Strain identifier

BacDive ID: 136351

Type strain: No

Species: Actinomyces viscosus

Strain history: CIP <- 1996, NCTC <- 1974, ATCC <- A. Howell, NIH, Bethesda, USA: strain HS-69, Odontomyces viscosus

NCBI tax ID(s): 1656 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 35742

BacDive-ID: 136351

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, rod-shaped

description: Actinomyces viscosus CIP 104871 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from Hampster.

NCBI tax id

  • NCBI tax id: 1656
  • Matching level: species

strain history

@refhistory
67770N. Maeda TPR-10 <-- ATCC 15988 <-- A. Howell, Jr. HS-69.
35742CIP <- 1996, NCTC <- 1974, ATCC <- A. Howell, NIH, Bethesda, USA: strain HS-69, Odontomyces viscosus

doi: 10.13145/bacdive136351.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Actinomycetales
  • family: Actinomycetaceae
  • genus: Actinomyces
  • species: Actinomyces viscosus
  • full scientific name: Actinomyces viscosus (Howell et al. 1965) Georg et al. 1969 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Odontomyces viscosus

@ref: 35742

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Actinomyces

species: Actinomyces viscosus

type strain: no

Morphology

cell morphology

  • @ref: 35742
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 35742
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35742MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
35742CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
35742positivegrowth37mesophilic
67770positivegrowth37mesophilic
35742positivegrowth25-41
35742nogrowth10psychrophilic
35742nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 35742
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
35742NaClpositivegrowth0-4 %
35742NaClnogrowth6 %
35742NaClnogrowth8 %
35742NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate+builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose+builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371raffinose+builds acid from16634
68371melezitose-builds acid from6731
68371inulin+builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol+builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose+builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose+builds acid from17108
68371erythritol-builds acid from17113
35742citrate-carbon source16947
35742esculin-hydrolysis4853
35742hippurate+hydrolysis606565
35742nitrate+reduction17632
35742nitrite-reduction16301
35742nitrate+respiration17632

metabolite production

  • @ref: 35742
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3574215688acetoin-
3574217234glucose+

enzymes

@refvalueactivityec
35742oxidase-
35742beta-galactosidase+3.2.1.23
35742alcohol dehydrogenase-1.1.1.1
35742gelatinase-
35742amylase-
35742DNase-
35742caseinase-3.4.21.50
35742catalase+1.11.1.6
35742tween esterase-
35742gamma-glutamyltransferase-2.3.2.2
35742lecithinase-
35742lipase-
35742lysine decarboxylase-4.1.1.18
35742ornithine decarboxylase-4.1.1.17
35742phenylalanine ammonia-lyase-4.3.1.24
35742tryptophan deaminase-
35742urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
35742-+++-+----+-++-++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
35742+/--+++----++++-+-++---+-++++++++++-++/---++---+--++-

Isolation, sampling and environmental information

isolation

@refsample type
52140Hampster
67770Hamster
35742Animal, Hamster

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Rodentia (Other)

taxonmaps

  • @ref: 69479
  • File name: preview.99_101023.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_124;96_361;97_1837;98_69020;99_101023&stattab=map
  • Last taxonomy: Actinomyces
  • 16S sequence: LC037217
  • Sequence Identity:
  • Total samples: 551
  • soil counts: 4
  • aquatic counts: 1
  • animal counts: 543
  • plant counts: 3

Safety information

risk assessment

  • @ref: 35742
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Actinomyces viscosus gene for 16S ribosomal RNA, partial sequence, strain: JCM 8351
  • accession: LC037217
  • length: 1502
  • database: ena
  • NCBI tax ID: 1656

External links

@ref: 35742

culture collection no.: CIP 104871, ATCC 15988, NCTC 10952, CIP 104838, JCM 8351, CCUG 34489

straininfo link

  • @ref: 93521
  • straininfo: 36610

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35742Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104871Collection of Institut Pasteur (CIP 104871)
52140Curators of the CCUGhttps://www.ccug.se/strain?id=34489Culture Collection University of Gothenburg (CCUG) (CCUG 34489)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
93521Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID36610.1