Strain identifier

BacDive ID: 136609

Type strain: No

Species: Streptococcus pyogenes

Strain Designation: 4990

Strain history: CIP <- 1956, R. Wahl: strain A7 t4, Streptococcus pyogenes <- Williams, Public Hlth. Lab., Colindale, London, UK: strain 4990 <- Griffith

NCBI tax ID(s): 1314 (species)

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General

@ref: 36068

BacDive-ID: 136609

keywords: genome sequence, Bacteria, microaerophile, mesophilic

description: Streptococcus pyogenes 4990 is a microaerophile, mesophilic bacterium that was isolated from Unknown source.

NCBI tax id

  • NCBI tax id: 1314
  • Matching level: species

strain history

  • @ref: 36068
  • history: CIP <- 1956, R. Wahl: strain A7 t4, Streptococcus pyogenes <- Williams, Public Hlth. Lab., Colindale, London, UK: strain 4990 <- Griffith

doi: 10.13145/bacdive136609.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus pyogenes
  • full scientific name: Streptococcus pyogenes Rosenbach 1884 (Approved Lists 1980)

@ref: 36068

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus pyogenes

strain designation: 4990

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no92.72
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36068MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
36068CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperaturerange
36068positivegrowth37mesophilic
45613positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 45613
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.99

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838129016arginine+hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose+builds acid from
6838116634raffinose-builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin+builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen+builds acid from
6838127941pullulan+builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase+3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase+3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
45613+----+---++-+--+-+-+---+++--+---

Isolation, sampling and environmental information

isolation

  • @ref: 36068
  • sample type: Unknown source

Safety information

risk assessment

  • @ref: 36068
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus pyogenes NCTC8326GCA_900475115completencbi1314
66792Streptococcus pyogenes strain NCTC83261314.743completepatric1314
66792Streptococcus pyogenes sv. Lacefield Group A NCTC 83262909170855completeimg1314

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno98.616no
gram-positiveyes92.981no
anaerobicno97.063yes
aerobicno94.909yes
halophileyes84.38no
spore-formingno95.032no
thermophileno98.907no
glucose-utilyes89.175no
motileno96.233no
glucose-fermentyes82.979no

External links

@ref: 36068

culture collection no.: CIP 56.45, NCTC 8326, CCUG 11875

straininfo link

  • @ref: 93724
  • straininfo: 70458

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
36068Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2056.45Collection of Institut Pasteur (CIP 56.45)
45613Curators of the CCUGhttps://www.ccug.se/strain?id=11875Culture Collection University of Gothenburg (CCUG) (CCUG 11875)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68381Automatically annotated from API rID32STR
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
93724Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID70458.1