Strain identifier

BacDive ID: 136825

Type strain: No

Species: Achromobacter xylosoxidans

Strain history: CIP <- 1971, E. Yabuuchi, Osaka, Japon: strain 563, Achromobacter xylosoxidans

NCBI tax ID(s): 85698 (species)

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General

@ref: 36490

BacDive-ID: 136825

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Achromobacter xylosoxidans CIP 71.33 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Ear discharge.

NCBI tax id

  • NCBI tax id: 85698
  • Matching level: species

strain history

@refhistory
364901971, E. Yabuuchi, Osaka, Japon: strain 563, Achromobacter xylosoxidans
67770R. Hugh 2860.
36490CIP <- 1971, E. Yabuuchi, Osaka, Japon: strain 563, Achromobacter xylosoxidans

doi: 10.13145/bacdive136825.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Achromobacter
  • species: Achromobacter xylosoxidans
  • full scientific name: Achromobacter xylosoxidans (ex Yabuuchi and Ohyama 1971) Yabuuchi and Yano 1981

  • synonyms

    @refsynonym
    20215Alcaligenes xylosoxydans
    20215Alcaligenes xylosoxidans
    20215Alcaligenes denitrificans subsp. xylosoxydans
    20215Achromobacter xylosoxidans

@ref: 36490

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter xylosoxidans

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
125439negative92.6
125438negative97.328
36490negativeoval-shapedyes

colony morphology

  • @ref: 36490
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36490MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
36490CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperature
36490positivegrowth37
67770positivegrowth30
36490positivegrowth15-41
36490nogrowth5
36490nogrowth45

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
36490obligate aerobe
125438aerobe90.563
125439obligate aerobe94.6

spore formation

  • @ref: 125439
  • spore formation: no
  • confidence: 92.7

halophily

@refsaltgrowthtested relationconcentration
36490NaClpositivegrowth0-6 %
36490NaClnogrowth8 %
36490NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3649016947citrate+carbon source
364904853esculin-hydrolysis
36490606565hippurate-hydrolysis
3649017632nitrate+builds gas from
3649017632nitrate+reduction
3649016301nitrite+builds gas from
3649016301nitrite+reduction
3649015792malonate-assimilation
3649017632nitrate+respiration

antibiotic resistance

  • @ref: 36490
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 36490
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3649015688acetoin-
3649017234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
36490oxidase+
36490beta-galactosidase-3.2.1.23
36490alcohol dehydrogenase-1.1.1.1
36490gelatinase-
36490amylase-
36490DNase-
36490caseinase-3.4.21.50
36490catalase+1.11.1.6
36490tween esterase-
36490gamma-glutamyltransferase-2.3.2.2
36490lecithinase-
36490lipase-
36490lysine decarboxylase-4.1.1.18
36490ornithine decarboxylase-4.1.1.17
36490phenylalanine ammonia-lyase-4.3.1.24
36490protease-
36490tryptophan deaminase-
36490urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
36490--+--+----++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
36490+---+--------------------------------------++-++++++-+----+-++---+-------+-++-++++------+++++++-+++

Isolation, sampling and environmental information

isolation

@refsample type
67770Ear discharge
36490Human, Ear

taxonmaps

  • @ref: 69479
  • File name: preview.99_710.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_9;97_9;98_570;99_710&stattab=map
  • Last taxonomy: Achromobacter
  • 16S sequence: LC506137
  • Sequence Identity:
  • Total samples: 1520
  • soil counts: 273
  • aquatic counts: 362
  • animal counts: 742
  • plant counts: 143

Safety information

risk assessment

  • @ref: 36490
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Achromobacter xylosoxidans JCM 9660 gene for 16S ribosomal RNA, partial sequence
  • accession: LC506137
  • length: 1453
  • database: nuccore
  • NCBI tax ID: 85698

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Achromobacter xylosoxidans NCTC10808GCA_900475575completencbi85698
66792Achromobacter xylosoxidans strain NCTC1080885698.131completepatric85698
66792Achromobacter xylosoxidans NCTC 108082841492466completeimg85698

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno97.328no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.905no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes90.563yes
125438spore-formingspore-formingAbility to form endo- or exosporesno88.127no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno99yes
125438motile2+flagellatedAbility to perform flagellated movementyes84.35no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno92.7
125439BacteriaNetmotilityAbility to perform movementyes81.8
125439BacteriaNetgram_stainReaction to gram-stainingnegative92.6
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe94.6

External links

@ref: 36490

culture collection no.: CIP 71.33, JCM 9660, ATCC 27062, IAM 12685, LMG 3429, NCTC 10808

straininfo link

  • @ref: 93873
  • straininfo: 842

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36490Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2071.33Collection of Institut Pasteur (CIP 71.33)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
93873Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID842.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG