Archive BacDiveID:10.13145/bacdive13625.20230509.8.1

Strain identifier

BacDive ID: 13625

Type strain:

Species: Rhizobium etli

Strain history: CIP <- 1996, J. Mora Celis, Centro de Investigacion Sobre Fijacion de Nitrogeno, Morelos, Mexico: strain CFN42

NCBI tax ID(s): 347834 (strain), 29449 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 4407

BacDive-ID: 13625

DSM-Number: 11541

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Rhizobium etli DSM 11541 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from beans, Phaseolus vulgaris.

NCBI tax id

NCBI tax id	Matching level
29449	species
347834	strain

strain history

@ref	history
4407	<- ATCC <- E. Martinez-Romero, CFN 42
41317	1996, J. Mora Celis, Centro de Investigacion Sobre Fijacion de Nitrogeno, Morelos, Mexico: strain CFN42
67770	IAM 15379 <-- NBRC 15573 <-- IFO 15573 <-- E. Martínez-Romero CFN 42.
119136	CIP <- 1996, J. Mora Celis, Centro de Investigacion Sobre Fijacion de Nitrogeno, Morelos, Mexico: strain CFN42

doi: 10.13145/bacdive13625.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Rhizobiaceae
genus: Rhizobium
species: Rhizobium etli
full scientific name: Rhizobium etli Segovia et al. 1993

@ref: 4407

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Rhizobiaceae

genus: Rhizobium

species: Rhizobium etli

full scientific name: Rhizobium etli Segovia et al. 1993

type strain: yes

Morphology

cell morphology

@ref: 119136
gram stain: negative
cell shape: rod-shaped
motility: no

colony morphology

@ref	incubation period
4407	1-2 days
119136

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
4407	RHIZOBIUM MEDIUM (DSMZ Medium 98)	yes	https://mediadive.dsmz.de/medium/98	Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water
41317	MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii	yes		Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)
119136	CIP Medium 1	yes	https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=1

culture temp

@ref	growth	type	temperature	range
4407	positive	growth	30	mesophilic
41317	positive	growth	30	mesophilic
67770	positive	growth	28	mesophilic
119136	positive	growth	22-37
119136	no	growth	10	psychrophilic
119136	no	growth	41	thermophilic
119136	no	growth	45	thermophilic

Physiology and metabolism

halophily

@ref	salt	growth	tested relation	concentration
119136	NaCl	no	growth	0 %
119136	NaCl	no	growth	2 %
119136	NaCl	no	growth	4 %
119136	NaCl	no	growth	6 %
119136	NaCl	no	growth	8 %
119136	NaCl	no	growth	10 %

metabolite utilization

@ref	metabolite	utilization activity	kind of utilization tested	Chebi-ID
68371	Potassium 5-ketogluconate	-	builds acid from
68371	Potassium 2-ketogluconate	-	builds acid from
68371	gluconate	-	builds acid from	24265
68371	L-arabitol	-	builds acid from	18403
68371	D-arabitol	-	builds acid from	18333
68371	L-fucose	-	builds acid from	18287
68371	D-fucose	-	builds acid from	28847
68371	D-tagatose	-	builds acid from	16443
68371	D-lyxose	-	builds acid from	62318
68371	turanose	-	builds acid from	32528
68371	gentiobiose	-	builds acid from	28066
68371	xylitol	-	builds acid from	17151
68371	glycogen	-	builds acid from	28087
68371	starch	-	builds acid from	28017
68371	raffinose	-	builds acid from	16634
68371	melezitose	-	builds acid from	6731
68371	inulin	-	builds acid from	15443
68371	trehalose	-	builds acid from	27082
68371	sucrose	-	builds acid from	17992
68371	melibiose	-	builds acid from	28053
68371	lactose	-	builds acid from	17716
68371	maltose	-	builds acid from	17306
68371	cellobiose	-	builds acid from	17057
68371	salicin	-	builds acid from	17814
68371	esculin	+	builds acid from	4853
68371	arbutin	-	builds acid from	18305
68371	amygdalin	-	builds acid from	27613
68371	N-acetylglucosamine	-	builds acid from	59640
68371	methyl alpha-D-glucopyranoside	-	builds acid from	320061
68371	methyl alpha-D-mannoside	-	builds acid from	43943
68371	D-sorbitol	-	builds acid from	17924
68371	D-mannitol	-	builds acid from	16899
68371	myo-inositol	-	builds acid from	17268
68371	galactitol	-	builds acid from	16813
68371	L-rhamnose	-	builds acid from	62345
68371	L-sorbose	-	builds acid from	17266
68371	D-mannose	-	builds acid from	16024
68371	D-fructose	-	builds acid from	15824
68371	D-glucose	-	builds acid from	17634
68371	D-galactose	-	builds acid from	12936
68371	methyl beta-D-xylopyranoside	-	builds acid from	74863
68371	ribitol	-	builds acid from	15963
68371	L-xylose	-	builds acid from	65328
68371	D-xylose	-	builds acid from	65327
68371	D-ribose	-	builds acid from	16988
68371	L-arabinose	-	builds acid from	30849
68371	D-arabinose	-	builds acid from	17108
68371	erythritol	-	builds acid from	17113
68371	glycerol	-	builds acid from	17754
119136	citrate	-	carbon source	16947
119136	esculin	+	hydrolysis	4853
119136	hippurate	-	hydrolysis	606565
119136	nitrate	-	reduction	17632
119136	nitrite	-	reduction	16301

antibiotic resistance

@ref: 119136
metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
is antibiotic: yes
is sensitive: yes
is resistant: no

metabolite production

@ref: 119136
Chebi-ID: 35581
metabolite: indole
production: no

metabolite tests

@ref	Chebi-ID	metabolite	voges-proskauer-test	methylred-test
119136	15688	acetoin	-
119136	17234	glucose		-

enzymes

@ref	value	activity	ec
119136	oxidase	-
119136	beta-galactosidase	+	3.2.1.23
119136	alcohol dehydrogenase	-	1.1.1.1
119136	gelatinase	-
119136	amylase	-
119136	DNase	-
119136	caseinase	-	3.4.21.50
119136	catalase	-	1.11.1.6
119136	tween esterase	-
119136	gamma-glutamyltransferase	-	2.3.2.2
119136	lecithinase	-
119136	lipase	-
119136	lysine decarboxylase	-	4.1.1.18
119136	ornithine decarboxylase	-	4.1.1.17
119136	phenylalanine ammonia-lyase	-	4.3.1.24
119136	protease	-
119136	tryptophan deaminase	-
119136	urease	+	3.5.1.5
68382	alkaline phosphatase	+	3.1.3.1
68382	esterase (C 4)	+
68382	esterase lipase (C 8)	-
68382	lipase (C 14)	-
68382	leucine arylamidase	+	3.4.11.1
68382	valine arylamidase	-
68382	cystine arylamidase	-	3.4.11.3
68382	trypsin	+	3.4.21.4
68382	alpha-chymotrypsin	-	3.4.21.1
68382	acid phosphatase	+	3.1.3.2
68382	naphthol-AS-BI-phosphohydrolase	-
68382	alpha-galactosidase	-	3.2.1.22
68382	beta-galactosidase	+	3.2.1.23
68382	beta-glucuronidase	-	3.2.1.31
68382	alpha-glucosidase	+	3.2.1.20
68382	beta-glucosidase	+	3.2.1.21
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52
68382	alpha-mannosidase	+	3.2.1.24
68382	alpha-fucosidase	-	3.2.1.51

API zym

@ref	Control	Alkaline phosphatase	Esterase	Esterase Lipase	Lipase	Leucine arylamidase	Valine arylamidase	Cystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119136	-	+	+	-	-	+	-	-	+	-	+	-	-	+	-	+	+	+	+	-

