Strain identifier

BacDive ID: 136698

Type strain: Yes

Species: Achromobacter insuavis

Strain Designation: LiPuma AU15210, Vandamme R-47438

Strain history: CIP <- 2014, LMG <- 2012, P. Vandamme, Gent Univ., Gent, Belgium: strain Vandamme R-47438 <- 2008, J. Lipuma, Michigan Univ., Michigan, USA strain: LiPuma AU15210

NCBI tax ID(s): 1287735 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 36196

BacDive-ID: 136698

keywords: genome sequence, Bacteria, aerobe, mesophilic, motile

description: Achromobacter insuavis LiPuma AU15210 is an aerobe, mesophilic, motile bacterium of the family Alcaligenaceae.

NCBI tax id

  • NCBI tax id: 1287735
  • Matching level: species

strain history

  • @ref: 36196
  • history: CIP <- 2014, LMG <- 2012, P. Vandamme, Gent Univ., Gent, Belgium: strain Vandamme R-47438 <- 2008, J. Lipuma, Michigan Univ., Michigan, USA strain: LiPuma AU15210

doi: 10.13145/bacdive136698.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Achromobacter
  • species: Achromobacter insuavis
  • full scientific name: Achromobacter insuavis Vandamme et al. 2014

@ref: 36196

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter insuavis

strain designation: LiPuma AU15210, Vandamme R-47438

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes92.82
6948099.999negative
36196yesnegativerod-shaped

colony morphology

  • @ref: 62837
  • incubation period: 1 day

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36196MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
36196CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
36196positivegrowth30mesophilic
62837positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62837
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.978

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typesampling dateisolation date
36196USAUSANorth America
62837USAUSANorth AmericaHuman sputum,non-CF patient2008
36196United States of AmericaUSANorth AmericaHuman, Sputum2008

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Sputum
#Host#Human
#Infection#Patient

Safety information

risk assessment

  • @ref: 36196
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Achromobacter insuavis LMG 26845GCA_902859645contigncbi1287735
66792Achromobacter insuavis strain LMG 268451287735.15wgspatric1287735

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes88.591no
gram-positiveno98.39no
anaerobicno98.335yes
aerobicyes88.054yes
halophileno87.662no
spore-formingno93.921no
thermophileno99.769no
glucose-utilyes58.979no
flagellatedno57.266no
glucose-fermentno90.392no

External links

@ref: 36196

culture collection no.: CIP 110710, LMG 26845, CCUG 62426

straininfo link

  • @ref: 93791
  • straininfo: 376280

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23891345Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively.Vandamme P, Moore ER, Cnockaert M, Peeters C, Svensson-Stadler L, Houf K, Spilker T, LiPuma JJSyst Appl Microbiol10.1016/j.syapm.2013.06.0052013Achromobacter/chemistry/*classification/genetics/physiology, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Genotype, Molecular Sequence Data, Multilocus Sequence Typing, PhylogenyGenetics
Phylogeny27902206Achromobacter aloeverae sp. nov., isolated from the root of Aloe vera (L.) Burm.f.Kuncharoen N, Muramatsu Y, Shibata C, Kamakura Y, Nakagawa Y, Tanasupawat SInt J Syst Evol Microbiol10.1099/ijsem.0.0015662017Achromobacter/*classification/genetics/isolation & purification, Aloe/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thailand, Ubiquinone/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36196Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110710Collection of Institut Pasteur (CIP 110710)
62837Curators of the CCUGhttps://www.ccug.se/strain?id=62426Culture Collection University of Gothenburg (CCUG) (CCUG 62426)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
93791Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID376280.1