Archive BacDiveID:10.13145/bacdive136795.20221219.7.1

Strain identifier

BacDive ID: 136795

Type strain:

Species: Shewanella oneidensis

Strain history: LMG 19005 <-- ATCC 700550 <-- K. H. Nealson, MR-1.

NCBI tax ID(s): 211586 (strain), 70863 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 36439

BacDive-ID: 136795

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Shewanella oneidensis CIP 106686 is a mesophilic bacterium that was isolated from Sediment from Oneida Lake.

NCBI tax id

NCBI tax id	Matching level
70863	species
211586	strain

strain history: LMG 19005 <-- ATCC 700550 <-- K. H. Nealson, MR-1.

doi: 10.13145/bacdive136795.20221219.7.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella oneidensis
full scientific name: Shewanella oneidensis Venkateswaran et al. 1999

@ref: 36439

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Shewanellaceae

genus: Shewanella

species: Shewanella oneidensis

type strain: yes

Culture and growth conditions

culture medium

@ref: 36439
name: MEDIUM 72- for trypto casein soja agar
growth: yes
composition: Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@ref	growth	type	temperature	range
36439	positive	growth	30	mesophilic
67770	positive	growth	28	mesophilic

Isolation, sampling and environmental information

isolation

@ref: 67770
sample type: Sediment from Oneida Lake
geographic location: NY
country: USA
origin.country: USA
continent: North America

taxonmaps

@ref: 69479
File name: preview.99_2138.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_126;97_134;98_363;99_2138&stattab=map
Last taxonomy: Shewanella oneidensis
16S sequence: AF005251
Sequence Identity:
Total samples: 217
soil counts: 2
aquatic counts: 93
animal counts: 118
plant counts: 4

Sequence information

16S sequences

@ref: 67770
description: Shewanella oneidensis MR-1 16S ribosomal RNA gene, partial sequence
accession: AF005251
length: 1389
database: ena
NCBI tax ID: 211586

Genome sequences

@ref: 67770
description: Shewanella oneidensis MR-1, complete genome
accession: AE014299
database: ena
NCBI tax ID: 211586

External links

@ref: 36439

culture collection no.: CIP 106686, ATCC 700550, VKPM B-9861, JCM 31522, BCRC 17276, LMG 19005, NCIMB 14063

straininfo link

@ref	passport
20218	http://www.straininfo.net/strains/121994
20218	http://www.straininfo.net/strains/48767
20218	http://www.straininfo.net/strains/841056

Reference

@id	authors	title	doi/url	journal	pubmed	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.	StrainInfo introduces electronic passports for microorganisms.	10.1016/j.syapm.2013.11.002	Syst Appl Microbiol. 37: 42-50 2014	24321274
36439	Curators of the CIP		https://brclims.pasteur.fr/brcWeb/souche/detail/1/18843			Collection of Institut Pasteur (CIP 106686)
66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg	BRENDA, the ELIXIR core data resource in 2021: new developments and updates	10.1093/nar/gkaa1025	Nucleic Acids Res. 49: D498-D508 2020	33211880
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/