API 50CHac

@ref	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119136	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API biotype100

@ref	GLU	FRU	GAL	TRE	MNE	SBE	MEL	SAC	RAF	MTE	MAL	LAC	LTE	MbGa	MaGa	CEL	GEN	MbGu	ESC	RIB	ARA	XYL	PLE	RHA	FUC	MLZ	DARL	LARL	XLT	DUL	TAG	GLY	INO	MAN	MTL	TUR	SOR	ADO	HBG	LYX	ERY	MDG	3MDG	SAT	MUC	LTAT	DTAT	MTAT	DMLT	LMLT	CATE	TATE	TTE	CIT	GRT	GAT	2KG	5KG	TRY	NAG	GNT	PAC	PAT	pOBE	QAT	GTE	mOBE	BAT	PPAT	CMT	TGE	BET	PCE	ABT	HIN	LAT	CAP	CYT	HIS	SUC	FUM	GRE	GYT	AVT	ETN	TTN	GLN	ITA	3OBU	APT	GTT	PRO	DALA	LALA	SER	MNT	PROP	TYR	2KT
119136	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

isolation

@ref	sample type	host species	geographic location	country	origin.country	continent
4407	beans, Phaseolus vulgaris	Phaseolus vulgaris	Guanajuato	Mexico	MEX	North America
67770	Root nodule of Phaseolus vulgaris	Phaseolus vulgaris		Mexico	MEX	North America
119136	Guanajuato		Guanajuato	Mexico	MEX	North America

isolation source categories

Cat1: #Host
Cat2: #Plants
Cat3: #Herbaceous plants (Grass,Crops)

taxonmaps

@ref: 69479
File name: preview.99_77.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_62;97_65;98_70;99_77&stattab=map
Last taxonomy: Rhizobium
16S sequence: AB680905
Sequence Identity:
Total samples: 333
soil counts: 50
aquatic counts: 32
animal counts: 28
plant counts: 223

Safety information

risk assessment

@ref	biosafety level	biosafety level comment
4407	1	Risk group (German classification)
119136	1	Risk group (French classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
4407	Rhizobium etli CFN 42, complete genome	CP000133	4381608	ena	347834
67770	Rhizobium etli gene for 16S rRNA, partial sequence, strain: NBRC 15573	AB680905	1406	ena	29449

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Rhizobium etli CFN 42, DSM 11541	640427137	complete	img	347834
67770	Rhizobium etli CFN 42	GCA_000092045	complete	ncbi	347834

External links

@ref: 4407

culture collection no.: DSM 11541, ATCC 51251, CFN 42, JCM 21823, CIP 104814, HAMBI 1727, IAM 15379, IFO 15573, LMG 17827, NBRC 15573

straininfo link

@ref: 82811
straininfo: 10585

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Genetics	7860608	Discrete amplifiable regions (amplicons) in the symbiotic plasmid of Rhizobium etli CFN42.	Romero D, Martinez-Salazar J, Girard L, Brom S, Davilla G, Palacios R, Flores M, Rodriguez C	J Bacteriol	10.1128/jb.177.4.973-980.1995	1995	Crossing Over, Genetic, DNA Transposable Elements, Gene Amplification/genetics, Gene Dosage, Genes, Bacterial/genetics, Genome, Bacterial, Plasmids/genetics, Rec A Recombinases/genetics/metabolism, Repetitive Sequences, Nucleic Acid/genetics, Restriction Mapping, Rhizobium/genetics, Sequence Deletion, Symbiosis/genetics	Metabolism
Enzymology	8589413	The enhancement of ammonium assimilation in Rhizobium etli prevents nodulation of Phaseolus vulgaris.	Mendoza A, Leija A, Martinez-Romero E, Hernandez G, Mora J	Mol Plant Microbe Interact	10.1094/mpmi-8-0584	1995	Down-Regulation, Escherichia coli/enzymology/genetics, Fabaceae/microbiology, Genes, Bacterial, Glutamate Dehydrogenase/genetics, Phenotype, Plants, Medicinal, Plasmids/genetics, Quaternary Ammonium Compounds/metabolism, Rhizobium/genetics/metabolism, Symbiosis	Phenotype
Genetics	9274036	Sequence, localization and characteristics of the replicator region of the symbiotic plasmid of Rhizobium etli.	Ramirez-Romero MA, Bustos P, Girard L, Rodriguez O, Cevallos MA, Davila G	Microbiology (Reading)	10.1099/00221287-143-8-2825	1997	Cloning, Molecular, DNA Replication, Gene Dosage, Gene Transfer Techniques, Molecular Sequence Data, Plasmids/genetics, Restriction Mapping, Rhizobium/genetics, Sequence Analysis, DNA, Species Specificity, Symbiosis/genetics	Enzymology
Genetics	9304861	Characterization of two plasmid-borne lps beta loci of Rhizobium etli required for lipopolysaccharide synthesis and for optimal interaction with plants.	Garcia-de los Santos A, Brom S	Mol Plant Microbe Interact	10.1094/MPMI.1997.10.7.891	1997	Amino Acid Sequence, Base Sequence, DNA, Bacterial, Genes, Bacterial, Lipopolysaccharides/biosynthesis/metabolism, Molecular Sequence Data, Plants/genetics, Plasmids, Rhizobium/*genetics, Sequence Homology, Amino Acid	Metabolism
Genetics	10482500	Identification of a plasmid-borne locus in Rhizobium etli KIM5s involved in lipopolysaccharide O-chain biosynthesis and nodulation of Phaseolus vulgaris.	Vinuesa P, Reuhs BL, Breton C, Werner D	J Bacteriol	10.1128/JB.181.18.5606-5614.1999	1999	Base Sequence, Carbohydrate Sequence, Conjugation, Genetic, Fabaceae/microbiology/physiology, Genetic Complementation Test, Lipopolysaccharides/biosynthesis/chemistry, Molecular Sequence Data, Mutagenesis, Insertional, O Antigens/biosynthesis/chemistry, Oligosaccharides/biosynthesis/chemistry, Open Reading Frames, Plants, Medicinal, Plasmids, Promoter Regions, Genetic, Restriction Mapping, Rhizobium/genetics/*physiology, Trisaccharides/biosynthesis/chemistry
Genetics	10796024	Multiresistance genes of Rhizobium etli CFN42.	Gonzalez-Pasayo R, Martinez-Romero E	Mol Plant Microbe Interact	10.1094/MPMI.2000.13.5.572	2000	Amino Acid Sequence, Base Sequence, DNA, Bacterial, Drug Resistance, Microbial/genetics, Genes, Bacterial, Molecular Sequence Data, Open Reading Frames, Rhizobium/*genetics
Metabolism	10873525	In Rhizobium etli symbiotic plasmid transfer, nodulation competitivity and cellular growth require interaction among different replicons.	Brom S, Garcia-de los Santos A, Cervantes L, Palacios R, Romero D	Plasmid	10.1006/plas.2000.1469	2000	Carbon/metabolism, Cell Division, DNA, Bacterial, Plasmids, Replicon, Rhizobium/genetics, Symbiosis, Transformation, Bacterial
Metabolism	10878127	Role of GOGAT in carbon and nitrogen partitioning in Rhizobium etli.	Castillo A, Taboada H, Mendoza A, Valderrama B, Encarnacion S, Mora J	Microbiology (Reading)	10.1099/00221287-146-7-1627	2000	Amino Acid Sequence, Carbon/metabolism, Glutamate Synthase/genetics/metabolism, Glutamic Acid/metabolism, Molecular Sequence Data, Mutagenesis, Insertional, Nitrogen/metabolism, Quaternary Ammonium Compounds/metabolism, Rhizobium/enzymology/genetics/growth & development, Sequence Alignment, Succinic Acid/metabolism	Genetics
Metabolism	11106020	Differential regulation of fixN-reiterated genes in Rhizobium etli by a novel fixL-fixK cascade.	Girard L, Brom S, Davalos A, Lopez O, Soberon M, Romero D	Mol Plant Microbe Interact	10.1094/MPMI.2000.13.12.1283	2000	Artificial Gene Fusion, Bacterial Proteins/genetics/metabolism, Chromosome Mapping, Cloning, Molecular, Electron Transport Complex IV/genetics, Gene Expression Regulation, Bacterial, Genotype, Glucuronidase/genetics/metabolism, Hemeproteins/genetics/metabolism, Histidine Kinase, Membrane Proteins/genetics, Multigene Family, Mutagenesis, Nitrogenase/genetics/metabolism, Plasmids, Recombinant Proteins/metabolism, Rhizobium/*genetics/metabolism, Rhizobium leguminosarum/genetics, Symbiosis	Enzymology
Metabolism	11717256	Regulation of gene expression in response to oxygen in Rhizobium etli: role of FnrN in fixNOQP expression and in symbiotic nitrogen fixation.	Lopez O, Morera C, Miranda-Rios J, Girard L, Romero D, Soberon M	J Bacteriol	10.1128/JB.183.24.6999-7006.2001	2001	Amino Acid Sequence, Bacterial Proteins/biosynthesis/metabolism, Cytochrome c Group/biosynthesis, Gene Duplication, Gene Expression Regulation, Bacterial, Genes, Bacterial, Genes, Regulator, Hemeproteins/metabolism, Histidine Kinase, Membrane Proteins/biosynthesis, Models, Genetic, Molecular Sequence Data, Mutation, Nitrogen Fixation/genetics, Nitrogenase/genetics/metabolism, Operon, Oxygen/pharmacology, Phaseolus/microbiology, Rhizobium/drug effects/genetics, Sequence Homology, Amino Acid, Symbiosis/genetics, *Transcription Factors	Genetics
	11976134	Conservation of plasmid-encoded traits among bean-nodulating Rhizobium species.	Brom S, Girard L, Garcia-de los Santos A, Sanjuan-Pinilla JM, Olivares J, Sanjuan J	Appl Environ Microbiol	10.1128/AEM.68.5.2555-2561.2002	2002	Chromosomes, Bacterial, Conserved Sequence, Fabaceae/microbiology, Genetic Markers/physiology, Plasmids/genetics, Polymorphism, Restriction Fragment Length, Rhizobium/genetics
Phylogeny	12383728	Rhizobium etli CFN42 contains at least three plasmids of the repABC family: a structural and evolutionary analysis.	Cevallos MA, Porta H, Izquierdo J, Tun-Garrido C, Garcia-de-los-Santos A, Davila G, Brom S	Plasmid	10.1016/s0147-619x(02)00119-1	2002	Base Sequence, Conjugation, Genetic, DNA, Bacterial/genetics, Evolution, Molecular, Genes, Bacterial/genetics, Molecular Sequence Data, Phylogeny, Plasmids/classification/genetics, Replication Origin/genetics, Rhizobium/*genetics	Genetics
Enzymology	12580283	BacS: an abundant bacteroid protein in Rhizobium etli whose expression ex planta requires nifA.	Jahn OJ, Davila G, Romero D, Noel KD	Mol Plant Microbe Interact	10.1094/MPMI.2003.16.1.65	2003	Aerobiosis, Amino Acid Sequence, Bacterial Proteins/genetics/metabolism, Base Sequence, Cloning, Molecular, DNA, Bacterial/chemistry/genetics, Electrophoresis, Polyacrylamide Gel, Gene Expression Regulation, Bacterial/drug effects, Genetic Complementation Test, Molecular Sequence Data, Open Reading Frames/genetics, Oxygen/pharmacology, Phenotype, Rhizobium/genetics/metabolism, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Symbiosis/genetics, Transcription Factors/genetics/metabolism	Metabolism
