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Strain identifier

BacDive ID: 136683

Type strain: No

Species: Pseudomonas stutzeri

NCBI tax ID(s): 203192 (species), 316 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 36169

BacDive-ID: 136683

keywords: genome sequence, Bacteria, aerobe, mesophilic

description: Pseudomonas stutzeri CIP 107689 is an aerobe, mesophilic bacterium of the family Pseudomonadaceae.

NCBI tax id

NCBI tax idMatching level
203192species
316species

doi: 10.13145/bacdive136683.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas stutzeri
  • full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Stutzerimonas chloritidismutans
    20215Pseudomonas perfectomarinus
    20215Bacterium stutzeri
    20215Pseudomonas kunmingensis
    20215Pseudomonas chloritidismutans
    20215Stutzerimonas kunmingensis
    20215Stutzerimonas stutzeri
    20215Stutzerimonas perfectomarina
    20215Pseudomonas perfectomarina

@ref: 36169

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas stutzeri

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes95.574
6948099.478negative

Culture and growth conditions

culture medium

  • @ref: 36169
  • name: MEDIUM 72- for trypto casein soja agar
  • growth: yes
  • composition: Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
36169positivegrowth30mesophilic
56397positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 56397
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 95.985

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 88.476

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
56397+-------+--+-+++-++-

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
36169DenmarkDNKEurope
56397Human urine

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Urine

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas stutzeri CCUG 44592GCA_002890835contigncbi316
66792Pseudomonas stutzeri strain CCUG 44592316.365wgspatric316
66792Stutzerimonas stutzeri ATCC 17591GCA_024448595contigncbi316
66792Klebsiella pneumoniae CRK0085GCA_002184985contigpatric573

External links

@ref: 36169

culture collection no.: CIP 107689, CCUG 44592, ATCC 17591

straininfo link

@refpassport
20218http://www.straininfo.net/strains/329738
20218http://www.straininfo.net/strains/329735
20218http://www.straininfo.net/strains/99258

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
36169Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5152 Collection of Institut Pasteur (CIP 107689)
56397Curators of the CCUGhttps://www.ccug.se/strain?id=44592Culture Collection University of Gothenburg (CCUG) (CCUG 44592)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes