Strain identifier

BacDive ID: 136789

Type strain: No

Species: Escherichia coli

Strain Designation: PAP138b

Strain history: CIP <- 1998, A. Pugsley, Inst. Pasteur, Paris, France: strain PAP138b

NCBI tax ID(s): 562 (species)

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General

@ref: 36420

BacDive-ID: 136789

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-positive, rod-shaped

description: Escherichia coli PAP138b is a facultative anaerobe, mesophilic, Gram-positive bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

@refhistory
364201998, A. Pugsley, Inst. Pasteur, Paris, France: strain PAP138b
36420CIP <- 1998, A. Pugsley, Inst. Pasteur, Paris, France: strain PAP138b

doi: 10.13145/bacdive136789.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 36420

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

strain designation: PAP138b

type strain: no

Morphology

cell morphology

  • @ref: 36420
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 36420

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36420MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
36420CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
36420positivegrowth30mesophilic
36420positivegrowth30-41
36420nogrowth5psychrophilic
36420nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 36420
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3642029864mannitol+fermentation
3642016947citrate-carbon source
364204853esculin-hydrolysis
3642017234glucose+fermentation
3642017716lactose+fermentation
3642017632nitrate+reduction
3642016301nitrite+reduction
3642015792malonate-assimilation
36420132112sodium thiosulfate-builds gas from
3642017234glucose+degradation

antibiotic resistance

  • @ref: 36420
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 36420
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3642015688acetoin-
3642017234glucose+

enzymes

@refvalueactivityec
36420oxidase-
36420beta-galactosidase+3.2.1.23
36420alcohol dehydrogenase-1.1.1.1
36420gelatinase-
36420catalase+1.11.1.6
36420lysine decarboxylase+4.1.1.18
36420ornithine decarboxylase-4.1.1.17
36420tryptophan deaminase-
36420urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
36420-+---+----++-+++----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
36420+++++-+--+++-++----+++-++------+-+--+------++---++----++---++--------+-----+---++-+---+-----++-----

Safety information

risk assessment

  • @ref: 36420
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 36420

culture collection no.: CIP 105670, NCTC 50162

straininfo link

  • @ref: 93849
  • straininfo: 68427

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36420Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105670Collection of Institut Pasteur (CIP 105670)
68382Automatically annotated from API zym
93849Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID68427.1