Metabolism	12591886	Conjugative transfer of p42a from rhizobium etli CFN42, which is required for mobilization of the symbiotic plasmid, is regulated by quorum sensing.	Tun-Garrido C, Bustos P, Gonzalez V, Brom S	J Bacteriol	10.1128/JB.185.5.1681-1692.2003	2003	4-Butyrolactone/analogs & derivatives/metabolism, Amino Acid Sequence, Bacterial Proteins/genetics, Conjugation, Genetic, DNA Helicases/genetics/metabolism, Escherichia coli Proteins, Gene Expression Regulation, Bacterial, Molecular Sequence Data, Mutagenesis, Open Reading Frames, Plasmids/genetics, Repressor Proteins/genetics, Rhizobium/genetics/physiology, Sequence Analysis, Sequence Homology, Amino Acid, Symbiosis/genetics, Trans-Activators/genetics, Transcription Factors/genetics	Genetics
Genetics	12801410	The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments.	Gonzalez V, Bustos P, Ramirez-Romero MA, Medrano-Soto A, Salgado H, Hernandez-Gonzalez I, Hernandez-Celis JC, Quintero V, Moreno-Hagelsieb G, Girard L, Rodriguez O, Flores M, Cevallos MA, Collado-Vides J, Romero D, Davila G	Genome Biol	10.1186/gb-2003-4-6-r36	2003	Anaerobiosis/physiology, Bacterial Proteins/physiology, Biological Transport, Active/genetics, Conserved Sequence/genetics, DNA Transposable Elements/genetics, DNA-Binding Proteins, DNA-Directed RNA Polymerases/physiology, Energy Transfer/genetics, Flavoproteins/physiology, Gene Order/genetics, Gene Rearrangement/genetics, Genes, Bacterial/genetics/physiology, Genome, Bacterial, Macromolecular Substances, Mosaicism/genetics, Nitrogen Fixation/genetics, Plasmids/genetics, RNA Polymerase Sigma 54, Rhizobium/genetics, Sequence Analysis, DNA/methods, Sigma Factor/physiology, Symbiosis/*genetics, Synteny/genetics	Transcriptome
Metabolism	15184121	Engineering the nifH promoter region and abolishing poly-beta-hydroxybutyrate accumulation in Rhizobium etli enhance nitrogen fixation in symbiosis with Phaseolus vulgaris.	Peralta H, Mora Y, Salazar E, Encarnacion S, Palacios R, Mora J	Appl Environ Microbiol	10.1128/AEM.70.6.3272-3281.2004	2004	Gene Expression Regulation, Bacterial, Genetic Engineering/methods, Hydroxybutyrates/metabolism, Nitrogen Fixation, Operon, Oxidoreductases/genetics/metabolism, Phaseolus/microbiology, Polyesters/metabolism, Promoter Regions, Genetic, Recombinant Fusion Proteins, Rhizobium/enzymology/genetics, Symbiosis, Transcription, Genetic	Enzymology
Genetics	15317780	Identification of functional mob regions in Rhizobium etli: evidence for self-transmissibility of the symbiotic plasmid pRetCFN42d.	Perez-Mendoza D, Dominguez-Ferreras A, Munoz S, Soto MJ, Olivares J, Brom S, Girard L, Herrera-Cervera JA, Sanjuan J	J Bacteriol	10.1128/JB.186.17.5753-5761.2004	2004	Bacterial Proteins/genetics/physiology, Conjugation, Genetic, Cosmids/genetics, Gene Transfer, Horizontal, Genes, Bacterial, Genome, Bacterial, Multigene Family, Plasmids, Replicon, Rhizobium etli/genetics/*physiology, Symbiosis
Metabolism	15516565	Transfer of the symbiotic plasmid of Rhizobium etli CFN42 requires cointegration with p42a, which may be mediated by site-specific recombination.	Brom S, Girard L, Tun-Garrido C, Garcia-de los Santos A, Bustos P, Gonzalez V, Romero D	J Bacteriol	10.1128/JB.186.22.7538-7548.2004	2004	Amino Acid Sequence, Attachment Sites, Microbiological, Base Sequence, Conjugation, Genetic, Gene Expression Regulation, Bacterial, Gene Transfer, Horizontal, Integrases/genetics/metabolism, Molecular Sequence Data, Phaseolus/microbiology, Plasmids/genetics, Recombination, Genetic, Rhizobium etli/genetics/growth & development/metabolism, Sequence Analysis, DNA, Symbiosis	Genetics
Metabolism	15667294	Function of the Rhizobium etli CFN42 nirK gene in nitrite metabolism.	Bueno E, Gomez-Hernandez N, Girard L, Bedmar EJ, Delgado MJ	Biochem Soc Trans	10.1042/BST0330162	2005	Genes, Bacterial, Nitrate Reductase, Nitrate Reductases/genetics/metabolism, Nitrites/metabolism, Rhizobium etli/*genetics	Enzymology
Genetics	16237002	Diversification of DNA sequences in the symbiotic genome of Rhizobium etli.	Flores M, Morales L, Avila A, Gonzalez V, Bustos P, Garcia D, Mora Y, Guo X, Collado-Vides J, Pinero D, Davila G, Mora J, Palacios R	J Bacteriol	10.1128/JB.187.21.7185-7192.2005	2005	DNA, Bacterial/chemistry/genetics, Gene Transfer, Horizontal, Genome, Bacterial, Molecular Sequence Data, Nitrogen Fixation, Plasmids/genetics, Polymorphism, Single Nucleotide, Recombination, Genetic, Rhizobium etli/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Symbiosis/genetics	Transcriptome
Metabolism	16952958	Thiamine is synthesized by a salvage pathway in Rhizobium leguminosarum bv. viciae strain 3841.	Karunakaran R, Ebert K, Harvey S, Leonard ME, Ramachandran V, Poole PS	J Bacteriol	10.1128/JB.00641-06	2006	Alkyl and Aryl Transferases/physiology, Artificial Gene Fusion, Binding Sites, Colony Count, Microbial, Gene Deletion, Gene Expression Regulation, Bacterial, Genes, Bacterial, Green Fluorescent Proteins/biosynthesis/genetics, Microscopy, Fluorescence, Nitrogen Fixation, Peas/microbiology, Phosphotransferases (Alcohol Group Acceptor)/metabolism, Phosphotransferases (Phosphate Group Acceptor)/metabolism, Plant Roots/microbiology, Promoter Regions, Genetic, Pyrimidines/metabolism, RNA, Bacterial/analysis, RNA, Messenger/analysis, Reverse Transcriptase Polymerase Chain Reaction, Rhizobium leguminosarum/genetics/growth & development/metabolism, Thiamine/*biosynthesis, Thiazoles/metabolism, Vicia/microbiology
Metabolism	17447892	Rhizavidin from Rhizobium etli: the first natural dimer in the avidin protein family.	Helppolainen SH, Nurminen KP, Maatta JA, Halling KK, Slotte JP, Huhtala T, Liimatainen T, Yla-Herttuala S, Airenne KJ, Narvanen A, Janis J, Vainiotalo P, Valjakka J, Kulomaa MS, Nordlund HR	Biochem J	10.1042/BJ20070076	2007	Amino Acid Sequence, Avidin/chemistry/genetics/metabolism, Bacterial Proteins/chemistry/genetics/metabolism, Escherichia coli/genetics/metabolism, Gene Expression Regulation, Bacterial, Models, Molecular, Molecular Sequence Data, Protein Conformation, Rhizobium/metabolism	Genetics
Metabolism	17693711	Tyrosinase from Rhizobium etli is involved in nodulation efficiency and symbiosis-associated stress resistance.	Pinero S, Rivera J, Romero D, Cevallos MA, Martinez A, Bolivar F, Gosset G	J Mol Microbiol Biotechnol	10.1159/000103595	2007	Bacterial Proteins/genetics/metabolism, Drug Resistance, Bacterial, Gallic Acid/analogs & derivatives/pharmacology, Gene Expression Regulation, Bacterial/drug effects, Hydrogen Peroxide/pharmacology, Hydroxybenzoates/pharmacology, Melanins/metabolism, Monophenol Monooxygenase/genetics/metabolism, Nitrogen Fixation, Plasmids/genetics, Rhizobium etli/drug effects/enzymology/genetics, Streptomycin/pharmacology, Symbiosis	Pathogenicity
