Strain identifier

BacDive ID: 13679

Type strain: Yes

Species: Marinovum algicola

Strain Designation: FF3

Strain history: CIP <- 1994, M. Gauthier, INSERM, Nice, France <- ATCC <- C. Rausch de Traubenberg, IFREMER, Brest, France <- IFREMER, Nantes, France: strain FF3

NCBI tax ID(s): 42444 (species)

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General

@ref: 3871

BacDive-ID: 13679

DSM-Number: 10251

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Marinovum algicola FF3 is a mesophilic, Gram-negative, motile bacterium that was isolated from surface of marine dinoflagellate .

NCBI tax id

  • NCBI tax id: 42444
  • Matching level: species

strain history

@refhistory
3871<- ATCC <- M. J. Gauthier, FF3 <- C. Rausch de Traubenberg
67770IAM 14591 <-- ATCC 51440 <-- M. J. Gauthier FF3 <-- C. Rausch de Traubenberg.
116226CIP <- 1994, M. Gauthier, INSERM, Nice, France <- ATCC <- C. Rausch de Traubenberg, IFREMER, Brest, France <- IFREMER, Nantes, France: strain FF3

doi: 10.13145/bacdive13679.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Marinovum
  • species: Marinovum algicola
  • full scientific name: Marinovum algicola (Lafay et al. 1995) Martens et al. 2006
  • synonyms

    @refsynonym
    20215Roseobacter algicola
    20215Ruegeria algicola

@ref: 3871

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Marinovum

species: Marinovum algicola

full scientific name: Marinovum algicola (Lafay et al. 1995) Martens et al. 2006

strain designation: FF3

type strain: yes

Morphology

cell morphology

  • @ref: 116226
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3871BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
35644Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
116226CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
3871positivegrowth28mesophilic
35644positivegrowth22psychrophilic
67770positivegrowth25mesophilic
116226positivegrowth10-37

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11622617632nitrate+reduction
11622616301nitrite-reduction

metabolite production

  • @ref: 116226
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
116226oxidase+
116226beta-galactosidase+3.2.1.23
116226alcohol dehydrogenase-1.1.1.1
116226catalase+1.11.1.6
116226lysine decarboxylase-4.1.1.18
116226ornithine decarboxylase-4.1.1.17
116226urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116226--------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116226---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinentgeographic location
3871surface of marine dinoflagellate (Prorocentrum lima)Prorocentrum limaSpainESPEurope
67770Stationary culture of the toxin-producing marine dinoflagellate Prorocentrum lima PL2VProrocentrum limaSpainESPEuropeInstituto Espanol de Oceanographia, Vigo
116226Laboratory culture of Prorocentrum limaFranceFRAEuropeNantes

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Host#Protozoa#Dinoflagellate

taxonmaps

  • @ref: 69479
  • File name: preview.99_5000.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_2447;97_2982;98_3737;99_5000&stattab=map
  • Last taxonomy: Marinovum algicola
  • 16S sequence: X78315
  • Sequence Identity:
  • Total samples: 927
  • soil counts: 24
  • aquatic counts: 785
  • animal counts: 114
  • plant counts: 4

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
38711Risk group (German classification)
1162261Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Proteobacterium CFW-7 16S ribosomal RNA, partial sequenceAF123059135ena93654
20218Proteobacterium CFS-7 16S ribosomal RNA, partial sequenceAF123062135ena93657
20218R.algocolus (ATCC 51440 T-FF3) gene for 16S ribosomal RNAX783151348ena42444
20218Roseobacter algicola 16S rRNA gene, 23S rRNA gene and internal transcribed spacer (ITS), strain DSM 10251AJ0127051158ena42444
20218Marinovum algicola gene for 16S ribosomal RNA, partial sequenceAB2895921389ena42444
20218Marinovum algicola strain NBRC16653 16S ribosomal RNA gene, partial sequenceDQ9156121307ena42444

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Marinovum algicola strain CECT 539642444.5wgspatric42444
66792Marinovum algicola strain FF342444.9wgspatric42444
66792Marinovum algicola CECT 53962833233958draftimg42444
66792Marinovum algicola DSM 102512615840718draftimg42444
67770Marinovum algicola CECT 5396GCA_900172245contigncbi42444

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno98.661no
anaerobicno96.968no
halophileyes64.796no
spore-formingno95.852no
glucose-utilyes88.361no
aerobicyes88.854no
flagellatedno85.955no
motileno55.273no
thermophileno96.637yes
glucose-fermentno91.085no

External links

@ref: 3871

culture collection no.: DSM 10251, ATCC 51440, JCM 21266, CECT 5396, CIP 104267, IAM 14591, IFO 16653, NBRC 16653

straininfo link

  • @ref: 82862
  • straininfo: 14988

literature

  • topic: Phylogeny
  • Pubmed-ID: 19625441
  • title: Seohaeicola saemankumensis gen. nov., sp. nov., isolated from a tidal flat.
  • authors: Yoon JH, Kang SJ, Lee SY, Oh KH, Oh TK
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.011312-0
  • year: 2009
  • mesh: DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/classification/genetics/*isolation & purification/metabolism, Seawater/*microbiology
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3871Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10251)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10251
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35644Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16157
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
82862Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14988.1StrainInfo: A central database for resolving microbial strain identifiers
116226Curators of the CIPCollection of Institut Pasteur (CIP 104267)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104267