Strain identifier

BacDive ID: 13628

Type strain: Yes

Species: Rhizobium sullae

Strain Designation: IS123, RHIS123

Strain history: <- A. Squartini; IS123 <- F. Temprano, Sevilla, Spain

NCBI tax ID(s): 50338 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 5416

BacDive-ID: 13628

DSM-Number: 14623

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Rhizobium sullae IS123 is a mesophilic bacterium that was isolated from root nodules of Hedysarum coronarium.

NCBI tax id

  • NCBI tax id: 50338
  • Matching level: species

strain history

  • @ref: 5416
  • history: <- A. Squartini; IS123 <- F. Temprano, Sevilla, Spain

doi: 10.13145/bacdive13628.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Rhizobiaceae
  • genus: Rhizobium
  • species: Rhizobium sullae
  • full scientific name: Rhizobium sullae Squartini et al. 2002

@ref: 5416

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Rhizobiaceae

genus: Rhizobium

species: Rhizobium sullae

full scientific name: Rhizobium sullae Squartini et al. 2002

strain designation: IS123, RHIS123

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 5416
  • name: RHIZOBIUM MEDIUM (DSMZ Medium 98)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/98
  • composition: Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water

culture temp

  • @ref: 5416
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 5416
  • sample type: root nodules of Hedysarum coronarium
  • host species: Hedysarum coronarium
  • geographic location: Cadiz
  • country: Spain
  • origin.country: ESP
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root nodule

Safety information

risk assessment

  • @ref: 5416
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Rhizobium sullae partial 16S rRNA gene, type strain IS 123T
  • accession: Y10170
  • length: 1370
  • database: ena
  • NCBI tax ID: 50338

Genome sequences

  • @ref: 66792
  • description: Rhizobium sullae DSM 14623
  • accession: 2738541313
  • assembly level: draft
  • database: img
  • NCBI tax ID: 50338

External links

@ref: 5416

culture collection no.: DSM 14623, USDA 4950

straininfo link

  • @ref: 82814
  • straininfo: 100906

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12148639Rhizobium sullae sp. nov. (formerly 'Rhizobium hedysari'), the root-nodule microsymbiont of Hedysarum coronarium L.Squartini A, Struffi P, Doring H, Selenska-Pobell S, Tola E, Giacomini A, Vendramin E, Velazquez E, Mateos PF, Martinez-Molina E, Dazzo FB, Casella S, Nuti MPInt J Syst Evol Microbiol10.1099/00207713-52-4-12672002Acyltransferases/genetics, Bacterial Proteins, DNA, Ribosomal, Electrophoresis/methods, Fabaceae/growth & development/*microbiology, Hydrogen-Ion Concentration, Microscopy, Electron, Molecular Sequence Data, *Nitrogen Fixation/genetics, Nucleic Acid Hybridization, Plant Roots/*microbiology, RNA, Ribosomal, 16S, Restriction Mapping, Rhizobium/*classification/genetics, Sequence Alignment, Soil/analysis, *Symbiosis, rRNA OperonGenetics
Phylogeny19567587Rhizobium mesosinicum sp. nov., isolated from root nodules of three different legumes.Lin DX, Chen WF, Wang FQ, Hu D, Wang ET, Sui XH, Chen WXInt J Syst Evol Microbiol10.1099/ijs.0.006387-02009Aerobiosis, Bacterial Proteins/genetics, Bacterial Typing Techniques, China, Cluster Analysis, DNA Fingerprinting/methods, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA, Ribosomal Spacer/chemistry/genetics, Fabaceae/*microbiology, Locomotion, Molecular Sequence Data, N-Acetylglucosaminyltransferases/genetics, Nucleic Acid Hybridization, Phylogeny, Plant Roots/*microbiology, Proteome/analysis, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Rhizobium/*classification/genetics/*isolation & purification/physiology, Sequence Analysis, DNA, Transcription Factors/geneticsGenetics
Metabolism21600980Nodulation-gene-inducing flavonoids increase overall production of autoinducers and expression of N-acyl homoserine lactone synthesis genes in rhizobia.Perez-Montano F, Guasch-Vidal B, Gonzalez-Barroso S, Lopez-Baena FJ, Cubo T, Ollero FJ, Gil-Serrano AM, Rodriguez-Carvajal MA, Bellogin RA, Espuny MRRes Microbiol10.1016/j.resmic.2011.05.0022011Acyl-Butyrolactones/*metabolism, Bacterial Proteins/*genetics/metabolism, Fabaceae/microbiology/physiology, Flavonoids/*metabolism, *Gene Expression Regulation, Bacterial, Molecular Sequence Data, Plant Root Nodulation, Rhizobium/genetics/*metabolism, Sinorhizobium fredii/genetics/*metabolismGenetics
Phylogeny24639241Rhizobium flavum sp. nov., a triazophos-degrading bacterium isolated from soil under the long-term application of triazophos.Gu T, Sun LN, Zhang J, Sui XH, Li SPInt J Syst Evol Microbiol10.1099/ijs.0.061523-02014Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fabaceae/microbiology, Fatty Acids/chemistry, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Organothiophosphates/*metabolism, *Phylogeny, Pigmentation, Plant Root Nodulation, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Soil Pollutants/metabolism, Triazoles/*metabolism, Ubiquinone/chemistryMetabolism
Phylogeny25721451Phenotypic and genetic characterization of rhizobia isolated from Hedysarum flexuosum in Northwest region of Morocco.Ezzakkioui F, El Mourabit N, Chahboune R, Castellano-Hinojosa A, Bedmar EJ, Barrijal SJ Basic Microbiol10.1002/jobm.2014007902015Bacteria/*classification/genetics/*isolation & purification, DNA, Bacterial, Fabaceae/*microbiology, Genes, rRNA, Genetic Variation, Morocco, *Phenotype, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/*genetics/isolation & purification, Root Nodules, Plant/*microbiology, Sequence Alignment, SymbiosisEnzymology
Genetics28798728Draft Genome Sequence of the Nitrogen-Fixing Rhizobium sullae Type Strain IS123(T) Focusing on the Key Genes for Symbiosis with its Host Hedysarum coronarium L.Sablok G, Rosselli R, Seeman T, van Velzen R, Polone E, Giacomini A, La Porta N, Geurts R, Muresu R, Squartini AFront Microbiol10.3389/fmicb.2017.013482017Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5416Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14623)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14623
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
82814Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100906.1StrainInfo: A central database for resolving microbial strain identifiers