Metabolism	17918626	Novel reiterated Fnr-type proteins control the production of the symbiotic terminal oxidase cbb3 in Rhizobium etli CFN42.	Granados-Baeza MJ, Gomez-Hernandez N, Mora Y, Delgado MJ, Romero D, Girard L	Mol Plant Microbe Interact	10.1094/MPMI-20-10-1241	2007	Bacterial Proteins/genetics/metabolism, Electron Transport Complex IV/biosynthesis/genetics, Gene Expression Regulation, Plant, Mutation, Nitrogen Fixation/genetics, Operon, Rhizobium etli/enzymology/genetics/metabolism, Symbiosis/genetics/physiology, Transcription Factors/genetics/metabolism	Biotechnology
Genetics	17922569	Metabolic reconstruction and modeling of nitrogen fixation in Rhizobium etli.	Resendis-Antonio O, Reed JL, Encarnacion S, Collado-Vides J, Palsson BO	PLoS Comput Biol	10.1371/journal.pcbi.0030192	2007	Gene Expression Regulation, Bacterial/physiology, Genome, Bacterial/physiology, Metabolic Networks and Pathways, Models, Biological, Nitrogen Fixation/genetics, Rhizobium etli/genetics/*metabolism, Symbiosis	Metabolism
Phylogeny	17985116	Phylogenetic diversity based on rrs, atpD, recA genes and 16S-23S intergenic sequence analyses of rhizobial strains isolated from Vicia faba and Pisum sativum in Peru.	Santillana N, Ramirez-Bahena MH, Garcia-Fraile P, Velazquez E, Zuniga D	Arch Microbiol	10.1007/s00203-007-0313-y	2007	Bacterial Proteins/genetics, Biodiversity, Cluster Analysis, DNA Fingerprinting, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA, Ribosomal Spacer/chemistry/genetics, Molecular Sequence Data, Peas/microbiology, Peru, Phylogeny, Plant Roots/microbiology, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Random Amplified Polymorphic DNA Technique, Rhizobium/classification/genetics/isolation & purification, Sequence Analysis, DNA, Sequence Homology, Vicia faba/microbiology	Genetics
Metabolism	18310436	Requirement of a plasmid-encoded catalase for survival of Rhizobium etli CFN42 in a polyphenol-rich environment.	Garcia-de Los Santos A, Lopez E, Cubillas CA, Noel KD, Brom S, Romero D	Appl Environ Microbiol	10.1128/AEM.02457-07	2008	Bacterial Proteins/genetics/physiology, Catalase/genetics/physiology, Colony Count, Microbial, Fabaceae/microbiology, Flavonoids/metabolism/toxicity, Genetic Complementation Test, Microbial Viability, Phenols/metabolism/toxicity, Plant Extracts/toxicity, Plasmids, Polyphenols, Rhizobium etli/enzymology/genetics/physiology	Enzymology
Metabolism	18336549	Isolation and characterization of an operon involved in sulfate and sulfite metabolism in Sinorhizobium fredii.	Lu ZJ, Cao YQ, Long WJ, Long ZD, Chen G, Ma QS, Wu B	FEMS Microbiol Lett	10.1111/j.1574-6968.2008.01102.x	2008	Amino Acid Sequence, Bacterial Proteins/chemistry/genetics/metabolism, Base Sequence, Cloning, Molecular, Genes, Reporter, Molecular Sequence Data, Open Reading Frames, Operon, Oxidoreductases Acting on Sulfur Group Donors/chemistry/genetics/metabolism, Promoter Regions, Genetic, Sequence Analysis, DNA, Sequence Deletion, Sinorhizobium fredii/genetics/growth & development/metabolism, Sulfates/metabolism, Sulfites/metabolism, Transcription, Genetic	Enzymology
Genetics	18596979	A common genomic framework for a diverse assembly of plasmids in the symbiotic nitrogen fixing bacteria.	Crossman LC, Castillo-Ramirez S, McAnnula C, Lozano L, Vernikos GS, Acosta JL, Ghazoui ZF, Hernandez-Gonzalez I, Meakin G, Walker AW, Hynes MF, Young JP, Downie JA, Romero D, Johnston AW, Davila G, Parkhill J, Gonzalez V	PLoS One	10.1371/journal.pone.0002567	2008	Evolution, Molecular, Genome, Bacterial, Models, Genetic, Nitrogen Fixation/genetics, Phylogeny, Plasmids/genetics/metabolism, Rhizobium etli/genetics, Rhizobium leguminosarum/genetics, Symbiosis/genetics, Synteny	Phylogeny
Phylogeny	18726533	Genetic diversity of root-nodulating bacteria isolated from pea (Pisum sativum) in subtropical regions of China.	Yang C, Yang J, Li Y, Zhou J	Sci China C Life Sci	10.1007/s11427-008-0104-y	2008	China, Molecular Sequence Data, Peas/anatomy & histology/microbiology, Phylogeny, Plant Roots/microbiology, Polymorphism, Restriction Fragment Length, RNA, Bacterial/classification/genetics, RNA, Ribosomal, 16S/classification/genetics, Rhizobium/*genetics	Genetics
Phylogeny	18768622	Rhizobium oryzae sp. nov., isolated from the wild rice Oryza alta.	Peng G, Yuan Q, Li H, Zhang W, Tan Z	Int J Syst Evol Microbiol	10.1099/ijs.0.65632-0	2008	Bacterial Proteins/analysis, Bacterial Typing Techniques, DNA Fingerprinting, DNA Transposable Elements, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Drug Resistance, Bacterial, Electrophoresis, Polyacrylamide Gel, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Oryza/microbiology, Phylogeny, Plant Roots/microbiology, Polymerase Chain Reaction/methods, Proteome/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhizobium/classification/genetics/*isolation & purification/physiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Soybeans/microbiology	Enzymology
Phylogeny	19060074	Rhizobium fabae sp. nov., a bacterium that nodulates Vicia faba.	Tian CF, Wang ET, Wu LJ, Han TX, Chen WF, Gu CT, Gu JG, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000703-0	2008	Fatty Acids/analysis, Genes, Bacterial/genetics, Molecular Sequence Data, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Rhizobium/chemistry/classification/genetics/physiology, Species Specificity, Vicia faba/*microbiology	Genetics
Phylogeny	19567587	Rhizobium mesosinicum sp. nov., isolated from root nodules of three different legumes.	Lin DX, Chen WF, Wang FQ, Hu D, Wang ET, Sui XH, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.006387-0	2009	Aerobiosis, Bacterial Proteins/genetics, Bacterial Typing Techniques, China, Cluster Analysis, DNA Fingerprinting/methods, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA, Ribosomal Spacer/chemistry/genetics, Fabaceae/microbiology, Locomotion, Molecular Sequence Data, N-Acetylglucosaminyltransferases/genetics, Nucleic Acid Hybridization, Phylogeny, Plant Roots/microbiology, Proteome/analysis, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Rhizobium/classification/genetics/isolation & purification/physiology, Sequence Analysis, DNA, Transcription Factors/genetics	Genetics
Phylogeny	19643889	Rhizobium tibeticum sp. nov., a symbiotic bacterium isolated from Trigonella archiducis-nicolai (Sirj.) Vassilcz.	Hou BC, Wang ET, Li Y Jr, Jia RZ, Chen WF, Gao Y, Dong RJ, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.009647-0	2009	DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizobium/classification/genetics/isolation & purification/physiology, Root Nodules, Plant/microbiology/physiology, Symbiosis, Tibet, Trigonella/microbiology/physiology	Genetics
Genetics	20048063	Conserved symbiotic plasmid DNA sequences in the multireplicon pangenomic structure of Rhizobium etli.	Gonzalez V, Acosta JL, Santamaria RI, Bustos P, Fernandez JL, Hernandez Gonzalez IL, Diaz R, Flores M, Palacios R, Mora J, Davila G	Appl Environ Microbiol	10.1128/AEM.02039-09	2010	Cluster Analysis, Conserved Sequence, DNA, Bacterial/chemistry/genetics, Genome, Bacterial, Genomic Islands, Molecular Sequence Data, Phylogeny, Plasmids, Rhizobium etli/genetics/physiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid	Phylogeny
