Strain identifier

BacDive ID: 136841

Type strain: Yes

Species: Flavobacterium piscis

Strain Designation: 412-R09

Strain history: CIP <- 2014, CCUG <- 2010 A.I. Vela, UCM, Madrid, Spain: strain 412-R09

NCBI tax ID(s): 1114874 (species)

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General

@ref: 36521

BacDive-ID: 136841

keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Flavobacterium piscis 412-R09 is an aerobe, mesophilic, Gram-negative bacterium of the family Flavobacteriaceae.

NCBI tax id

  • NCBI tax id: 1114874
  • Matching level: species

strain history

  • @ref: 36521
  • history: CIP <- 2014, CCUG <- 2010 A.I. Vela, UCM, Madrid, Spain: strain 412-R09

doi: 10.13145/bacdive136841.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium piscis
  • full scientific name: Flavobacterium piscis Zamora et al. 2014

@ref: 36521

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium piscis

strain designation: 412-R09

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.985
36521negativerod-shapedno

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36521MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromatiyesDistilled water make up to (1000.000 ml);R2A agar (18.200 g)
36521CIP Medium 566yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566

culture temp

@refgrowthtypetemperaturerange
36521positivegrowth30mesophilic
62198positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62198
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.989

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typesampling dateisolation date
36521MadridSpainESPEurope
62198MadridSpainESPEuropeTrout kidney2009-09-04
36521MadridSpainESPEuropeTrout, kidney2009-09-04

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Urogenital tract#Kidney
#Host#Fishes#Salmonidae

Safety information

risk assessment

  • @ref: 36521
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Flavobacterium piscis CCUG 60099GCA_001686925contigncbi1114874
66792Flavobacterium piscis CCUG 60099GCA_002222045scaffoldncbi1114874
66792Flavobacterium piscis strain CCUG 600991114874.7wgspatric1114874
66792Flavobacterium piscis strain CCUG 600991114874.4wgspatric1114874
66792Flavobacterium piscis CCUG 600992751185903draftimg1114874

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno93.345no
gram-positiveno98.115no
anaerobicno99.594no
aerobicyes89.776yes
halophileno94.424no
spore-formingno93.804no
thermophileno99.804yes
glucose-utilyes86.603no
motileno84.266no
glucose-fermentno88.448no

External links

@ref: 36521

culture collection no.: CIP 110846, CCUG 60099, CECT 7911

straininfo link

  • @ref: 93880
  • straininfo: 392248

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24065772Flavobacterium tructae sp. nov. and Flavobacterium piscis sp. nov., isolated from farmed rainbow trout (Oncorhynchus mykiss).Zamora L, Vela AI, Sanchez-Porro C, Palacios MA, Moore ERB, Dominguez L, Ventosa A, Fernandez-Garayzabal JFInt J Syst Evol Microbiol10.1099/ijs.0.056341-02013Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Oncorhynchus mykiss/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny27902216Flavobacterium gilvum sp. nov., isolated from stream water.Shin SK, Ha Y, Cho YJ, Kwon S, Yong D, Yi HInt J Syst Evol Microbiol10.1099/ijsem.0.0015942017

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36521Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110846Collection of Institut Pasteur (CIP 110846)
62198Curators of the CCUGhttps://www.ccug.se/strain?id=60099Culture Collection University of Gothenburg (CCUG) (CCUG 60099)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
93880Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID392248.1