Strain identifier

BacDive ID: 136911

Type strain: Yes

Species: Alkalihalobacillus algicola

Strain Designation: F12

Strain history: CIP <- 2003, E. Ivanova, Swinburne Inst., Victoria, Australia: strain F12

NCBI tax ID(s): 225844 (species)

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General

@ref: 36656

BacDive-ID: 136911

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, filament-shaped

description: Alkalihalobacillus algicola F12 is an aerobe, spore-forming, mesophilic bacterium of the family Bacillaceae.

NCBI tax id

  • NCBI tax id: 225844
  • Matching level: species

strain history

@refhistory
366562003, E. Ivanova, Swinburne Inst., Victoria, Australia: strain F12
67771<- CIP <- 2003, E. Ivanova, Swinburne Inst., Victoria, Australia: strain F12
36656CIP <- 2003, E. Ivanova, Swinburne Inst., Victoria, Australia: strain F12

doi: 10.13145/bacdive136911.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Alkalihalobacillus
  • species: Alkalihalobacillus algicola
  • full scientific name: Alkalihalobacillus algicola (Ivanova et al. 2004) Patel and Gupta 2020

  • synonyms

    @refsynonym
    20215Pseudalkalibacillus algicola
    20215Bacillus algicola

@ref: 36656

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Bacillus

species: Bacillus algicola

strain designation: F12

type strain: yes

Morphology

cell morphology

@refcell shapegram stainmotility
67771filament-shaped
67771positive
36656rod-shapedpositiveyes

colony morphology

  • @ref: 36656

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36656Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
36656CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
36656positivegrowth30mesophilic
67771positivegrowth28-30mesophilic
36656positivegrowth22-37
36656nogrowth10psychrophilic
36656nogrowth45thermophilic
36656nogrowth55thermophilic

culture pH

  • @ref: 36656
  • ability: no
  • type: growth
  • pH: 6

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
67771aerobe
36656obligate aerobe

spore formation

  • @ref: 67771
  • type of spore: spore
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
36656NaClnogrowth0 %
36656NaClnogrowth2 %
36656NaClnogrowth4 %
36656NaClnogrowth6 %
36656NaClnogrowth8 %
36656NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose+builds acid from62318
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371raffinose-builds acid from16634
68371melezitose+builds acid from6731
68371inulin+builds acid from15443
68371trehalose+builds acid from27082
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371D-mannose+builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
36656citrate-carbon source16947
36656esculin+hydrolysis4853
36656hippurate+hydrolysis606565
36656nitrate-reduction17632
36656nitrite-reduction16301
36656nitrate-respiration17632

metabolite production

  • @ref: 36656
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3665615688acetoin+
3665617234glucose-

enzymes

@refvalueactivityec
36656oxidase-
36656beta-galactosidase+3.2.1.23
36656alcohol dehydrogenase-1.1.1.1
36656catalase+1.11.1.6
36656gamma-glutamyltransferase-2.3.2.2
36656urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
36656-++-------++---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
36656------------++/-+/----------+/-+/-+/---+/-+/-+++-+/----+/-+-------+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
36656-+-++--+-+-----+--++--+----------+-+-----------------------++-------------------------+---+--+-----

Isolation, sampling and environmental information

isolation

@refgeographic locationsample typecountryorigin.countrycontinentisolation date
36656Pacific Ocean, Kuril Islands
67771Kuril Islands, Pacific oceanFrom degraded thallus of Brown alga, `Fucus evanescens`Pacific Ocean
36656Kuril IslandsBrown alga Fucus evanescensRussian FederationRUSEurope1999

taxonmaps

  • @ref: 69479
  • File name: preview.99_142254.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_3264;97_4003;98_5107;99_142254&stattab=map
  • Last taxonomy: Alkalihalobacillus algicola
  • 16S sequence: AY228462
  • Sequence Identity:
  • Total samples: 26
  • soil counts: 2
  • aquatic counts: 18
  • animal counts: 5
  • plant counts: 1

Safety information

risk assessment

  • @ref: 36656
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67771
  • description: Bacillus sp. KMM 3737 16S ribosomal RNA gene, partial sequence
  • accession: AY228462
  • length: 1545
  • database: ena
  • NCBI tax ID: 225844

GC content

  • @ref: 67771
  • GC-content: 37.4

External links

@ref: 36656

culture collection no.: CIP 107850, KMM 3737, KCTC 13005

straininfo link

  • @ref: 93929
  • straininfo: 99587

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36656Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107850Collection of Institut Pasteur (CIP 107850)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
93929Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID99587.1