Strain identifier
BacDive ID: 13679
Type strain:
Species: Marinovum algicola
Strain Designation: FF3
Strain history: CIP <- 1994, M. Gauthier, INSERM, Nice, France <- ATCC <- C. Rausch de Traubenberg, IFREMER, Brest, France <- IFREMER, Nantes, France: strain FF3
NCBI tax ID(s): 42444 (species)
General
@ref: 3871
BacDive-ID: 13679
DSM-Number: 10251
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped
description: Marinovum algicola FF3 is a mesophilic, Gram-negative, motile bacterium that was isolated from surface of marine dinoflagellate .
NCBI tax id
- NCBI tax id: 42444
- Matching level: species
strain history
@ref | history |
---|---|
3871 | <- ATCC <- M. J. Gauthier, FF3 <- C. Rausch de Traubenberg |
67770 | IAM 14591 <-- ATCC 51440 <-- M. J. Gauthier FF3 <-- C. Rausch de Traubenberg. |
116226 | CIP <- 1994, M. Gauthier, INSERM, Nice, France <- ATCC <- C. Rausch de Traubenberg, IFREMER, Brest, France <- IFREMER, Nantes, France: strain FF3 |
doi: 10.13145/bacdive13679.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Marinovum
- species: Marinovum algicola
- full scientific name: Marinovum algicola (Lafay et al. 1995) Martens et al. 2006
synonyms
@ref synonym 20215 Roseobacter algicola 20215 Ruegeria algicola
@ref: 3871
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Marinovum
species: Marinovum algicola
full scientific name: Marinovum algicola (Lafay et al. 1995) Martens et al. 2006
strain designation: FF3
type strain: yes
Morphology
cell morphology
- @ref: 116226
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
3871 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
35644 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
116226 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
3871 | positive | growth | 28 | mesophilic |
35644 | positive | growth | 22 | psychrophilic |
67770 | positive | growth | 25 | mesophilic |
116226 | positive | growth | 10-37 |
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
116226 | 17632 | nitrate | + | reduction |
116226 | 16301 | nitrite | - | reduction |
metabolite production
- @ref: 116226
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
116226 | oxidase | + | |
116226 | beta-galactosidase | + | 3.2.1.23 |
116226 | alcohol dehydrogenase | - | 1.1.1.1 |
116226 | catalase | + | 1.11.1.6 |
116226 | lysine decarboxylase | - | 4.1.1.18 |
116226 | ornithine decarboxylase | - | 4.1.1.17 |
116226 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116226 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116226 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | country | origin.country | continent | geographic location |
---|---|---|---|---|---|---|
3871 | surface of marine dinoflagellate (Prorocentrum lima) | Prorocentrum lima | Spain | ESP | Europe | |
67770 | Stationary culture of the toxin-producing marine dinoflagellate Prorocentrum lima PL2V | Prorocentrum lima | Spain | ESP | Europe | Instituto Espanol de Oceanographia, Vigo |
116226 | Laboratory culture of Prorocentrum lima | France | FRA | Europe | Nantes |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Host | #Protozoa | #Dinoflagellate |
taxonmaps
- @ref: 69479
- File name: preview.99_5000.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_2447;97_2982;98_3737;99_5000&stattab=map
- Last taxonomy: Marinovum algicola
- 16S sequence: X78315
- Sequence Identity:
- Total samples: 927
- soil counts: 24
- aquatic counts: 785
- animal counts: 114
- plant counts: 4
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
3871 | 1 | Risk group (German classification) |
116226 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Proteobacterium CFW-7 16S ribosomal RNA, partial sequence | AF123059 | 135 | ena | 93654 |
20218 | Proteobacterium CFS-7 16S ribosomal RNA, partial sequence | AF123062 | 135 | ena | 93657 |
20218 | R.algocolus (ATCC 51440 T-FF3) gene for 16S ribosomal RNA | X78315 | 1348 | ena | 42444 |
20218 | Roseobacter algicola 16S rRNA gene, 23S rRNA gene and internal transcribed spacer (ITS), strain DSM 10251 | AJ012705 | 1158 | ena | 42444 |
20218 | Marinovum algicola gene for 16S ribosomal RNA, partial sequence | AB289592 | 1389 | ena | 42444 |
20218 | Marinovum algicola strain NBRC16653 16S ribosomal RNA gene, partial sequence | DQ915612 | 1307 | ena | 42444 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Marinovum algicola strain CECT 5396 | 42444.5 | wgs | patric | 42444 |
66792 | Marinovum algicola strain FF3 | 42444.9 | wgs | patric | 42444 |
66792 | Marinovum algicola CECT 5396 | 2833233958 | draft | img | 42444 |
66792 | Marinovum algicola DSM 10251 | 2615840718 | draft | img | 42444 |
67770 | Marinovum algicola CECT 5396 | GCA_900172245 | contig | ncbi | 42444 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
gram-positive | no | 98.661 | no |
anaerobic | no | 96.968 | no |
halophile | yes | 64.796 | no |
spore-forming | no | 95.852 | no |
glucose-util | yes | 88.361 | no |
aerobic | yes | 88.854 | no |
flagellated | no | 85.955 | no |
motile | no | 55.273 | no |
thermophile | no | 96.637 | yes |
glucose-ferment | no | 91.085 | no |
External links
@ref: 3871
culture collection no.: DSM 10251, ATCC 51440, JCM 21266, CECT 5396, CIP 104267, IAM 14591, IFO 16653, NBRC 16653
straininfo link
- @ref: 82862
- straininfo: 14988
literature
- topic: Phylogeny
- Pubmed-ID: 19625441
- title: Seohaeicola saemankumensis gen. nov., sp. nov., isolated from a tidal flat.
- authors: Yoon JH, Kang SJ, Lee SY, Oh KH, Oh TK
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.011312-0
- year: 2009
- mesh: DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/classification/genetics/*isolation & purification/metabolism, Seawater/*microbiology
- topic2: Metabolism
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
3871 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10251) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10251 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
35644 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/16157 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
82862 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID14988.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
116226 | Curators of the CIP | Collection of Institut Pasteur (CIP 104267) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104267 |