Strain identifier

BacDive ID: 136795

Type strain: Yes

Species: Shewanella oneidensis

Strain Designation: MR-1

Strain history: CIP <- 2000, ATCC <- K. Venkateswaran, Univ. Wisconsin-Milwaukee, USA: strain MR-1

NCBI tax ID(s): 211586 (strain), 70863 (species)

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General

@ref: 36439

BacDive-ID: 136795

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Shewanella oneidensis MR-1 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from Sediment from Oneida Lake.

NCBI tax id

NCBI tax idMatching level
70863species
211586strain

strain history

@refhistory
67770LMG 19005 <-- ATCC 700550 <-- K. H. Nealson, MR-1.
36439CIP <- 2000, ATCC <- K. Venkateswaran, Univ. Wisconsin-Milwaukee, USA: strain MR-1

doi: 10.13145/bacdive136795.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Shewanellaceae
  • genus: Shewanella
  • species: Shewanella oneidensis
  • full scientific name: Shewanella oneidensis Venkateswaran et al. 1999

@ref: 36439

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Shewanellaceae

genus: Shewanella

species: Shewanella oneidensis

strain designation: MR-1

type strain: yes

Morphology

cell morphology

  • @ref: 36439
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36439MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
36439CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
36439positivegrowth30mesophilic
67770positivegrowth28mesophilic
36439positivegrowth5-30
36439nogrowth37mesophilic
36439nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 36439
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 36439
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
36439NaClpositivegrowth0-2 %
36439NaClnogrowth4 %
36439NaClnogrowth6 %
36439NaClnogrowth8 %
36439NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3643916947citrate-carbon source
364394853esculin+hydrolysis
3643917632nitrate+reduction
3643916301nitrite+reduction
3643917632nitrate+respiration

antibiotic resistance

  • @ref: 36439
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 36439
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
36439oxidase+
36439beta-galactosidase-3.2.1.23
36439alcohol dehydrogenase-1.1.1.1
36439gelatinase+
36439amylase-
36439DNase+
36439caseinase+3.4.21.50
36439catalase+1.11.1.6
36439tween esterase+
36439lecithinase+
36439lipase+
36439lysine decarboxylase-4.1.1.18
36439ornithine decarboxylase+4.1.1.17
36439protease+
36439tryptophan deaminase-
36439urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
36439-+++-+++++++-----+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
36439+--------++--------------------------------------+---------+---------------+---++-+---+---+--++-+--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
67770Sediment from Oneida LakeNYUSAUSANorth America
36439Environment, SedimentsOneida Lake, NYUnited States of AmericaUSANorth America1987

taxonmaps

  • @ref: 69479
  • File name: preview.99_2138.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_126;97_134;98_363;99_2138&stattab=map
  • Last taxonomy: Shewanella oneidensis
  • 16S sequence: AF005251
  • Sequence Identity:
  • Total samples: 217
  • soil counts: 2
  • aquatic counts: 93
  • animal counts: 118
  • plant counts: 4

Safety information

risk assessment

  • @ref: 36439
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Shewanella oneidensis MR-1 16S ribosomal RNA gene, partial sequence
  • accession: AF005251
  • length: 1389
  • database: ena
  • NCBI tax ID: 211586

Genome sequences

  • @ref: 67770
  • description: Shewanella oneidensis MR-1
  • accession: GCA_000146165
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 211586

External links

@ref: 36439

culture collection no.: CIP 106686, ATCC 700550, VKPM B-9861, JCM 31522, BCRC 17276, LMG 19005, NCIMB 14063

straininfo link

  • @ref: 93855
  • straininfo: 12964

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36439Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106686Collection of Institut Pasteur (CIP 106686)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
93855Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID12964.1