Strain identifier

BacDive ID: 136424

Type strain: No

Species: Campylobacter sputorum

Strain history: CIP <- 1998, CCUG <- 1992, H. Lior, LCDC, Ottawa, Canada: strain LCDC 12978

NCBI tax ID(s): 206 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 35842

BacDive-ID: 136424

keywords: genome sequence, Bacteria, mesophilic, motile

description: Campylobacter sputorum CIP 105555 is a mesophilic, motile bacterium of the family Campylobacteraceae.

NCBI tax id

  • NCBI tax id: 206
  • Matching level: species

strain history

  • @ref: 35842
  • history: CIP <- 1998, CCUG <- 1992, H. Lior, LCDC, Ottawa, Canada: strain LCDC 12978

doi: 10.13145/bacdive136424.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter sputorum
  • full scientific name: Campylobacter sputorum (Prévot 1940) Véron and Chatelain 1973 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Vibrio sputorum

@ref: 35842

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter sputorum

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes91.321
6948099.995negative
35842yesnegativerod-shaped

colony morphology

  • @ref: 35842

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35842MEDIUM 262 - Columbia agar with 30 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (300.000 ml)
35842Brucella brothyes
35842CIP Medium 262yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=262

culture temp

@refgrowthtypetemperaturerange
35842positivegrowth37mesophilic
35842positivegrowth25-41
35842nogrowth5psychrophilic
35842nogrowth10psychrophilic
35842nogrowth45thermophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.998

halophily

  • @ref: 35842
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
35842606565hippurate-hydrolysis
3584217632nitrate+reduction
3584216301nitrite+reduction

antibiotic resistance

  • @ref: 35842
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 35842
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
35842oxidase+
35842gelatinase-
35842catalase-1.11.1.6
35842gamma-glutamyltransferase-2.3.2.2
35842urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • @reffatty acidpercentageECL
    50130C12:00.512
    50130C14:019.914
    50130C16:023.516
    50130C18:00.418
    50130C13:0 ISO 2OH0.713.814
    50130C13:1 at 12-130.412.931
    50130C14:0 3OH/C16:1 ISO I5.615.485
    50130C16:0 3OH4.417.52
    50130C16:1 ω7c8.415.819
    50130C18:1 ω7c /12t/9t34.517.824
    50130C18:2 ω6,9c/C18:0 ANTE0.917.724
    50130Unidentified0.4
    50130unknown 14.5030.614.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG
  • @reffatty acidpercentageECL
    50130C12:00.512
    50130C14:018.614
    50130C16:022.616
    50130C12:0 ALDE ?0.710.915
    50130C13:0 ISO 2OH0.713.814
    50130C13:1 at 12-131.112.931
    50130C14:0 3OH/C16:1 ISO I4.815.485
    50130C16:0 3OH3.717.52
    50130C16:1 ω7c8.615.819
    50130C18:1 ω7c /12t/9t37.517.824
    50130C18:2 ω6,9c/C18:0 ANTE0.717.724
    50130unknown 14.5030.614.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
35842-+++------++---+----

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typesampling dateisolation date
35842OttawaCanadaCANNorth America
50130OttawaCanadaCANNorth AmericaHuman stool1990
35842OttawaCanadaCANNorth AmericaHuman, Stool1990

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Human

Safety information

risk assessment

  • @ref: 35842
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter sputorum bv. paraureolyticus LMG 11764 LMG 17589GCA_002220755completencbi1032066
66792Campylobacter sputorum bv. paraureolyticus LMG 117641032066.3completepatric1032066

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes62.227no
gram-positiveno99.031no
anaerobicno54.154no
aerobicno98.615no
halophileno82.862no
spore-formingno96.058no
thermophileno72.804yes
glucose-utilno87.686no
motileyes88.001no
glucose-fermentno83.595no

External links

@ref: 35842

culture collection no.: CIP 105555, CCUG 30522, LMG 11764, LCDC 12978

straininfo link

  • @ref: 93585
  • straininfo: 264336

literature

  • topic: Phylogeny
  • Pubmed-ID: 9542089
  • title: Emended description of Campylobacter sputorum and revision of its infrasubspecific (biovar) divisions, including C. sputorum biovar paraureolyticus, a urease-producing variant from cattle and humans.
  • authors: On SL, Atabay HI, Corry JE, Harrington CS, Vandamme P
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-48-1-195
  • year: 1998
  • mesh: Animals, Bacteriological Techniques, Campylobacter/*classification/*enzymology/genetics, Campylobacter Infections/*diagnosis/veterinary, Catalase/metabolism, Cattle, Cattle Diseases/*microbiology, DNA, Bacterial/analysis, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Polymerase Chain Reaction, RNA, Bacterial/analysis, RNA, Ribosomal, 16S/analysis, Sequence Analysis, DNA, Urease/*metabolism
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35842Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105555Collection of Institut Pasteur (CIP 105555)
50130Curators of the CCUGhttps://www.ccug.se/strain?id=30522Culture Collection University of Gothenburg (CCUG) (CCUG 30522)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
93585Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID264336.1