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Strain identifier

BacDive ID: 136795

Type strain: Yes

Species: Shewanella oneidensis

Strain history: LMG 19005 <-- ATCC 700550 <-- K. H. Nealson, MR-1.

NCBI tax ID(s): 211586 (strain), 70863 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 36439

BacDive-ID: 136795

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Shewanella oneidensis CIP 106686 is a mesophilic bacterium that was isolated from Sediment from Oneida Lake.

NCBI tax id

NCBI tax idMatching level
70863species
211586strain

strain history: LMG 19005 <-- ATCC 700550 <-- K. H. Nealson, MR-1.

doi: 10.13145/bacdive136795.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Shewanellaceae
  • genus: Shewanella
  • species: Shewanella oneidensis
  • full scientific name: Shewanella oneidensis Venkateswaran et al. 1999

@ref: 36439

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Shewanellaceae

genus: Shewanella

species: Shewanella oneidensis

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 36439
  • name: MEDIUM 72- for trypto casein soja agar
  • growth: yes
  • composition: Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
36439positivegrowth30mesophilic
67770positivegrowth28mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Sediment from Oneida Lake
  • geographic location: NY
  • country: USA
  • origin.country: USA
  • continent: North America

taxonmaps

  • @ref: 69479
  • File name: preview.99_2138.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_126;97_134;98_363;99_2138&stattab=map
  • Last taxonomy: Shewanella oneidensis
  • 16S sequence: AF005251
  • Sequence Identity:
  • Total samples: 217
  • soil counts: 2
  • aquatic counts: 93
  • animal counts: 118
  • plant counts: 4

Sequence information

16S sequences

  • @ref: 67770
  • description: Shewanella oneidensis MR-1 16S ribosomal RNA gene, partial sequence
  • accession: AF005251
  • length: 1389
  • database: ena
  • NCBI tax ID: 211586

Genome sequences

  • @ref: 67770
  • description: Shewanella oneidensis MR-1, complete genome
  • accession: AE014299
  • database: ena
  • NCBI tax ID: 211586

External links

@ref: 36439

culture collection no.: CIP 106686, ATCC 700550, VKPM B-9861, JCM 31522, BCRC 17276, LMG 19005, NCIMB 14063

straininfo link

@refpassport
20218http://www.straininfo.net/strains/121994
20218http://www.straininfo.net/strains/48767
20218http://www.straininfo.net/strains/841056

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
36439Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18843 Collection of Institut Pasteur (CIP 106686)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/