Strain identifier

BacDive ID: 136691

Type strain: No

Species: Pandoraea sputorum

Strain history: CIP <- 1999, Lab. Ident. Inst. Pasteur, Paris, France: strain 399.79, Alcaligenes faecalis faecalis <- Private Lab. Lille, France

NCBI tax ID(s): 93222 (species)

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General

@ref: 36179

BacDive-ID: 136691

keywords: Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Pandoraea sputorum CIP 105849 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Burkholderiaceae.

NCBI tax id

  • NCBI tax id: 93222
  • Matching level: species

strain history

  • @ref: 36179
  • history: CIP <- 1999, Lab. Ident. Inst. Pasteur, Paris, France: strain 399.79, Alcaligenes faecalis faecalis <- Private Lab. Lille, France

doi: 10.13145/bacdive136691.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Pandoraea
  • species: Pandoraea sputorum
  • full scientific name: Pandoraea sputorum Coenye et al. 2000

@ref: 36179

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Pandoraea

species: Pandoraea sputorum

type strain: no

Morphology

cell morphology

  • @ref: 36179
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 36179

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36179MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
36179CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
36179positivegrowth30mesophilic
36179positivegrowth15-41
36179nogrowth5psychrophilic
36179nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 36179
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
36179NaClpositivegrowth0-4 %
36179NaClnogrowth6 %
36179NaClnogrowth8 %
36179NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3617916947citrate+carbon source
361794853esculin-hydrolysis
36179606565hippurate+hydrolysis
3617917632nitrate-builds gas from
3617917632nitrate+reduction
3617916301nitrite-builds gas from
3617916301nitrite-reduction
3617915792malonate-assimilation
3617917632nitrate-respiration

antibiotic resistance

  • @ref: 36179
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 36179
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3617915688acetoin-
3617917234glucose-

enzymes

@refvalueactivityec
36179oxidase+
36179beta-galactosidase-3.2.1.23
36179alcohol dehydrogenase-1.1.1.1
36179gelatinase-
36179amylase-
36179DNase-
36179caseinase-3.4.21.50
36179catalase+1.11.1.6
36179tween esterase-
36179gamma-glutamyltransferase+2.3.2.2
36179lecithinase-
36179lipase-
36179lysine decarboxylase-4.1.1.18
36179ornithine decarboxylase-4.1.1.17
36179phenylalanine ammonia-lyase-4.3.1.24
36179protease-
36179tryptophan deaminase-
36179urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
36179--++-+----++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
36179-------------------------------+---------------+++++-+++--+-++++-++++----+--+++++++-----+++++++-+++

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
36179LilleFranceFRAEurope
36179LilleFranceFRAEuropeHuman, Pus1979

Safety information

risk assessment

  • @ref: 36179
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 36179

culture collection no.: CIP 105849

straininfo link

  • @ref: 93786
  • straininfo: 67248

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36179Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105849Collection of Institut Pasteur (CIP 105849)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
93786Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID67248.1