Enzymology	20177886	Cloning and characterization of a thermostable xylitol dehydrogenase from Rhizobium etli CFN42.	Tiwari MK, Moon HJ, Jeya M, Lee JK	Appl Microbiol Biotechnol	10.1007/s00253-010-2478-6	2010	Amino Acid Sequence, Bacterial Proteins/chemistry/genetics/metabolism, Cloning, Molecular, D-Xylulose Reductase/chemistry/genetics/metabolism, Enzyme Stability, Hot Temperature, Kinetics, Molecular Sequence Data, Molecular Weight, Rhizobium etli/chemistry/enzymology/genetics, Sequence Homology, Amino Acid, Substrate Specificity	Metabolism
Metabolism	20453139	Characterization of the NifA-RpoN regulon in Rhizobium etli in free life and in symbiosis with Phaseolus vulgaris.	Salazar E, Diaz-Mejia JJ, Moreno-Hagelsieb G, Martinez-Batallar G, Mora Y, Mora J, Encarnacion S	Appl Environ Microbiol	10.1128/AEM.02007-09	2010	Bacterial Proteins/genetics/metabolism, Computational Biology, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Molecular Sequence Data, Mutation, Nitrogen Fixation/genetics, Oligonucleotide Array Sequence Analysis, Phaseolus/microbiology, Proteomics, RNA Polymerase Sigma 54/genetics/metabolism, Regulon, Rhizobium etli/genetics/growth & development/metabolism/physiology, Symbiosis, Transcription Factors/genetics/metabolism	Genetics
Genetics	20675442	Evolutionary dynamics of insertion sequences in relation to the evolutionary histories of the chromosome and symbiotic plasmid genes of Rhizobium etli populations.	Lozano L, Hernandez-Gonzalez I, Bustos P, Santamaria RI, Souza V, Young JP, Davila G, Gonzalez V	Appl Environ Microbiol	10.1128/AEM.01001-10	2010	Bacterial Proteins/genetics, Chromosomes, Bacterial, Cluster Analysis, DNA Transposable Elements, DNA, Bacterial/chemistry/genetics, Evolution, Molecular, Mexico, Molecular Sequence Data, Phylogeny, Plasmids, Polymerase Chain Reaction, Polymorphism, Genetic, Rhizobium etli/genetics, Sequence Analysis, DNA, Sequence Homology	Phylogeny
Metabolism	21043576	Regulation and symbiotic role of nirK and norC expression in Rhizobium etli.	Gomez-Hernandez N, Reyes-Gonzalez A, Sanchez C, Mora Y, Delgado MJ, Girard L	Mol Plant Microbe Interact	10.1094/MPMI-07-10-0173	2011	Bacterial Proteins/genetics/metabolism, Gene Expression Regulation, Bacterial/physiology, Nitric Oxide/metabolism, Oxygen, Phaseolus/microbiology, Rhizobium etli/genetics/metabolism, Signal Transduction, Symbiosis/*physiology
Genetics	21217003	Plasmids with a chromosome-like role in rhizobia.	Landeta C, Davalos A, Cevallos MA, Geiger O, Brom S, Romero D	J Bacteriol	10.1128/JB.01184-10	2011	Chromosomes, Bacterial, Computational Biology, Culture Media/chemistry, Gene Deletion, Genes, Bacterial, Genes, Essential, Genome, Bacterial, Genomic Instability, Microbial Viability, Mutagenesis, Insertional, Plasmids, Replicon, Rhizobium etli/genetics/*growth & development	Cultivation
Enzymology	21246353	Covalent immobilization of recombinant Rhizobium etli CFN42 xylitol dehydrogenase onto modified silica nanoparticles.	Zhang YW, Tiwari MK, Jeya M, Lee JK	Appl Microbiol Biotechnol	10.1007/s00253-011-3094-9	2011	Biotransformation, Catalysis, D-Xylulose Reductase/chemistry/metabolism, Enzymes, Immobilized, Escherichia coli/metabolism, Nanoparticles/chemistry, Rhizobium etli/enzymology, Silicon Dioxide/chemistry, Xylulose/biosynthesis/metabolism	Metabolism
Phylogeny	21463532	Housekeeping genes essential for pantothenate biosynthesis are plasmid-encoded in Rhizobium etli and Rhizobium leguminosarum.	Villasenor T, Brom S, Davalos A, Lozano L, Romero D, Los Santos AG	BMC Microbiol	10.1186/1471-2180-11-66	2011	Biosynthetic Pathways/genetics, Cluster Analysis, Evolution, Molecular, Gene Deletion, Genes, Bacterial, Multigene Family, Pantothenic Acid/biosynthesis, Phylogeny, Plasmids, Rhizobium etli/genetics/metabolism, Rhizobium leguminosarum/genetics/metabolism, Sequence Homology	Metabolism
Genetics	21620885	repABC-based replication systems of Rhizobium leguminosarum bv. trifolii TA1 plasmids: incompatibility and evolutionary analyses.	Mazur A, Majewska B, Stasiak G, Wielbo J, Skorupska A	Plasmid	10.1016/j.plasmid.2011.04.002	2011	Bacterial Proteins/genetics/metabolism, Base Sequence, Biological Evolution, DNA Replication, Gene Transfer, Horizontal, Genes, Bacterial, Molecular Sequence Data, Phylogeny, Plasmids, Replicon, Rhizobium leguminosarum/*genetics, Sequence Analysis, DNA, Symbiosis/genetics, Trifolium/microbiology	Phylogeny
Genetics	21702991	The conjugative plasmid of a bean-nodulating Sinorhizobium fredii strain is assembled from sequences of two Rhizobium plasmids and the chromosome of a Sinorhizobium strain.	Cervantes L, Bustos P, Girard L, Santamaria RI, Davila G, Vinuesa P, Romero D, Brom S	BMC Microbiol	10.1186/1471-2180-11-149	2011	Conjugation, Genetic, DNA, Bacterial/chemistry/genetics, Evolution, Molecular, Fabaceae/microbiology, Gene Transfer, Horizontal, Molecular Sequence Data, Open Reading Frames, Plasmids, Recombination, Genetic, Sequence Analysis, DNA, Sinorhizobium fredii/*genetics/isolation & purification, Spain	Transcriptome
Phylogeny	21823087	Phylogenetic analysis reveals gene conversions in multigene families of rhizobia.	Hernandez-Salmeron JE, Santoyo G	Genet Mol Res	10.4238/vol10-3gmr1118	2011	Bacterial Proteins/classification/genetics, Bradyrhizobium/genetics, Gene Conversion/genetics, Multigene Family/genetics, Phylogeny, Rhizobium/genetics, Sinorhizobium meliloti/genetics
Phylogeny	22199210	Microvirga lupini sp. nov., Microvirga lotononidis sp. nov. and Microvirga zambiensis sp. nov. are alphaproteobacterial root-nodule bacteria that specifically nodulate and fix nitrogen with geographically and taxonomically separate legume hosts.	Ardley JK, Parker MA, De Meyer SE, Trengove RD, O'Hara GW, Reeve WG, Yates RJ, Dilworth MJ, Willems A, Howieson JG	Int J Syst Evol Microbiol	10.1099/ijs.0.035097-0	2011	Bacterial Typing Techniques, DNA, Bacterial/genetics, Fabaceae/microbiology, Fatty Acids/analysis, Methylobacteriaceae/classification/genetics/isolation & purification, Molecular Sequence Data, Nitrogen Fixation, *Phylogeny, Plant Root Nodulation, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Texas, Zambia	Genetics
	22419837	An approach to delineate primers for a group of poorly conserved sequences incorporating the common motif region.	Sahu M, Sahu J, Sahoo S, Dehury B, Sarma K, Sarmah R, Sen P, Modi MK, Barooah M	Bioinformation	10.6026/97320630008181	2012
Metabolism	22809273	FxkR provides the missing link in the fixL-fixK signal transduction cascade in Rhizobium etli CFN42.	Zamorano-Sanchez D, Reyes-Gonzalez A, Gomez-Hernandez N, Rivera P, Georgellis D, Girard L	Mol Plant Microbe Interact	10.1094/MPMI-05-12-0136-R	2012	Bacterial Proteins/chemistry/genetics/metabolism, Binding Sites, Electrophoretic Mobility Shift Assay, Gene Expression Regulation, Bacterial/genetics/physiology, Mutagenesis, Site-Directed, Rhizobium etli/genetics/metabolism, Signal Transduction/genetics/physiology
Phylogeny	22858268	Rhizobium etli taxonomy revised with novel genomic data and analyses.	Lopez-Guerrero MG, Ormeno-Orrillo E, Velazquez E, Rogel MA, Acosta JL, Gonzalez V, Martinez J, Martinez-Romero E	Syst Appl Microbiol	10.1016/j.syapm.2012.06.009	2012	DNA, Bacterial/genetics, Databases, Genetic, Genome, Bacterial, Genomics/methods, Nucleic Acid Hybridization, Phaseolus/microbiology, Phylogeny, Rhizobium etli/classification/*genetics	Genetics
