Strain identifier
BacDive ID: 13662
Type strain: 
Species: Dinoroseobacter shibae
Strain history: <- H. Biebl <- M. Allgaier; DFL 12
NCBI tax ID(s): 398580 (strain), 215813 (species)
version 8.1 (current version)
General
@ref: 6375
BacDive-ID: 13662
DSM-Number: 16493
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, ovoid-shaped
description: Dinoroseobacter shibae DSM 16493 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Culture of Prorocentrum lima , dinoflagellate culture collection Helgoland.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 215813 | species |
| 398580 | strain |
strain history
- @ref: 6375
- history: <- H. Biebl <- M. Allgaier; DFL 12
doi: 10.13145/bacdive13662.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Dinoroseobacter
- species: Dinoroseobacter shibae
- full scientific name: Dinoroseobacter shibae Biebl et al. 2005
@ref: 6375
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Dinoroseobacter
species: Dinoroseobacter shibae
full scientific name: Dinoroseobacter shibae Biebl et al. 2005
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 31424 | negative | 0.65 µm | 0.5 µm | ovoid-shaped | yes | |
| 69480 | negative | 99.997 |
colony morphology
- @ref: 6375
- incubation period: 2-3 days
pigmentation
- @ref: 31424
- production: yes
Culture and growth conditions
culture medium
- @ref: 6375
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6375 | positive | growth | 30 | mesophilic |
| 31424 | positive | growth | 15-38 | |
| 31424 | positive | optimum | 33 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 31424 | positive | growth | 6.2-8.9 | alkaliphile |
| 31424 | positive | optimum | 7.75 |
Physiology and metabolism
oxygen tolerance
- @ref: 31424
- oxygen tolerance: aerobe
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.992
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31424 | NaCl | positive | growth | 1.0-7.0 % |
| 31424 | NaCl | positive | optimum | 4 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31424 | 30089 | acetate | + | carbon source |
| 31424 | 16947 | citrate | + | carbon source |
| 31424 | 28757 | fructose | + | carbon source |
| 31424 | 17234 | glucose | + | carbon source |
| 31424 | 29987 | glutamate | + | carbon source |
| 31424 | 17754 | glycerol | + | carbon source |
| 31424 | 24996 | lactate | + | carbon source |
| 31424 | 25115 | malate | + | carbon source |
| 31424 | 15361 | pyruvate | + | carbon source |
| 31424 | 30031 | succinate | + | carbon source |
| 31424 | 53426 | tween 80 | + | carbon source |
| 31424 | 17632 | nitrate | + | reduction |
| 68369 | 25115 | malate | - | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | - | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | - | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | - | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 6375 | catalase | + | 1.11.1.6 |
| 6375 | cytochrome-c oxidase | + | 1.9.3.1 |
| 31424 | gelatinase | + | |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6375 | + | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 6375
- sample type: Culture of Prorocentrum lima (isolated at seaside near Vigo, Spain), dinoflagellate culture collection Helgoland
- host species: Prorocentrum lima
- geographic location: Helgoland
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Laboratory | #Lab enrichment |
| #Host | #Protozoa | #Dinoflagellate |
taxonmaps
- @ref: 69479
- File name: preview.99_5016.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_2452;97_2993;98_3750;99_5016&stattab=map
- Last taxonomy: Dinoroseobacter shibae subclade
