Strain identifier
BacDive ID: 136424
Type strain:
Species: Campylobacter sputorum
Strain history: CIP <- 1998, CCUG <- 1992, H. Lior, LCDC, Ottawa, Canada: strain LCDC 12978
NCBI tax ID(s): 206 (species)
version 8.1 (current version)
General
@ref: 35842
BacDive-ID: 136424
keywords: genome sequence, Bacteria, mesophilic, motile
description: Campylobacter sputorum CIP 105555 is a mesophilic, motile bacterium of the family Campylobacteraceae.
NCBI tax id
- NCBI tax id: 206
- Matching level: species
strain history
- @ref: 35842
- history: CIP <- 1998, CCUG <- 1992, H. Lior, LCDC, Ottawa, Canada: strain LCDC 12978
doi: 10.13145/bacdive136424.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Campylobacteraceae
- genus: Campylobacter
- species: Campylobacter sputorum
- full scientific name: Campylobacter sputorum (Prévot 1940) Véron and Chatelain 1973 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Vibrio sputorum
@ref: 35842
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Campylobacter
species: Campylobacter sputorum
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 91.321 | ||
69480 | 99.995 | negative | ||
35842 | yes | negative | rod-shaped |
colony morphology
- @ref: 35842
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
35842 | MEDIUM 262 - Columbia agar with 30 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (300.000 ml) | |
35842 | Brucella broth | yes | ||
35842 | CIP Medium 262 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=262 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
35842 | positive | growth | 37 | mesophilic |
35842 | positive | growth | 25-41 | |
35842 | no | growth | 5 | psychrophilic |
35842 | no | growth | 10 | psychrophilic |
35842 | no | growth | 45 | thermophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.998 |
halophily
- @ref: 35842
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 3.5 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
35842 | 606565 | hippurate | - | hydrolysis |
35842 | 17632 | nitrate | + | reduction |
35842 | 16301 | nitrite | + | reduction |
antibiotic resistance
- @ref: 35842
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 35842
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
35842 | oxidase | + | |
35842 | gelatinase | - | |
35842 | catalase | - | 1.11.1.6 |
35842 | gamma-glutamyltransferase | - | 2.3.2.2 |
35842 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
fatty acid profile
@ref fatty acid percentage ECL 50130 C12:0 0.5 12 50130 C14:0 19.9 14 50130 C16:0 23.5 16 50130 C18:0 0.4 18 50130 C13:0 ISO 2OH 0.7 13.814 50130 C13:1 at 12-13 0.4 12.931 50130 C14:0 3OH/C16:1 ISO I 5.6 15.485 50130 C16:0 3OH 4.4 17.52 50130 C16:1 ω7c 8.4 15.819 50130 C18:1 ω7c /12t/9t 34.5 17.824 50130 C18:2 ω6,9c/C18:0 ANTE 0.9 17.724 50130 Unidentified 0.4 50130 unknown 14.503 0.6 14.503 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
@ref fatty acid percentage ECL 50130 C12:0 0.5 12 50130 C14:0 18.6 14 50130 C16:0 22.6 16 50130 C12:0 ALDE ? 0.7 10.915 50130 C13:0 ISO 2OH 0.7 13.814 50130 C13:1 at 12-13 1.1 12.931 50130 C14:0 3OH/C16:1 ISO I 4.8 15.485 50130 C16:0 3OH 3.7 17.52 50130 C16:1 ω7c 8.6 15.819 50130 C18:1 ω7c /12t/9t 37.5 17.824 50130 C18:2 ω6,9c/C18:0 ANTE 0.7 17.724 50130 unknown 14.503 0.6 14.503 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
35842 | - | + | + | + | - | - | - | - | - | - | + | + | - | - | - | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | geographic location | country | origin.country | continent | sample type | sampling date | isolation date |
---|---|---|---|---|---|---|---|
35842 | Ottawa | Canada | CAN | North America | |||
50130 | Ottawa | Canada | CAN | North America | Human stool | 1990 | |
35842 | Ottawa | Canada | CAN | North America | Human, Stool | 1990 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
#Host | #Human |
Safety information
risk assessment
- @ref: 35842
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Campylobacter sputorum bv. paraureolyticus LMG 11764 LMG 17589 | GCA_002220755 | complete | ncbi | 1032066 |
66792 | Campylobacter sputorum bv. paraureolyticus LMG 11764 | 1032066.3 | complete | patric | 1032066 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | yes | 62.227 | no |
gram-positive | no | 99.031 | no |
anaerobic | no | 54.154 | no |
aerobic | no | 98.615 | no |
halophile | no | 82.862 | no |
spore-forming | no | 96.058 | no |
thermophile | no | 72.804 | yes |
glucose-util | no | 87.686 | no |
motile | yes | 88.001 | no |
glucose-ferment | no | 83.595 | no |
External links
@ref: 35842
culture collection no.: CIP 105555, CCUG 30522, LMG 11764, LCDC 12978
straininfo link
- @ref: 93585
- straininfo: 264336
literature
- topic: Phylogeny
- Pubmed-ID: 9542089
- title: Emended description of Campylobacter sputorum and revision of its infrasubspecific (biovar) divisions, including C. sputorum biovar paraureolyticus, a urease-producing variant from cattle and humans.
- authors: On SL, Atabay HI, Corry JE, Harrington CS, Vandamme P
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-48-1-195
- year: 1998
- mesh: Animals, Bacteriological Techniques, Campylobacter/*classification/*enzymology/genetics, Campylobacter Infections/*diagnosis/veterinary, Catalase/metabolism, Cattle, Cattle Diseases/*microbiology, DNA, Bacterial/analysis, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Polymerase Chain Reaction, RNA, Bacterial/analysis, RNA, Ribosomal, 16S/analysis, Sequence Analysis, DNA, Urease/*metabolism
- topic2: Metabolism
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
35842 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105555 | Collection of Institut Pasteur (CIP 105555) | |
50130 | Curators of the CCUG | https://www.ccug.se/strain?id=30522 | Culture Collection University of Gothenburg (CCUG) (CCUG 30522) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68382 | Automatically annotated from API zym | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
93585 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID264336.1 |