Metabolism	23935046	Characterization of IntA, a bidirectional site-specific recombinase required for conjugative transfer of the symbiotic plasmid of Rhizobium etli CFN42.	Hernandez-Tamayo R, Sohlenkamp C, Puente JL, Brom S, Romero D	J Bacteriol	10.1128/JB.00714-13	2013	Gene Expression Regulation, Bacterial/physiology, Gene Expression Regulation, Enzymologic/physiology, Inverted Repeat Sequences, Plasmids/physiology, Protein Binding, Recombinases/genetics/metabolism, Rhizobium etli/enzymology, Symbiosis/physiology	Enzymology
Metabolism	24016735	RepA and RepB exert plasmid incompatibility repressing the transcription of the repABC operon.	Perez-Oseguera A, Cevallos MA	Plasmid	10.1016/j.plasmid.2013.08.001	2013	Adenosine Diphosphate/metabolism, Adenosine Triphosphatases/genetics/metabolism, Adenosine Triphosphate/metabolism, Amino Acid Sequence, Bacterial Proteins/genetics/metabolism, Gene Expression Regulation, Bacterial, Genome, Bacterial, Molecular Sequence Data, Mutation, Operon, Plasmids, Rhizobium etli/*genetics/metabolism, Sequence Alignment, Sequence Homology, Amino Acid, Transcription, Genetic	Genetics
Phylogeny	24054695	Near-full length sequencing of 16S rDNA and RFLP indicates that Rhizobium etli is the dominant species nodulating Egyptian winter Berseem clover (Trifolium alexandrinum L.).	Shamseldin A, Moawad H, Abd El-Rahim WM, Sadowsky MJ	Syst Appl Microbiol	10.1016/j.syapm.2013.08.002	2013	Bacterial Proteins, Biota, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Egypt, Molecular Sequence Data, N-Acetylglucosaminyltransferases, Oxidoreductases/genetics, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Rhizobium etli/classification/isolation & purification, Rhizobium leguminosarum/classification/isolation & purification, Sequence Analysis, DNA, Trifolium/microbiology	Enzymology
Metabolism	24077251	Phylogenomic analysis of Cation Diffusion Facilitator proteins uncovers Ni2+/Co2+ transporters.	Cubillas C, Vinuesa P, Tabche ML, Garcia-de los Santos A	Metallomics	10.1039/c3mt00204g	2013	Animals, Archaea/genetics/metabolism, Archaeal Proteins/genetics/metabolism, Bacteria/genetics/metabolism, Bacterial Proteins/genetics/metabolism, Cation Transport Proteins/genetics/metabolism, Cobalt/metabolism, Escherichia coli/genetics/metabolism, Nickel/metabolism, Phylogeny, Rhizobium etli/genetics/metabolism, Substrate Specificity	Phylogeny
Phylogeny	24646299	Rhizobial plasmid pLPU83a is able to switch between different transfer machineries depending on its genomic background.	Torres Tejerizo G, Pistorio M, Althabegoiti MJ, Cervantes L, Wibberg D, Schluter A, Puhler A, Lagares A, Romero D, Brom S	FEMS Microbiol Ecol	10.1111/1574-6941.12325	2014	Bacterial Proteins/genetics, Conjugation, Genetic, Gene Transfer, Horizontal, Genome, Bacterial, Phylogeny, Plasmids/classification/genetics, Rhizobium/genetics, Sinorhizobium/genetics, Transcription Factors/genetics	Genetics
Phylogeny	25005495	Genomic basis of symbiovar mimosae in Rhizobium etli.	Rogel MA, Bustos P, Santamaria RI, Gonzalez V, Romero D, Cevallos MA, Lozano L, Castro-Mondragon J, Martinez-Romero J, Ormeno-Orrillo E, Martinez-Romero E	BMC Genomics	10.1186/1471-2164-15-575	2014	DNA, Bacterial/chemistry/metabolism, Genome, Bacterial, Mimosa/genetics, Nitrogen Fixation/genetics, Phylogeny, Plasmids/genetics/metabolism, Rhizobium etli/classification/genetics, Sequence Alignment, Sequence Analysis, DNA, Symbiosis/genetics	Metabolism
Metabolism	25370750	A quinol oxidase, encoded by cyoABCD, is utilized to adapt to lower O2 concentrations in Rhizobium etli CFN42.	Lunak ZR, Noel KD	Microbiology (Reading)	10.1099/mic.0.083386-0	2014	Adaptation, Biological, Enzyme Activation, Gene Expression Regulation, Bacterial, Hypoxia/metabolism, Mutation, Oxidoreductases/genetics/metabolism, Oxygen Consumption, Rhizobium etli/genetics/growth & development/metabolism, Symbiosis/genetics	Enzymology
	25642223	Genes encoding conserved hypothetical proteins localized in the conjugative transfer region of plasmid pRet42a from Rhizobium etli CFN42 participate in modulating transfer and affect conjugation from different donors.	Lopez-Fuentes E, Torres-Tejerizo G, Cervantes L, Brom S	Front Microbiol	10.3389/fmicb.2014.00793	2015
Metabolism	25691531	The quorum sensing regulator CinR hierarchically regulates two other quorum sensing pathways in ligand-dependent and -independent fashions in Rhizobium etli.	Zheng H, Mao Y, Zhu Q, Ling J, Zhang N, Naseer N, Zhong Z, Zhu J	J Bacteriol	10.1128/JB.00003-15	2015	Acyl-Butyrolactones/metabolism, DNA, Bacterial/metabolism, Gene Expression Regulation, Bacterial, Protein Binding, Quorum Sensing, Rhizobium etli/genetics/physiology, Transcription Factors/metabolism
Metabolism	26297648	Quinol oxidase encoded by cyoABCD in Rhizobium etli CFN42 is regulated by ActSR and is crucial for growth at low pH or low iron conditions.	Lunak ZR, Dale Noel K	Microbiology (Reading)	10.1099/mic.0.000130	2015	Bacterial Proteins/genetics/metabolism, Base Sequence, Binding Sites, Gene Expression Regulation, Bacterial, Hydrogen-Ion Concentration, Iron/metabolism, Molecular Sequence Data, Mutation, Oxidoreductases/genetics, Oxygen Consumption, Promoter Regions, Genetic, Protein Binding, Rhizobium etli/genetics/metabolism	Genetics
Metabolism	26413054	Symbiotic potential and survival of native rhizobia kept on different carriers.	Ruiz-Valdiviezo VM, Canseco LM, Suarez LA, Gutierrez-Miceli FA, Dendooven L, Rincon-Rosales R	Braz J Microbiol	10.1590/S1517-838246320140541	2015	Aluminum Oxide/chemistry, Carboxymethylcellulose Sodium/chemistry, Cellulose/chemistry, Fertilizers/microbiology, Mannitol/chemistry, Nitrogen Fixation/physiology, Phaseolus/growth & development/microbiology, Plant Root Nodulation/physiology, Rhizobium/metabolism, Rhizosphere, Silicon Dioxide/chemistry, Sinorhizobium/metabolism, Soil/chemistry, Soil Microbiology, Starch/analogs & derivatives/chemistry, Symbiosis/physiology, Yeasts/chemistry
Metabolism	27129959	Distinct Mineral Weathering Behaviors of the Novel Mineral-Weathering Strains Rhizobium yantingense H66 and Rhizobium etli CFN42.	Chen W, Luo L, He LY, Wang Q, Sheng XF	Appl Environ Microbiol	10.1128/AEM.00918-16	2016	Bacterial Adhesion, Bacterial Load, Carboxylic Acids/metabolism, Microscopy, Electron, Scanning, Minerals/metabolism, Rhizobium/isolation & purification/metabolism/physiology, Silicates/metabolism	Enzymology
Metabolism	27226009	Transcriptomic analysis of the process of biofilm formation in Rhizobium etli CFN42.	Reyes-Perez A, Vargas Mdel C, Hernandez M, Aguirre-von-Wobeser E, Perez-Rueda E, Encarnacion S	Arch Microbiol	10.1007/s00203-016-1241-5	2016	4-Butyrolactone/analogs & derivatives/metabolism, Biofilms/growth & development, DNA, Bacterial/analysis, Gene Expression Regulation, Bacterial, Microarray Analysis, RNA, Bacterial/analysis, Rhizobium etli/genetics/physiology, Transcriptome/physiology	Transcriptome