- 16S sequence: AJ534211
- Sequence Identity:
- Total samples: 1246
- soil counts: 76
- aquatic counts: 968
- animal counts: 190
- plant counts: 12
Safety information
risk assessment
- @ref: 6375
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 31424
- description: Dinoroseobacter shibae 16S rRNA gene, type strain DFL 12T
- accession: AJ534211
- length: 1262
- database: nuccore
- NCBI tax ID: 398580
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Dinoroseobacter shibae DFL 12 = DSM 16493 | GCA_000018145 | complete | ncbi | 398580 |
| 66792 | Dinoroseobacter shibae DFL 12 = DSM 16493 | 398580.32 | plasmid | patric | 398580 |
| 66792 | Dinoroseobacter shibae DFL 12 = DSM 16493 | 398580.30 | plasmid | patric | 398580 |
| 66792 | Dinoroseobacter shibae DFL 12 = DSM 16493 | 398580.31 | plasmid | patric | 398580 |
| 66792 | Dinoroseobacter shibae DFL 12 = DSM 16493 | 398580.34 | plasmid | patric | 398580 |
| 66792 | Dinoroseobacter shibae DFL 12 = DSM 16493 | 398580.33 | plasmid | patric | 398580 |
| 66792 | Dinoroseobacter shibae DFL-12, DSM 16493 | 2501004205 | complete | img | 398580 |
GC content
- @ref: 31424
- GC-content: 64.8
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 87 | no |
| motile | no | 50.563 | yes |
| flagellated | no | 86.866 | no |
| gram-positive | no | 98.579 | yes |
| anaerobic | no | 98.712 | yes |
| aerobic | yes | 90.896 | yes |
| halophile | yes | 79.375 | no |
| spore-forming | no | 96.022 | no |
| thermophile | no | 97.103 | yes |
| glucose-util | yes | 63.436 | no |
| glucose-ferment | no | 91.803 | yes |
External links
@ref: 6375
culture collection no.: DSM 16493, DFL 12
straininfo link
- @ref: 82845
- straininfo: 138979
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15879238 | Dinoroseobacter shibae gen. nov., sp. nov., a new aerobic phototrophic bacterium isolated from dinoflagellates. | Biebl H, Allgaier M, Tindall BJ, Koblizek M, Lunsdorf H, Pukall R, Wagner-Dobler I | Int J Syst Evol Microbiol | 10.1099/ijs.0.63511-0 | 2005 | Aerobiosis, Animals, Bacterial Typing Techniques, Bacteriochlorophyll A/isolation & purification, Carbon/metabolism, Carotenoids/isolation & purification, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Dinoflagellida/*microbiology, Fatty Acids/analysis, Flagella/physiology, Genes, rRNA, Gentian Violet, Growth Inhibitors/pharmacology, Hydrogen-Ion Concentration, Molecular Sequence Data, Movement, Nitrates/metabolism, Oxidation-Reduction, Phenazines, Photosystem II Protein Complex/analysis, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/cytology/*isolation & purification/physiology, Sequence Analysis, DNA, Sodium Chloride/pharmacology, Spectrum Analysis, Temperature | Enzymology |
| Phylogeny | 17684242 | Wenxinia marina gen. nov., sp. nov., a novel member of the Roseobacter clade isolated from oilfield sediments of the South China Sea. | Ying JY, Wang BJ, Dai X, Yang SS, Liu SJ, Liu ZP | Int J Syst Evol Microbiol | 10.1099/ijs.0.64825-0 | 2007 | China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Petroleum/metabolism, RNA, Ribosomal, 16S/genetics, Roseobacter/chemistry/*classification/genetics/metabolism, Seawater/*microbiology | Genetics |
