Strain identifier

BacDive ID: 137035

Type strain: No

Species: Aeribacillus pallidus

Strain Designation: TD1

Strain history: CIP <- 2009, DSMZ <- M. Yasawong, Thailand: strain TD1

NCBI tax ID(s): 33936 (species)

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General

@ref: 36867

BacDive-ID: 137035

DSM-Number: 22570

keywords: genome sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Aeribacillus pallidus TD1 is an obligate aerobe, mesophilic, Gram-positive bacterium of the family Bacillaceae.

NCBI tax id

  • NCBI tax id: 33936
  • Matching level: species

strain history

@refhistory
68743<- M. Yasawong, HZI, Braunschweig, Germany; TD1
36867CIP <- 2009, DSMZ <- M. Yasawong, Thailand: strain TD1

doi: 10.13145/bacdive137035.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Aeribacillus
  • species: Aeribacillus pallidus
  • full scientific name: Aeribacillus pallidus (Scholz et al. 1988) Miñana-Galbis et al. 2010

  • synonyms

    @refsynonym
    20215Geobacillus pallidus
    20215Bacillus pallidus

@ref: 36867

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Geobacillus

species: Geobacillus pallidus

full scientific name: Geobacillus sp.

strain designation: TD1

type strain: no

Morphology

cell morphology

  • @ref: 36867
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
68743CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium220.pdf
36867MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
36867CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
36867positivegrowth37mesophilic
68743positivegrowth55thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 36867
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3686717632nitrate-reduction
3686716301nitrite-reduction

metabolite production

  • @ref: 36867
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
36867oxidase+
36867catalase+1.11.1.6
36867urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
36867--++-----+-+--++----

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
36867Tao DomThailandTHAAsia
36867Tao DomThailandTHAAsiaEnvironment, Soil sample, hot spring2009

Safety information

risk assessment

  • @ref: 36867
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeribacillus pallidus strain TD133936.20wgspatric33936
66792Aeribacillus pallidus TD1GCA_004210355contigncbi33936

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveyes85.387no
anaerobicno96.793no
halophileno69.091no
spore-formingyes96.18no
glucose-utilyes87.61no
motileyes86.344no
flagellatedyes89.976no
thermophileyes93.99no
aerobicyes87.507no
glucose-fermentno93.689no

External links

@ref: 36867

culture collection no.: CIP 110046, DSM 22570

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36867Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110046Collection of Institut Pasteur (CIP 110046)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
68743Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-22570Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22570)