Strain identifier
BacDive ID: 13661
Type strain:
Species: Salipiger aestuarii
Strain Designation: AD8
Strain history: <- C. O. Jeon, Chung-Ang Univ., Seoul, Republic of Korea; AD8
NCBI tax ID(s): 568098 (species)
General
@ref: 16089
BacDive-ID: 13661
DSM-Number: 22011
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Salipiger aestuarii AD8 is a mesophilic, Gram-negative bacterium that was isolated from tidal flat sediment.
NCBI tax id
- NCBI tax id: 568098
- Matching level: species
strain history
- @ref: 16089
- history: <- C. O. Jeon, Chung-Ang Univ., Seoul, Republic of Korea; AD8
doi: 10.13145/bacdive13661.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Salipiger
- species: Salipiger aestuarii
- full scientific name: Salipiger aestuarii (Park et al. 2011) Wirth and Whitman 2018
synonyms
- @ref: 20215
- synonym: Citreicella aestuarii
@ref: 16089
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Salipiger
species: Salipiger aestuarii
full scientific name: Salipiger aestuarii (Park et al. 2011) Wirth and Whitman 2018
strain designation: AD8
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.999
colony morphology
- @ref: 16089
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 16089
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 16089
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.998 |
Isolation, sampling and environmental information
isolation
- @ref: 16089
- sample type: tidal flat sediment
- geographic location: Taean coast
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Tidal flat |
#Environmental | #Terrestrial | #Sediment |
Safety information
risk assessment
- @ref: 16089
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16089
- description: Citreicella aestuarii strain AD8 16S ribosomal RNA gene, complete sequence
- accession: FJ230833
- length: 1384
- database: ena
- NCBI tax ID: 568098
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Salipiger aestuarii AD8 | GCA_008930655 | contig | ncbi | 568098 |
66792 | Salipiger aestuarii DSM 22011 | GCA_003259905 | scaffold | ncbi | 568098 |
66792 | Salipiger aestuarii strain AD8 | 568098.6 | wgs | patric | 568098 |
66792 | Salipiger aestuarii strain DSM 22011 | 568098.3 | wgs | patric | 568098 |
66792 | Salipiger aestuarii DSM 22011 | 2615840712 | draft | img | 568098 |
GC content
- @ref: 16089
- GC-content: 67.5
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 50.757 | no |
flagellated | no | 80.231 | no |
gram-positive | no | 98.449 | no |
anaerobic | no | 93.933 | no |
aerobic | yes | 76.776 | no |
halophile | yes | 71.615 | no |
spore-forming | no | 96.335 | no |
glucose-util | yes | 84.557 | no |
thermophile | no | 94.904 | yes |
glucose-ferment | no | 90.607 | no |
External links
@ref: 16089
culture collection no.: DSM 22011, KACC 13699
straininfo link
- @ref: 82844
- straininfo: 403147
literature
- topic: Phylogeny
- Pubmed-ID: 21131501
- title: Citreicella aestuarii sp. nov., isolated from a tidal flat.
- authors: Park MS, Chung BS, Lee HJ, Jin HM, Lee SS, Oh YK, Jeon CO
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.028332-0
- year: 2010
- mesh: Base Composition, DNA, Bacterial/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/*isolation & purification/metabolism, Seawater/*microbiology
- topic2: Metabolism
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
16089 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22011) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22011 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
82844 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID403147.1 | StrainInfo: A central database for resolving microbial strain identifiers |