| Genetics | 19741735 | The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea. | Wagner-Dobler I, Ballhausen B, Berger M, Brinkhoff T, Buchholz I, Bunk B, Cypionka H, Daniel R, Drepper T, Gerdts G, Hahnke S, Han C, Jahn D, Kalhoefer D, Kiss H, Klenk HP, Kyrpides N, Liebl W, Liesegang H, Meincke L, Pati A, Petersen J, Piekarski T, Pommerenke C, Pradella S, Pukall R, Rabus R, Stackebrandt E, Thole S, Thompson L, Tielen P, Tomasch J, von Jan M, Wanphrut N, Wichels A, Zech H, Simon M | ISME J | 10.1038/ismej.2009.94 | 2009 | Aerobiosis, Anaerobiosis, Biosynthetic Pathways/genetics, DNA, Bacterial/*chemistry/*genetics, Dimethyl Sulfoxide/metabolism, Eukaryota/growth & development/microbiology, *Genome, Bacterial, Molecular Sequence Data, Nitrates/metabolism, Plasmids, Rhodobacteraceae/*genetics/isolation & purification/physiology, *Sequence Analysis, DNA, Sequence Homology, *Symbiosis, Synteny, Thiamine/biosynthesis, Vitamin B 12/biosynthesis | Metabolism |
| Metabolism | 20021642 | Genetic tools for the investigation of Roseobacter clade bacteria. | Piekarski T, Buchholz I, Drepper T, Schobert M, Wagner-Doebler I, Tielen P, Jahn D | BMC Microbiol | 10.1186/1471-2180-9-265 | 2009 | Conjugation, Genetic, Electroporation/methods, Gene Knockout Techniques, Genes, Reporter, Genetic Vectors, Genetics, Microbial/*methods, Luminescent Proteins/genetics/metabolism, Molecular Biology/*methods, Plasmids, Roseobacter/*genetics | |
| Metabolism | 21908634 | Formation of polyhydroxyalkanoate in aerobic anoxygenic phototrophic bacteria and its relationship to carbon source and light availability. | Xiao N, Jiao N | Appl Environ Microbiol | 10.1128/AEM.05955-11 | 2011 | Aerobiosis, Bacteria/chemistry/*metabolism/ultrastructure, Carbon/*metabolism, DNA, Bacterial/chemistry/genetics, *Light, Magnetic Resonance Spectroscopy, Microscopy, Electron, Transmission, Molecular Sequence Data, *Photosynthesis, *Phototrophic Processes, Polyhydroxyalkanoates/*metabolism, Seawater/*microbiology, Sequence Analysis, DNA | Genetics |
| Phylogeny | 22847226 | Roseibacterium beibuensis sp. nov., a novel member of roseobacter clade isolated from Beibu Gulf in the South China Sea. | Mao Y, Wei J, Zheng Q, Xiao N, Li Q, Fu Y, Wang Y, Jiao N | Curr Microbiol | 10.1007/s00284-012-0192-6 | 2012 | Base Composition, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Oceans and Seas, Phylogeny, RNA, Ribosomal, 16S/genetics, Roseobacter/*classification/genetics/*isolation & purification/metabolism, Seawater/*microbiology | Metabolism |
| Metabolism | 24098096 | Swimming in light: a large-scale computational analysis of the metabolism of Dinoroseobacter shibae. | Rex R, Bill N, Schmidt-Hohagen K, Schomburg D | PLoS Comput Biol | 10.1371/journal.pcbi.1003224 | 2013 | Biomass, Computational Biology/*methods, Metabolic Flux Analysis, Metabolic Networks and Pathways/*genetics/*physiology, Rhodobacteraceae/*genetics/*metabolism/physiology | |
| Cultivation | 24386315 | Light enhances survival of Dinoroseobacter shibae during long-term starvation. | Soora M, Cypionka H | PLoS One | 10.1371/journal.pone.0083960 | 2013 | Adaptation, Physiological/radiation effects, Cell Proliferation/radiation effects, Culture Media/*chemistry, Dose-Response Relationship, Radiation, *Light, Rhodobacteraceae/*cytology/physiology/*radiation effects | |
| Metabolism | 24648520 | Gene regulatory and metabolic adaptation processes of Dinoroseobacter shibae DFL12T during oxygen depletion. | Laass S, Kleist S, Bill N, Druppel K, Kossmehl S, Wohlbrand L, Rabus R, Klein J, Rohde M, Bartsch A, Wittmann C, Schmidt-Hohagen K, Tielen P, Jahn D, Schomburg D | J Biol Chem | 10.1074/jbc.M113.545004 | 2014 | Adaptation, Physiological/*physiology, Bacterial Proteins/*biosynthesis/genetics, Denitrification/*physiology, Gene Expression Regulation, Bacterial/*physiology, Oxygen Consumption/*physiology, Rhodobacteraceae/genetics/*metabolism | |
| Enzymology | 25039543 | Discovery of the first light-dependent protochlorophyllide oxidoreductase in anoxygenic phototrophic bacteria. | Kaschner M, Loeschcke A, Krause J, Minh BQ, Heck A, Endres S, Svensson V, Wirtz A, von Haeseler A, Jaeger KE, Drepper T, Krauss U | Mol Microbiol | 10.1111/mmi.12719 | 2014 | Alphaproteobacteria/classification/*enzymology/genetics/isolation & purification, Amino Acid Sequence, Bacterial Proteins/chemistry/genetics/*metabolism, Biocatalysis/radiation effects, Light, Molecular Sequence Data, Oxidoreductases Acting on CH-CH Group Donors/chemistry/genetics/*metabolism, Oxygen/metabolism, Phototrophic Processes/radiation effects, Phylogeny, Protochlorophyllide/metabolism, Sequence Alignment, Triticum/microbiology | Phylogeny |
| 25595869 | Plasmid curing and the loss of grip--the 65-kb replicon of Phaeobacter inhibens DSM 17395 is required for biofilm formation, motility and the colonization of marine algae. | Frank O, Michael V, Pauker O, Boedeker C, Jogler C, Rohde M, Petersen J | Syst Appl Microbiol | 10.1016/j.syapm.2014.12.001 | 2014 | *Bacterial Adhesion, Biofilms/*growth & development, Genes, Bacterial, *Locomotion, *Plasmids, Replicon, Rhodobacteraceae/genetics/*physiology, Sequence Deletion | ||
| Genetics | 25685262 | Complete genome sequence of Roseophage vB_DshP-R1, which infects Dinoroseobacter shibae DFL12. | Ji J, Zhang R, Jiao N | Stand Genomic Sci | 10.1186/1944-3277-9-31 | 2015 | ||
| Genetics | 25795023 | Complete genome sequence of vB_DshP-R2C, a N4-like lytic roseophage. | Cai L, Yang Y, Jiao N, Zhang R | Mar Genomics | 10.1016/j.margen.2015.03.005 | 2015 | Base Sequence, Genome Components/*genetics, Genome, Viral/*genetics, Marine Biology, Molecular Sequence Data, Podoviridae/*genetics, Rhodobacteraceae/*virology, Sequence Analysis, DNA | Transcriptome |
| Genetics | 26380630 | Complete genome sequence of Roseophage vB_DshP-R1, which infects Dinoroseobacter shibae DFL12. | Ji J, Zhang R, Jiao N | Stand Genomic Sci | 10.1186/1944-3277-10-6 | 2015 | ||
| Genetics | 26413198 | Erratum to: 'Complete genome sequence of Roseophage vB_DshP-R1, which infects Dinoroseobacter shibae DFL12'. | Ji J, Zhang R, Jiao N | Stand Genomic Sci | 10.1186/s40793-015-0056-3 | 2015 | ||
| Metabolism | 26914854 | Dealing with salinity extremes and nitrogen limitation - an unexpected strategy of the marine bacterium Dinoroseobacter shibae. | Kleist S, Ulbrich M, Bill N, Schmidt-Hohagen K, Geffers R, Schomburg D | Environ Microbiol | 10.1111/1462-2920.13266 | 2016 | Nitrogen/*metabolism, Rhodobacteraceae/genetics/*metabolism, Salinity, Sodium Chloride/*metabolism | |
| Metabolism | 28371065 | Fixation of CO2 using the ethylmalonyl-CoA pathway in the photoheterotrophic marine bacterium Dinoroseobacter shibae. | Bill N, Tomasch J, Riemer A, Muller K, Kleist S, Schmidt-Hohagen K, Wagner-Dobler I, Schomburg D | Environ Microbiol | 10.1111/1462-2920.13746 | 2017 | Acyl Coenzyme A/genetics/*metabolism, Adaptation, Physiological, Bacterial Proteins/genetics/metabolism, Carbon Dioxide/*metabolism, Citric Acid Cycle, Light, Photosynthesis, Rhodobacteraceae/genetics/*metabolism/radiation effects, Transcriptome | Transcriptome |
| 28473821 | Boosted Membrane Potential as Bioenergetic Response to Anoxia in Dinoroseobacter shibae. | Kirchhoff C, Cypionka H | Front Microbiol | 10.3389/fmicb.2017.00695 | 2017 | |||
