Strain identifier
BacDive ID: 136829
Type strain:
Species: Achromobacter mucicolens
Strain history: CIP <- 1960, R. Hugh: strain 228-3, Achromobacter xylosoxidans denitrificans
NCBI tax ID(s): 217203 (species)
General
@ref: 36500
BacDive-ID: 136829
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Achromobacter mucicolens CIP 60.81 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from Buccal carvity of patient with laryngeal cancer.
NCBI tax id
- NCBI tax id: 217203
- Matching level: species
strain history
@ref | history |
---|---|
67770 | IAM 12594 <-- CIP 60.81 <-- P. Thibault <-- R. Hugh 1323 (628-3). |
67770 | R. Hugh 1323. |
36500 | CIP <- 1960, R. Hugh: strain 228-3, Achromobacter xylosoxidans denitrificans |
doi: 10.13145/bacdive136829.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Achromobacter
- species: Achromobacter mucicolens
- full scientific name: Achromobacter mucicolens Vandamme et al. 2013
@ref: 36500
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Achromobacter
species: Achromobacter mucicolens
type strain: no
Morphology
cell morphology
- @ref: 36500
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
colony morphology
- @ref: 36500
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
36500 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
36500 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
36500 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
36500 | positive | growth | 15-41 | |
36500 | no | growth | 5 | psychrophilic |
36500 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 36500
- oxygen tolerance: obligate aerobe
spore formation
- @ref: 36500
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
36500 | NaCl | positive | growth | 0-8 % |
36500 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
36500 | 16947 | citrate | + | carbon source |
36500 | 4853 | esculin | - | hydrolysis |
36500 | 606565 | hippurate | - | hydrolysis |
36500 | 17632 | nitrate | + | builds gas from |
36500 | 17632 | nitrate | + | reduction |
36500 | 16301 | nitrite | + | builds gas from |
36500 | 16301 | nitrite | + | reduction |
36500 | 15792 | malonate | - | assimilation |
36500 | 17632 | nitrate | + | respiration |
antibiotic resistance
- @ref: 36500
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 36500
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
36500 | 15688 | acetoin | - | |
36500 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
36500 | oxidase | + | |
36500 | beta-galactosidase | - | 3.2.1.23 |
36500 | alcohol dehydrogenase | - | 1.1.1.1 |
36500 | gelatinase | - | |
36500 | amylase | - | |
36500 | DNase | - | |
36500 | caseinase | - | 3.4.21.50 |
36500 | catalase | + | 1.11.1.6 |
36500 | tween esterase | - | |
36500 | gamma-glutamyltransferase | - | 2.3.2.2 |
36500 | lecithinase | - | |
36500 | lipase | - | |
36500 | lysine decarboxylase | - | 4.1.1.18 |
36500 | ornithine decarboxylase | - | 4.1.1.17 |
36500 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
36500 | protease | - | |
36500 | tryptophan deaminase | - | |
36500 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
36500 | - | + | + | + | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
36500 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | + | - | - | - | - | + | + | + | - | + | + | - | - | - | - | + | - | + | + | - | - | - | + | - | - | - | - | - | - | - | + | - | + | - | - | + | + | + | - | + | - | - | - | - | - | + | + | + | + | - | - | - | - | + | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | isolation date |
---|---|---|
67770 | Buccal carvity of patient with laryngeal cancer | |
36500 | Human, Buccal cavity with laryngeal cancer | 1957 |
taxonmaps
- @ref: 69479
- File name: preview.99_710.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_9;97_9;98_570;99_710&stattab=map
- Last taxonomy: Achromobacter
- 16S sequence: LC506136
- Sequence Identity:
- Total samples: 1520
- soil counts: 273
- aquatic counts: 362
- animal counts: 742
- plant counts: 143
Safety information
risk assessment
- @ref: 36500
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 67770
- description: Achromobacter denitrificans JCM 9658 gene for 16S ribosomal RNA, partial sequence
- accession: LC506136
- length: 1453
- database: ena
- NCBI tax ID: 32002
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Achromobacter mucicolens LMG 3415 | GCA_902859995 | contig | ncbi | 1389922 |
66792 | Achromobacter mucicolens strain LMG 3415 | 1389922.7 | wgs | patric | 1389922 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 87.097 | no |
gram-positive | no | 98.528 | no |
anaerobic | no | 98.478 | no |
halophile | no | 87.904 | no |
spore-forming | no | 95.804 | no |
glucose-util | no | 70.352 | no |
thermophile | no | 99.488 | yes |
aerobic | yes | 90.237 | no |
flagellated | no | 65.894 | no |
glucose-ferment | no | 90.086 | no |
External links
@ref: 36500
culture collection no.: CIP 60.81, ATCC 13138, JCM 20671, IAM 12594, LMG 3415, JCM 9658
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
36500 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2060.81 | Collection of Institut Pasteur (CIP 60.81) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |