Strain identifier

BacDive ID: 136683

Type strain: No

Species: Pseudomonas stutzeri

Strain history: CIP <- 2002, CCUG <- J. Lalucat and R. Rossello-Mora, Palma de Mallorca, Spain

NCBI tax ID(s): 203192 (species), 316 (species)

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General

@ref: 36169

BacDive-ID: 136683

keywords: genome sequence, Bacteria, aerobe, mesophilic, motile

description: Pseudomonas stutzeri CIP 107689 is an aerobe, mesophilic, motile bacterium of the family Pseudomonadaceae.

NCBI tax id

NCBI tax idMatching level
203192species
316species

strain history

  • @ref: 36169
  • history: CIP <- 2002, CCUG <- J. Lalucat and R. Rossello-Mora, Palma de Mallorca, Spain

doi: 10.13145/bacdive136683.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas stutzeri
  • full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Stutzerimonas chloritidismutans
    20215Pseudomonas perfectomarinus
    20215Bacterium stutzeri
    20215Pseudomonas kunmingensis
    20215Pseudomonas chloritidismutans
    20215Stutzerimonas kunmingensis
    20215Stutzerimonas stutzeri
    20215Stutzerimonas perfectomarina
    20215Pseudomonas perfectomarina

@ref: 36169

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas stutzeri

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.795
6948099.996negative
36169yesnegativerod-shaped

pigmentation

  • @ref: 36169
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36169MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
36169CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
36169positivegrowth30mesophilic
56397positivegrowth30mesophilic
36169positivegrowth25-41
36169nogrowth5psychrophilic
36169nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
56397aerobe
36169obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.956

halophily

@refsaltgrowthtested relationconcentration
36169NaClpositivegrowth0-4 %
36169NaClnogrowth6 %
36169NaClnogrowth8 %
36169NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
3616916947citrate+carbon source
361694853esculin-hydrolysis
3616917632nitrate+reduction
3616916301nitrite+reduction
3616917632nitrate+respiration

antibiotic resistance

  • @ref: 36169
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
3616935581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
36169oxidase+
36169beta-galactosidase-3.2.1.23
36169alcohol dehydrogenase-1.1.1.1
36169gelatinase-
36169amylase+
36169DNase-
36169caseinase-3.4.21.50
36169catalase+1.11.1.6
36169tween esterase+
36169lecithinase-
36169lipase-
36169lysine decarboxylase-4.1.1.18
36169ornithine decarboxylase-4.1.1.17
36169protease-
36169tryptophan deaminase-
36169urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
36169-+++++--+-++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
56397+-------+--+-+++-++-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
36169++-------++---------------+----+-+---------------++--++-----+--------------+++-++++-+--+++++++-+-++

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
36169DenmarkDNKEurope
56397Human urine
36169DenmarkDNKEuropeHuman, Urine

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Urine

Safety information

risk assessment

  • @ref: 36169
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Stutzerimonas stutzeri CCUG 44592GCA_002890835contigncbi316
66792Pseudomonas stutzeri strain CCUG 44592316.365wgspatric316
66792Stutzerimonas stutzeri ATCC 17591GCA_024448595contigncbi316

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.911no
anaerobicno97.729yes
halophileno79.352no
spore-formingno93.826no
glucose-utilyes91.653yes
motileyes88.144no
flagellatedyes90.249no
aerobicyes93.001yes
thermophileno99.694no
glucose-fermentno92.677yes

External links

@ref: 36169

culture collection no.: CIP 107689, CCUG 44592, ATCC 17591

straininfo link

  • @ref: 93778
  • straininfo: 36678

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36169Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107689Collection of Institut Pasteur (CIP 107689)
56397Curators of the CCUGhttps://www.ccug.se/strain?id=44592Culture Collection University of Gothenburg (CCUG) (CCUG 44592)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
93778Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID36678.1