Strain identifier

BacDive ID: 136889

Type strain: Yes

Species: Taylorella asinigenitalis

Strain Designation: UCD-1

Strain history: CIP <- 2002, ATCC <- D. Hirsh <- S.S. Jang: strain UCD-1

NCBI tax ID(s): 1408475 (strain), 84590 (species)

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General

@ref: 36622

BacDive-ID: 136889

keywords: genome sequence, Bacteria, microaerophile, mesophilic

description: Taylorella asinigenitalis UCD-1 is a microaerophile, mesophilic bacterium of the family Alcaligenaceae.

NCBI tax id

NCBI tax idMatching level
84590species
1408475strain

strain history

  • @ref: 36622
  • history: CIP <- 2002, ATCC <- D. Hirsh <- S.S. Jang: strain UCD-1

doi: 10.13145/bacdive136889.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Taylorella
  • species: Taylorella asinigenitalis
  • full scientific name: Taylorella asinigenitalis Jang et al. 2001

@ref: 36622

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Taylorella

species: Taylorella asinigenitalis

strain designation: UCD-1

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no93.224
6948099.986negative
36622nonegativerod-shaped

colony morphology

  • @ref: 36622

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36622MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and NeisseriayesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml)
36622CIP Medium 10yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=10

culture temp

@refgrowthtypetemperaturerange
36622positivegrowth37mesophilic
36622positivegrowth30-41
36622nogrowth15psychrophilic
36622nogrowth25mesophilic
36622nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 36622
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no91
69480no99.999

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
366224853esculin-hydrolysis
36622606565hippurate+hydrolysis
3662217632nitrate+reduction
3662216301nitrite-reduction

antibiotic resistance

  • @ref: 36622
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 36622
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
36622oxidase+
36622beta-galactosidase-3.2.1.23
36622alcohol dehydrogenase-1.1.1.1
36622catalase+1.11.1.6
36622gamma-glutamyltransferase+2.3.2.2
36622lysine decarboxylase-4.1.1.18
36622ornithine decarboxylase-4.1.1.17
36622urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
36622CaliforniaUSAUSANorth America
36622CaliforniaUnited States of AmericaUSANorth AmericaUrethral fossa of a jack donkey, Equus asinus1997

Safety information

risk assessment

  • @ref: 36622
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Taylorella asinigenitalis ATCC 700933GCA_000687755contigncbi1408475
66792Taylorella asinigenitalis ATCC 7009331408475.3wgspatric1408475
66792Taylorella asinigenitalis ATCC 7009332556921627draftimg1408475

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno91no
motileno85.29no
gram-positiveno98.753no
anaerobicno94.103no
halophileno76.554no
spore-formingno97.532no
glucose-utilno79.42no
thermophileno97.439yes
aerobicno82.911no
flagellatedno96.888no
glucose-fermentno88.508no

External links

@ref: 36622

culture collection no.: CIP 107673, ATCC 700933, LMG 19572

straininfo link

  • @ref: 93910
  • straininfo: 100992

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11411723Taylorella asinigenitalis sp. nov., a bacterium isolated from the genital tract of male donkeys (Equus asinus).Jang SS, Donahue JM, Arata AB, Goris J, Hansen LM, Earley DL, Vandamme PA, Timoney PJ, Hirsh DCInt J Syst Evol Microbiol10.1099/00207713-51-3-9712001Animals, Antibodies, Bacterial/blood, California, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Electrophoresis, Gel, Pulsed-Field, Enzymes/analysis, Equidae/*microbiology, Female, Kentucky, Male, Molecular Sequence Data, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Taylorella equigenitalis/*classification/genetics/isolation & purification, Urethra/*microbiologyEnzymology
Phylogeny16793226Isolation and identification of Taylorella asinigenitalis from the genital tract of a stallion, first case of a natural infection.Baverud V, Nystrom C, Johansson KEVet Microbiol10.1016/j.vetmic.2006.04.0272006Animals, Anti-Bacterial Agents/pharmacology/therapeutic use, Base Sequence, DNA, Ribosomal/chemistry, Diagnosis, Differential, Gram-Negative Bacterial Infections/diagnosis/drug therapy/microbiology/*veterinary, Horse Diseases/diagnosis/drug therapy/*microbiology, Horses, Male, Microbial Sensitivity Tests/veterinary, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity, Taylorella/classification/drug effects/genetics/*isolation & purification, Taylorella equigenitalis/classification/drug effects/isolation & purificationGenetics
Phylogeny18523489Structure of the O-polysaccharide of the lipopolysaccharide produced by Taylorella asinigenitalis type strain (ATCC 700933).Vinogradov E, MacLean LL, Brooks BW, Lutze-Wallace C, Perry MBBiochem Cell Biol10.1139/o08-0362008Nuclear Magnetic Resonance, Biomolecular, O Antigens/biosynthesis/*chemistry, Spectrometry, Mass, Electrospray Ionization, Taylorella/classification/*metabolismMetabolism
Phylogeny24436068Description of Pelistega indica sp. nov., isolated from human gut.Prakash O, Munot H, Nimonkar Y, Sharma M, Kumbhare S, Shouche YSInt J Syst Evol Microbiol10.1099/ijs.0.059782-02014Alcaligenaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Gastrointestinal Tract/microbiology, Humans, India, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAPathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36622Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107673Collection of Institut Pasteur (CIP 107673)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
93910Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID100992.1