Strain identifier

BacDive ID: 13676

Type strain: No

Species: Limimaricola hongkongensis

Strain Designation: UST950701-009W

Strain history: S. Lau UST950701-009W.

NCBI tax ID(s): 278132 (species)

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General

@ref: 7020

BacDive-ID: 13676

DSM-Number: 17493

keywords: 16S sequence, Bacteria, mesophilic

description: Limimaricola hongkongensis UST950701-009W is a mesophilic bacterium that was isolated from 7-day-old marine biofilm.

NCBI tax id

  • NCBI tax id: 278132
  • Matching level: species

strain history

@refhistory
7020<- S. C. K. Lau, Hong Kong Univ. Sci. and Technol.
67770S. Lau UST950701-009W.

doi: 10.13145/bacdive13676.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Limimaricola
  • species: Limimaricola hongkongensis
  • full scientific name: Limimaricola hongkongensis (Lau et al. 2004) Wirth and Whitman 2018

  • synonyms

    • @ref: 20215
    • synonym: Loktanella hongkongensis

@ref: 7020

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Limimaricola

species: Limimaricola hongkongensis

full scientific name: Limimaricola hongkongensis (Lau et al. 2004) Wirth and Whitman 2018

strain designation: UST950701-009W

type strain: no

Culture and growth conditions

culture medium

  • @ref: 7020
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperature
7020positivegrowth30
67770positivegrowth30

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
70207-day-old marine biofilmHong KongHKGAsia
67770Marine biofilm in Hong Kong waters

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Biofilm

taxonmaps

  • @ref: 69479
  • File name: preview.99_5744.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_59;97_62;98_67;99_5744&stattab=map
  • Last taxonomy: Limimaricola
  • 16S sequence: AY600301
  • Sequence Identity:
  • Total samples: 3727
  • soil counts: 214
  • aquatic counts: 3059
  • animal counts: 378
  • plant counts: 76

Safety information

risk assessment

  • @ref: 7020
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7020
  • description: Loktanella hongkongensis strain UST950701-009W 16S ribosomal RNA gene, partial sequence
  • accession: AY600301
  • length: 1336
  • database: nuccore
  • NCBI tax ID: 278132

GC content

  • @ref: 67770
  • GC-content: 65.8-66.6
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 7020

culture collection no.: DSM 17493, JCM 12480, NRRL B-41040

straininfo link

  • @ref: 82859
  • straininfo: 231906

literature

  • topic: Phylogeny
  • Pubmed-ID: 15545471
  • title: Loktanella hongkongensis sp. nov., a novel member of the alpha-Proteobacteria originating from marine biofilms in Hong Kong waters.
  • authors: Lau SCK, Tsoi MMY, Li X, Plakhotnikova I, Wu M, Wong PK, Qian PY
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63294-0
  • year: 2004
  • mesh: Aerobiosis, Bacterial Typing Techniques, Base Composition, *Biofilms, Carbohydrate Metabolism, Catalase/analysis, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Fatty Acids/analysis/isolation & purification, Genes, rRNA, Gentian Violet, Hong Kong, Hydrogen-Ion Concentration, Molecular Sequence Data, Movement, Oxidoreductases/analysis, Phenazines, Phylogeny, Pigments, Biological/biosynthesis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/cytology/*isolation & purification/physiology, Saline Solution, Hypertonic, Seawater/*microbiology, Sequence Analysis, DNA, Spores, Bacterial/cytology, Temperature, Water Microbiology, beta-Galactosidase/analysis
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitle
7020Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17493)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17493
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
82859Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID231906.1StrainInfo: A central database for resolving microbial strain identifiers