Strain identifier

BacDive ID: 136930

Type strain: No

Species: Serratia bockelmannii

Strain Designation: Db10

Strain history: CIP <- 2003, J. Ewbank, Marseille, France: strain Db10 <- H. Boman, Stockholm

NCBI tax ID(s): 615 (species)

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General

@ref: 36686

BacDive-ID: 136930

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Serratia bockelmannii Db10 is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Yersiniaceae.

NCBI tax id

  • NCBI tax id: 615
  • Matching level: species

strain history

  • @ref: 36686
  • history: CIP <- 2003, J. Ewbank, Marseille, France: strain Db10 <- H. Boman, Stockholm

doi: 10.13145/bacdive136930.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Yersiniaceae
  • genus: Serratia
  • species: Serratia bockelmannii
  • full scientific name: Serratia bockelmannii Cho et al. 2020

@ref: 36686

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Yersiniaceae

genus: Serratia

species: Serratia bockelmannii

strain designation: Db10

type strain: no

Morphology

cell morphology

  • @ref: 36686
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36686MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
36686CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
36686positivegrowth30mesophilic
36686positivegrowth5-37
36686nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 36686
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3668629864mannitol+fermentation
3668616947citrate+carbon source
3668617234glucose+fermentation
3668617716lactose+fermentation
3668617632nitrate+reduction
3668616301nitrite+reduction
3668615792malonate-assimilation
36686132112sodium thiosulfate-builds gas from

antibiotic resistance

  • @ref: 36686
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 36686
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3668615688acetoin+
3668617234glucose-

enzymes

@refvalueactivityec
36686oxidase-
36686beta-galactosidase+3.2.1.23
36686alcohol dehydrogenase-1.1.1.1
36686gelatinase+
36686catalase+1.11.1.6
36686lysine decarboxylase+4.1.1.18
36686ornithine decarboxylase+4.1.1.17
36686phenylalanine ammonia-lyase-4.3.1.24
36686tryptophan deaminase-
36686urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
36686-++++++-+-++-+-+++--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
36686+++++--+-++------+++----+--++--+++--++-++------+++++-+++++++++---++-----++-++++++-+-----+++++++--++

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typeisolation date
36686SwedenSWEEurope
36686SwedenSWEEuropeAnimal, Drosophila melanogaster1980

Safety information

risk assessment

  • @ref: 36686
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 36686

culture collection no.: CIP 108086

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36686Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108086Collection of Institut Pasteur (CIP 108086)
68382Automatically annotated from API zym