Strain identifier
BacDive ID: 13628
Type strain:
Species: Rhizobium sullae
Strain Designation: IS123, RHIS123
Strain history: <- A. Squartini; IS123 <- F. Temprano, Sevilla, Spain
NCBI tax ID(s): 50338 (species)
General
@ref: 5416
BacDive-ID: 13628
DSM-Number: 14623
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Rhizobium sullae IS123 is a mesophilic bacterium that was isolated from root nodules of Hedysarum coronarium.
NCBI tax id
- NCBI tax id: 50338
- Matching level: species
strain history
- @ref: 5416
- history: <- A. Squartini; IS123 <- F. Temprano, Sevilla, Spain
doi: 10.13145/bacdive13628.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Rhizobium
- species: Rhizobium sullae
- full scientific name: Rhizobium sullae Squartini et al. 2002
@ref: 5416
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Rhizobiaceae
genus: Rhizobium
species: Rhizobium sullae
full scientific name: Rhizobium sullae Squartini et al. 2002
strain designation: IS123, RHIS123
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5416
- name: RHIZOBIUM MEDIUM (DSMZ Medium 98)
- growth: yes
- link: https://mediadive.dsmz.de/medium/98
- composition: Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water
culture temp
- @ref: 5416
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 5416
- sample type: root nodules of Hedysarum coronarium
- host species: Hedysarum coronarium
- geographic location: Cadiz
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Root nodule |
Safety information
risk assessment
- @ref: 5416
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Rhizobium sullae partial 16S rRNA gene, type strain IS 123T
- accession: Y10170
- length: 1370
- database: ena
- NCBI tax ID: 50338
Genome sequences
- @ref: 66792
- description: Rhizobium sullae DSM 14623
- accession: 2738541313
- assembly level: draft
- database: img
- NCBI tax ID: 50338
External links
@ref: 5416
culture collection no.: DSM 14623, USDA 4950
straininfo link
- @ref: 82814
- straininfo: 100906
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 12148639 | Rhizobium sullae sp. nov. (formerly 'Rhizobium hedysari'), the root-nodule microsymbiont of Hedysarum coronarium L. | Squartini A, Struffi P, Doring H, Selenska-Pobell S, Tola E, Giacomini A, Vendramin E, Velazquez E, Mateos PF, Martinez-Molina E, Dazzo FB, Casella S, Nuti MP | Int J Syst Evol Microbiol | 10.1099/00207713-52-4-1267 | 2002 | Acyltransferases/genetics, Bacterial Proteins, DNA, Ribosomal, Electrophoresis/methods, Fabaceae/growth & development/*microbiology, Hydrogen-Ion Concentration, Microscopy, Electron, Molecular Sequence Data, *Nitrogen Fixation/genetics, Nucleic Acid Hybridization, Plant Roots/*microbiology, RNA, Ribosomal, 16S, Restriction Mapping, Rhizobium/*classification/genetics, Sequence Alignment, Soil/analysis, *Symbiosis, rRNA Operon | Genetics |
Phylogeny | 19567587 | Rhizobium mesosinicum sp. nov., isolated from root nodules of three different legumes. | Lin DX, Chen WF, Wang FQ, Hu D, Wang ET, Sui XH, Chen WX | Int J Syst Evol Microbiol | 10.1099/ijs.0.006387-0 | 2009 | Aerobiosis, Bacterial Proteins/genetics, Bacterial Typing Techniques, China, Cluster Analysis, DNA Fingerprinting/methods, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA, Ribosomal Spacer/chemistry/genetics, Fabaceae/*microbiology, Locomotion, Molecular Sequence Data, N-Acetylglucosaminyltransferases/genetics, Nucleic Acid Hybridization, Phylogeny, Plant Roots/*microbiology, Proteome/analysis, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Rhizobium/*classification/genetics/*isolation & purification/physiology, Sequence Analysis, DNA, Transcription Factors/genetics | Genetics |
Metabolism | 21600980 | Nodulation-gene-inducing flavonoids increase overall production of autoinducers and expression of N-acyl homoserine lactone synthesis genes in rhizobia. | Perez-Montano F, Guasch-Vidal B, Gonzalez-Barroso S, Lopez-Baena FJ, Cubo T, Ollero FJ, Gil-Serrano AM, Rodriguez-Carvajal MA, Bellogin RA, Espuny MR | Res Microbiol | 10.1016/j.resmic.2011.05.002 | 2011 | Acyl-Butyrolactones/*metabolism, Bacterial Proteins/*genetics/metabolism, Fabaceae/microbiology/physiology, Flavonoids/*metabolism, *Gene Expression Regulation, Bacterial, Molecular Sequence Data, Plant Root Nodulation, Rhizobium/genetics/*metabolism, Sinorhizobium fredii/genetics/*metabolism | Genetics |
Phylogeny | 24639241 | Rhizobium flavum sp. nov., a triazophos-degrading bacterium isolated from soil under the long-term application of triazophos. | Gu T, Sun LN, Zhang J, Sui XH, Li SP | Int J Syst Evol Microbiol | 10.1099/ijs.0.061523-0 | 2014 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fabaceae/microbiology, Fatty Acids/chemistry, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Organothiophosphates/*metabolism, *Phylogeny, Pigmentation, Plant Root Nodulation, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Soil Pollutants/metabolism, Triazoles/*metabolism, Ubiquinone/chemistry | Metabolism |
Phylogeny | 25721451 | Phenotypic and genetic characterization of rhizobia isolated from Hedysarum flexuosum in Northwest region of Morocco. | Ezzakkioui F, El Mourabit N, Chahboune R, Castellano-Hinojosa A, Bedmar EJ, Barrijal S | J Basic Microbiol | 10.1002/jobm.201400790 | 2015 | Bacteria/*classification/genetics/*isolation & purification, DNA, Bacterial, Fabaceae/*microbiology, Genes, rRNA, Genetic Variation, Morocco, *Phenotype, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/*genetics/isolation & purification, Root Nodules, Plant/*microbiology, Sequence Alignment, Symbiosis | Enzymology |
Genetics | 28798728 | Draft Genome Sequence of the Nitrogen-Fixing Rhizobium sullae Type Strain IS123(T) Focusing on the Key Genes for Symbiosis with its Host Hedysarum coronarium L. | Sablok G, Rosselli R, Seeman T, van Velzen R, Polone E, Giacomini A, La Porta N, Geurts R, Muresu R, Squartini A | Front Microbiol | 10.3389/fmicb.2017.01348 | 2017 | Pathogenicity |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
5416 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14623) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14623 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
82814 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID100906.1 | StrainInfo: A central database for resolving microbial strain identifiers |