Phylogeny	27236564	The symbiovar trifolii of Rhizobium bangladeshense and Rhizobium aegyptiacum sp. nov. nodulate Trifolium alexandrinum in Egypt.	Shamseldin A, Carro L, Peix A, Velazquez E, Moawad H, Sadowsky MJ	Syst Appl Microbiol	10.1016/j.syapm.2016.05.002	2016	Base Composition, Base Sequence, DNA, Bacterial/genetics, Egypt, Genes, Essential/genetics, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Rhizobium/classification/genetics/isolation & purification, Root Nodules, Plant/microbiology, Sequence Analysis, DNA, Symbiosis, Transcription Factors/genetics, Trifolium/microbiology	Phenotype
Genetics	27357704	Site-specific bacterial chromosome engineering mediated by IntA integrase from Rhizobium etli.	Hernandez-Tamayo R, Torres-Tejerizo G, Brom S, Romero D	BMC Microbiol	10.1186/s12866-016-0755-y	2016	Chromosomes, Bacterial, Conjugation, Genetic, DNA, DNA Nucleotidyltransferases/genetics/metabolism, DNA Replication, Escherichia coli/genetics, Flow Cytometry, Genetic Engineering/methods, Genetic Vectors, Green Fluorescent Proteins/genetics, Integrases/genetics, Lac Operon, Plasmids/genetics, Promoter Regions, Genetic, Recombination, Genetic, Rhizobium etli/enzymology/*genetics	Biotechnology
Enzymology	27919811	Biochemical characterization of a novel L-asparaginase from Paenibacillus barengoltzii being suitable for acrylamide reduction in potato chips and mooncakes.	Shi R, Liu Y, Mu Q, Jiang Z, Yang S	Int J Biol Macromol	10.1016/j.ijbiomac.2016.11.115	2016	Acrylamide/isolation & purification/metabolism, Amino Acid Sequence, Asparaginase/chemistry/genetics/metabolism, Cloning, Molecular, Enzyme Stability, Food Handling, Hydrogen-Ion Concentration, Kinetics, Oxidation-Reduction, Paenibacillus/enzymology, Sequence Analysis, Solanum tuberosum/chemistry, Substrate Specificity	Metabolism
Genetics	28163823	Draft genome sequence of type strain HBR26(T) and description of Rhizobium aethiopicum sp. nov.	Aserse AA, Woyke T, Kyrpides NC, Whitman WB, Lindstrom K	Stand Genomic Sci	10.1186/s40793-017-0220-z	2017		Phylogeny
Metabolism	29280343	The ropAe gene encodes a porin-like protein involved in copper transit in Rhizobium etli CFN42.	Gonzalez-Sanchez A, Cubillas CA, Miranda F, Davalos A, Garcia-de Los Santos A	Microbiologyopen	10.1002/mbo3.573	2017	Biological Transport, Copper/metabolism, Gene Expression Profiling, Gene Knockout Techniques, Genetic Complementation Test, Porins/genetics/metabolism, Rhizobium etli/genetics/*metabolism
	31037804	Conjugative transfer between Rhizobium etli endosymbionts inside the root nodule.	Banuelos-Vazquez LA, Torres Tejerizo G, Cervantes-De La Luz L, Girard L, Romero D, Brom S	Environ Microbiol	10.1111/1462-2920.14645	2019
	31134023	Rhizobium etli Produces Nitrous Oxide by Coupling the Assimilatory and Denitrification Pathways.	Hidalgo-Garcia A, Torres MJ, Salas A, Bedmar EJ, Girard L, Delgado MJ	Front Microbiol	10.3389/fmicb.2019.00980	2019
	31151153	Exo-Metabolites of Phaseolus vulgaris-Nodulating Rhizobial Strains.	Montes-Grajales D, Esturau-Escofet N, Esquivel B, Martinez-Romero E	Metabolites	10.3390/metabo9060105	2019
	31226020	Pathways of DNA Transfer to Plants from Agrobacterium tumefaciens and Related Bacterial Species.	Lacroix B, Citovsky V	Annu Rev Phytopathol	10.1146/annurev-phyto-082718-100101	2019	Agrobacterium tumefaciens, Bacteria, Bacterial Proteins, DNA, Bacterial, Gene Transfer, Horizontal, Plants, Virulence
Genetics	31689451	Plasmid pSfr64a and the symbiotic plasmid pSfr64b of Sinorhizobium fredii GR64 control each other's conjugative transfer through quorum-sensing elements.	Cervantes L, Miranda-Sanchez F, Torres Tejerizo G, Romero D, Brom S	Plasmid	10.1016/j.plasmid.2019.102443	2019	Bacterial Proteins/genetics, Conjugation, Genetic, Gene Expression Regulation, Bacterial, Genome, Bacterial, Mutation, Plasmids/genetics, Quorum Sensing, Rhizobium/physiology, Sinorhizobium fredii/physiology, Symbiosis
Metabolism	32112625	A novel way to synthesize pantothenate in bacteria involves beta-alanine synthase present in uracil degradation pathway.	Lopez-Samano M, Beltran LFL, Sanchez-Thomas R, Davalos A, Villasenor T, Garcia-Garcia JD, Garcia-de Los Santos A	Microbiologyopen	10.1002/mbo3.1006	2020	Agrobacterium/enzymology/genetics/metabolism, Amidohydrolases/genetics/metabolism, Carboxy-Lyases/genetics, Escherichia coli K12/enzymology/genetics/metabolism, Escherichia coli Proteins/genetics, Pantothenic Acid/biosynthesis, Rhizobium/enzymology/genetics/*metabolism, Uracil/metabolism, beta-Alanine/biosynthesis	Enzymology
Genetics	32845909	Role of plant compounds in the modulation of the conjugative transfer of pRet42a.	Banuelos-Vazquez LA, Castellani LG, Luchetti A, Romero D, Torres Tejerizo GA, Brom S	PLoS One	10.1371/journal.pone.0238218	2020	Conjugation, Genetic/genetics, DNA Helicases/genetics/metabolism, Phaseolus/chemistry/microbiology, Phytochemicals/pharmacology, Plasmids/genetics, Quorum Sensing/physiology, Rhizobium etli/genetics, Rhizosphere, Transcription Factors/genetics/metabolism	Metabolism
	32849381	Transfer of the Symbiotic Plasmid of Rhizobium etli CFN42 to Endophytic Bacteria Inside Nodules.	Banuelos-Vazquez LA, Cazares D, Rodriguez S, Cervantes-De la Luz L, Sanchez-Lopez R, Castellani LG, Tejerizo GT, Brom S	Front Microbiol	10.3389/fmicb.2020.01752	2020
Metabolism	35077343	A Tar aspartate receptor and Rubisco-like protein substitute biotin in the growth of rhizobial strains.	Vargas-Lagunas C, Mora Y, Aguilar A, Reyes-Gonzalez AR, Arteaga-Ide A, Dunn MF, Encarnacion S, Girard L, Peralta H, Mora J	Microbiology (Reading)	10.1099/mic.0.001130	2022	Bacterial Proteins/genetics/metabolism, Biotin/metabolism, Receptors, Amino Acid, Rhizobium/genetics/metabolism, Rhizobium etli/metabolism, Ribulose-Bisphosphate Carboxylase/metabolism
	36138843	The Role of Two Linear beta-Glucans Activated by c-di-GMP in Rhizobium etli CFN42.	Perez-Mendoza D, Romero-Jimenez L, Rodriguez-Carvajal MA, Lorite MJ, Munoz S, Olmedilla A, Sanjuan J	Biology (Basel)	10.3390/biology11091364	2022
Enzymology	36312930	Rhizobium etli CFN42 proteomes showed isoenzymes in free-living and symbiosis with a different transcriptional regulation inferred from a transcriptional regulatory network.	Taboada-Castro H, Gil J, Gomez-Caudillo L, Escorcia-Rodriguez JM, Freyre-Gonzalez JA, Encarnacion-Guevara S	Front Microbiol	10.3389/fmicb.2022.947678	2022		Proteome

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
4407	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11541)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-11541
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
41317	Curators of the CIP		https://brclims.pasteur.fr/brcWeb/souche/detail/1/16764
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg		10.1093/nar/gkaa1025	BRENDA, the ELIXIR core data resource in 2021: new developments and updates	Nucleic Acids Res. 49: D498-D508 2020	33211880
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
68371				Automatically annotated from API 50CH acid
68382				Automatically annotated from API zym
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
82811	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID10585.1	StrainInfo: A central database for resolving microbial strain identifiers
119136	Curators of the CIP	Collection of Institut Pasteur (CIP 104814)	https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104814