Strain identifier
BacDive ID: 13659
Type strain:
Species: Salipiger thiooxidans
Strain history: <- D. Y. Sorokin; CHLG 1
NCBI tax ID(s): 282683 (species)
General
@ref: 3821
BacDive-ID: 13659
DSM-Number: 10146
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Salipiger thiooxidans DSM 10146 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sea water.
NCBI tax id
- NCBI tax id: 282683
- Matching level: species
strain history
- @ref: 3821
- history: <- D. Y. Sorokin; CHLG 1
doi: 10.13145/bacdive13659.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Salipiger
- species: Salipiger thiooxidans
- full scientific name: Salipiger thiooxidans (Sorokin et al. 2006) Wirth and Whitman 2018
synonyms
- @ref: 20215
- synonym: Citreicella thiooxidans
@ref: 3821
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Salipiger
species: Salipiger thiooxidans
full scientific name: Salipiger thiooxidans (Sorokin et al. 2006) Wirth and Whitman 2018
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.997
colony morphology
- @ref: 3821
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 3821
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 3821
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 3821
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.991 |
Isolation, sampling and environmental information
isolation
- @ref: 3821
- sample type: sea water
- geographic location: Black Sea
- country: Russia
- origin.country: RUS
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_5303.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_601;97_704;98_3951;99_5303&stattab=map
- Last taxonomy: Salipiger thiooxidans subclade
- 16S sequence: AY639887
- Sequence Identity:
- Total samples: 1082
- soil counts: 45
- aquatic counts: 816
- animal counts: 212
- plant counts: 9
Safety information
risk assessment
- @ref: 3821
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Citricella thiooxidans strain CHLG 1 16S ribosomal RNA gene, partial sequence
- accession: AY639887
- length: 1369
- database: ena
- NCBI tax ID: 282683
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Salipiger thiooxidans DSM 10146 | GCA_900102075 | scaffold | ncbi | 282683 |
66792 | Salipiger thiooxidans strain DSM 10146 | 282683.6 | wgs | patric | 282683 |
66792 | Salipiger thiooxidans DSM 10146 | 2615840719 | draft | img | 282683 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 74.769 | no |
flagellated | no | 87.374 | no |
gram-positive | no | 98.609 | no |
anaerobic | no | 94.603 | no |
aerobic | yes | 86.319 | no |
halophile | yes | 62.435 | no |
spore-forming | no | 94.864 | no |
glucose-ferment | no | 90.019 | no |
thermophile | no | 98.892 | yes |
glucose-util | yes | 91.054 | no |
External links
@ref: 3821
culture collection no.: DSM 10146, CHLG 1, UNIQEM 228
straininfo link
- @ref: 82842
- straininfo: 361245
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 16261857 | Citreicella thiooxidans gen. nov., sp. nov., a novel lithoheterotrophic sulfur-oxidizing bacterium from the Black Sea. | Sorokin DY, Tourova TP, Muyzer G | Syst Appl Microbiol | 10.1016/j.syapm.2005.05.006 | 2005 | Alphaproteobacteria/*classification/*physiology, Base Composition, Culture Media, Genome, Bacterial, Hydrogen-Ion Concentration, *Marine Biology, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Russia, Sodium Chloride, Species Specificity, Sulfides/metabolism, Sulfur/*metabolism, Temperature, Thiosulfates/metabolism, *Water Microbiology | Genetics |
Phylogeny | 20418414 | Citreicella marina sp. nov., isolated from deep-sea sediment. | Lai Q, Fu Y, Wang J, Chen S, Zhong H, Sun F, Shao Z | Int J Syst Evol Microbiol | 10.1099/ijs.0.022376-0 | 2010 | Base Composition, Catalase/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Gelatin/metabolism, Geologic Sediments/*microbiology, Indian Ocean, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/*isolation & purification/physiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Thiosulfates/metabolism | Metabolism |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
3821 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10146) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10146 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
82842 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID361245.1 | StrainInfo: A central database for resolving microbial strain identifiers |