Strain identifier

BacDive ID: 13661

Type strain: Yes

Species: Salipiger aestuarii

Strain Designation: AD8

Strain history: <- C. O. Jeon, Chung-Ang Univ., Seoul, Republic of Korea; AD8

NCBI tax ID(s): 568098 (species)

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General

@ref: 16089

BacDive-ID: 13661

DSM-Number: 22011

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Salipiger aestuarii AD8 is a mesophilic, Gram-negative bacterium that was isolated from tidal flat sediment.

NCBI tax id

  • NCBI tax id: 568098
  • Matching level: species

strain history

  • @ref: 16089
  • history: <- C. O. Jeon, Chung-Ang Univ., Seoul, Republic of Korea; AD8

doi: 10.13145/bacdive13661.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Salipiger
  • species: Salipiger aestuarii
  • full scientific name: Salipiger aestuarii (Park et al. 2011) Wirth and Whitman 2018
  • synonyms

    • @ref: 20215
    • synonym: Citreicella aestuarii

@ref: 16089

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Salipiger

species: Salipiger aestuarii

full scientific name: Salipiger aestuarii (Park et al. 2011) Wirth and Whitman 2018

strain designation: AD8

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.999

colony morphology

  • @ref: 16089
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

  • @ref: 16089
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 16089
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.998

Isolation, sampling and environmental information

isolation

  • @ref: 16089
  • sample type: tidal flat sediment
  • geographic location: Taean coast
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Tidal flat
#Environmental#Terrestrial#Sediment

Safety information

risk assessment

  • @ref: 16089
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16089
  • description: Citreicella aestuarii strain AD8 16S ribosomal RNA gene, complete sequence
  • accession: FJ230833
  • length: 1384
  • database: ena
  • NCBI tax ID: 568098

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salipiger aestuarii AD8GCA_008930655contigncbi568098
66792Salipiger aestuarii DSM 22011GCA_003259905scaffoldncbi568098
66792Salipiger aestuarii strain AD8568098.6wgspatric568098
66792Salipiger aestuarii strain DSM 22011568098.3wgspatric568098
66792Salipiger aestuarii DSM 220112615840712draftimg568098

GC content

  • @ref: 16089
  • GC-content: 67.5
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno50.757no
flagellatedno80.231no
gram-positiveno98.449no
anaerobicno93.933no
aerobicyes76.776no
halophileyes71.615no
spore-formingno96.335no
glucose-utilyes84.557no
thermophileno94.904yes
glucose-fermentno90.607no

External links

@ref: 16089

culture collection no.: DSM 22011, KACC 13699

straininfo link

  • @ref: 82844
  • straininfo: 403147

literature

  • topic: Phylogeny
  • Pubmed-ID: 21131501
  • title: Citreicella aestuarii sp. nov., isolated from a tidal flat.
  • authors: Park MS, Chung BS, Lee HJ, Jin HM, Lee SS, Oh YK, Jeon CO
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.028332-0
  • year: 2010
  • mesh: Base Composition, DNA, Bacterial/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/*isolation & purification/metabolism, Seawater/*microbiology
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
16089Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22011)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22011
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82844Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID403147.1StrainInfo: A central database for resolving microbial strain identifiers