteiro MA, Zheng PY, Appelmelk BJ, Perry MB | FEMS Microbiol Lett | 10.1111/j.1574-6968.1997.tb12630.x | 1997 | Animals, Bacterial Outer Membrane Proteins/chemistry/immunology, Carbohydrate Sequence, Epitopes/*analysis, Ferrets, Fucose, Gastric Mucosa/microbiology, Gastritis/microbiology, Helicobacter/*chemistry/immunology, Lipopolysaccharides/*chemistry/immunology, Magnetic Resonance Spectroscopy, Molecular Sequence Data | Genetics |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
36872 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103759 | Collection of Institut Pasteur (CIP 103759) | |
48251 | Curators of the CCUG | https://www.ccug.se/strain?id=25715 | Culture Collection University of Gothenburg (CCUG) (CCUG 25715) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68382 | Automatically annotated from API zym | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
94020 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID7400.1 |