| Phylogeny | 28505134 | A Novel Roseosiphophage Isolated from the Oligotrophic South China Sea. | Yang Y, Cai L, Ma R, Xu Y, Tong Y, Huang Y, Jiao N, Zhang R | Viruses | 10.3390/v9050109 | 2017 | Base Composition, Base Sequence, Capsid/chemistry, China, DNA, Viral/analysis/genetics, Databases, Nucleic Acid, Genes, Viral/genetics, Genome, Viral, Host Specificity, Host-Parasite Interactions/physiology, Microscopy, Electron, Transmission, *Phylogeny, Podoviridae/*classification/*genetics/*isolation & purification/physiology, Roseobacter/*virology, Seawater/*virology, Sequence Analysis, DNA, Viral Proteins/genetics, Virus Latency | Genetics |
| Metabolism | 28765283 | Heme and nitric oxide binding by the transcriptional regulator DnrF from the marine bacterium Dinoroseobacter shibae increases napD promoter affinity. | Ebert M, Schweyen P, Broring M, Laass S, Hartig E, Jahn D | J Biol Chem | 10.1074/jbc.M117.798728 | 2017 | Apoproteins/chemistry/genetics/metabolism, Aquatic Organisms/enzymology/growth & development/*physiology, Bacterial Proteins/chemistry/genetics/*metabolism, Binding Sites, Dimerization, Electrophoretic Mobility Shift Assay, Gene Deletion, Gene Expression Regulation, Bacterial, Genes, Reporter, Heme/chemistry/*metabolism, Inverted Repeat Sequences, Kinetics, Multigene Family, Mutation, Nitrate Reductase/chemistry/genetics/*metabolism, Nitric Oxide/chemistry/*metabolism, Oxidoreductases/genetics/metabolism, *Promoter Regions, Genetic, Recombinant Fusion Proteins/chemistry/metabolism, Regulon, Rhodobacteraceae/enzymology/growth & development/*physiology, Stress, Physiological, Trans-Activators/chemistry/genetics/*metabolism | Enzymology |
| 28769910 | Plasmid Transfer in the Ocean - A Case Study from the Roseobacter Group. | Petersen J, Wagner-Dobler I | Front Microbiol | 10.3389/fmicb.2017.01350 | 2017 | |||
| Metabolism | 30222100 | Nitric oxide controls c-di-GMP turnover in Dinoroseobacter shibae. | Bedrunka P, Olbrisch F, Ruger M, Zehner S, Frankenberg-Dinkel N | Microbiology (Reading) | 10.1099/mic.0.000714 | 2018 | Cyclic GMP/*analogs & derivatives/metabolism, Escherichia coli Proteins/*genetics, Genome, Bacterial/genetics, Microbial Interactions/genetics, Nitric Oxide/*metabolism, Phosphoric Diester Hydrolases/*genetics, Phosphorus-Oxygen Lyases/*genetics, Rhodobacteraceae/*genetics/*metabolism | Genetics |
| Genetics | 31694663 | A newly isolated roseophage represents a distinct member of Siphoviridae family. | Cai L, Ma R, Chen H, Yang Y, Jiao N, Zhang R | Virol J | 10.1186/s12985-019-1241-6 | 2019 | Base Composition, DNA Packaging, Genetic Variation, Genome Size, Genome, Viral/genetics, Lysogeny, Metagenome, *Phylogeny, Roseobacter/*virology, Seawater/virology, Siphoviridae/*classification/*genetics/growth & development/ultrastructure, Viral Proteins/genetics | Phylogeny |
| Pathogenicity | 34425483 | Metabolism of chiral sulfonate compound 2,3-dihydroxypropane-1-sulfonate (DHPS) by Roseobacter bacteria in marine environment. | Chen X, Liu L, Gao X, Dai X, Han Y, Chen Q, Tang K | Environ Int | 10.1016/j.envint.2021.106829 | 2021 | Alkanesulfonates, Ecosystem, Humans, Proteomics, Rhodobacteraceae, *Roseobacter/genetics | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|---|
| 6375 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16493) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16493 | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 31424 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27731 | 28776041 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
| 68369 | Automatically annotated from API 20NE | ||||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 82845 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID138979.1 | StrainInfo: A central database for resolving microbial strain identifiers |