Strain identifier
BacDive ID: 136698
Type strain:
Species: Achromobacter insuavis
Strain Designation: LiPuma AU15210, Vandamme R-47438
Strain history: CIP <- 2014, LMG <- 2012, P. Vandamme, Gent Univ., Gent, Belgium: strain Vandamme R-47438 <- 2008, J. Lipuma, Michigan Univ., Michigan, USA strain: LiPuma AU15210
NCBI tax ID(s): 1287735 (species)
General
@ref: 36196
BacDive-ID: 136698
keywords: genome sequence, Bacteria, aerobe, mesophilic, motile
description: Achromobacter insuavis LiPuma AU15210 is an aerobe, mesophilic, motile bacterium of the family Alcaligenaceae.
NCBI tax id
- NCBI tax id: 1287735
- Matching level: species
strain history
- @ref: 36196
- history: CIP <- 2014, LMG <- 2012, P. Vandamme, Gent Univ., Gent, Belgium: strain Vandamme R-47438 <- 2008, J. Lipuma, Michigan Univ., Michigan, USA strain: LiPuma AU15210
doi: 10.13145/bacdive136698.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Achromobacter
- species: Achromobacter insuavis
- full scientific name: Achromobacter insuavis Vandamme et al. 2014
@ref: 36196
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Achromobacter
species: Achromobacter insuavis
strain designation: LiPuma AU15210, Vandamme R-47438
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 92.82 | ||
69480 | 99.999 | negative | ||
36196 | yes | negative | rod-shaped |
colony morphology
- @ref: 62837
- incubation period: 1 day
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
36196 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
36196 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
36196 | positive | growth | 30 | mesophilic |
62837 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 62837
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.978 |
Isolation, sampling and environmental information
isolation
@ref | country | origin.country | continent | sample type | sampling date | isolation date |
---|---|---|---|---|---|---|
36196 | USA | USA | North America | |||
62837 | USA | USA | North America | Human sputum,non-CF patient | 2008 | |
36196 | United States of America | USA | North America | Human, Sputum | 2008 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host Body Product | #Fluids | #Sputum |
#Host | #Human | |
#Infection | #Patient |
Safety information
risk assessment
- @ref: 36196
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Achromobacter insuavis LMG 26845 | GCA_902859645 | contig | ncbi | 1287735 |
66792 | Achromobacter insuavis strain LMG 26845 | 1287735.15 | wgs | patric | 1287735 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 88.591 | no |
gram-positive | no | 98.39 | no |
anaerobic | no | 98.335 | yes |
aerobic | yes | 88.054 | yes |
halophile | no | 87.662 | no |
spore-forming | no | 93.921 | no |
thermophile | no | 99.769 | no |
glucose-util | yes | 58.979 | no |
flagellated | no | 57.266 | no |
glucose-ferment | no | 90.392 | no |
External links
@ref: 36196
culture collection no.: CIP 110710, LMG 26845, CCUG 62426
straininfo link
- @ref: 93791
- straininfo: 376280
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 23891345 | Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively. | Vandamme P, Moore ER, Cnockaert M, Peeters C, Svensson-Stadler L, Houf K, Spilker T, LiPuma JJ | Syst Appl Microbiol | 10.1016/j.syapm.2013.06.005 | 2013 | Achromobacter/chemistry/*classification/genetics/physiology, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Genotype, Molecular Sequence Data, Multilocus Sequence Typing, Phylogeny | Genetics |
Phylogeny | 27902206 | Achromobacter aloeverae sp. nov., isolated from the root of Aloe vera (L.) Burm.f. | Kuncharoen N, Muramatsu Y, Shibata C, Kamakura Y, Nakagawa Y, Tanasupawat S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001566 | 2017 | Achromobacter/*classification/genetics/isolation & purification, Aloe/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thailand, Ubiquinone/chemistry | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
36196 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110710 | Collection of Institut Pasteur (CIP 110710) | |
62837 | Curators of the CCUG | https://www.ccug.se/strain?id=62426 | Culture Collection University of Gothenburg (CCUG) (CCUG 62426) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
93791 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID376280.1 |