Strain identifier
BacDive ID: 136828
Type strain: 
Species: Acinetobacter baumannii
Strain history: CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 1734
NCBI tax ID(s): 1217644 (strain), 470 (species)
version 9.3 (current version)
General
@ref: 36497
BacDive-ID: 136828
keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Acinetobacter baumannii CIP 110466 is an aerobe, mesophilic, Gram-negative bacterium of the family Moraxellaceae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1217644 | strain |
| 470 | species |
strain history
| @ref | history |
|---|---|
| 36497 | 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 1734 |
| 36497 | CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 1734 |
doi: 10.13145/bacdive136828.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter baumannii
- full scientific name: Acinetobacter baumannii Bouvet and Grimont 1986
@ref: 36497
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter baumannii
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | cell shape | motility |
|---|---|---|---|---|
| 125438 | negative | 97.5 | ||
| 125439 | negative | 91.6 | ||
| 36497 | negative | oval-shaped | no |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 36497 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
| 36497 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
- @ref: 36497
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 125438 | aerobe | 90.886 |
| 125439 | aerobe | 93.6 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 93.598 |
| 125439 | no | 98.9 |
Isolation, sampling and environmental information
isolation
| @ref | country | origin.country | continent | sample type | isolation date |
|---|---|---|---|---|---|
| 36497 | Czech Republic | CZE | Europe | ||
| 36497 | Czech Republic | CZE | Europe | Human, Sputum | 2001 |
Safety information
risk assessment
- @ref: 36497
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acinetobacter baumannii NIPH 1734 | GCA_000368245 | scaffold | ncbi | 1217644 |
| 66792 | Acinetobacter baumannii NIPH 1734 | 1217644.3 | wgs | patric | 1217644 |
| 66792 | Acinetobacter baumannii NIPH 1734 | 2534681911 | draft | img | 1217644 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 93.6 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 91.6 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 58.6 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 98.9 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.5 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 98.333 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 90.886 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 93.598 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 100 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 74.322 | no |
External links
@ref: 36497
culture collection no.: CIP 110466, NIPH 1734
straininfo link
- @ref: 93874
- straininfo: 412806
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 36497 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110466 | Collection of Institut Pasteur (CIP 110466) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 93874 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID412806.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |