Strain identifier
BacDive ID: 13624
Type strain:
Species: Rhizobium tropici
Strain history: CIP <- 2002, P. De Lajudie, Montpellier, France: strain ORS 1163 <- 1989, LMG <- J. Vanderleyden, Rhizobium phaseoli
NCBI tax ID(s): 698761 (strain), 398 (species)
General
@ref: 4356
BacDive-ID: 13624
DSM-Number: 11418
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Rhizobium tropici DSM 11418 is a mesophilic, Gram-negative bacterium that was isolated from root nodule of Phaseolus vulgaris.
NCBI tax id
NCBI tax id | Matching level |
---|---|
398 | species |
698761 | strain |
strain history
@ref | history |
---|---|
4356 | <- K. Lindström <- D. Munns (Rhizobium phaseoli) <- R. Harper <- CIAT |
67770 | IAM 14206 <-- E. Martinez-Romero CIAT 899. |
123592 | CIP <- 2002, P. De Lajudie, Montpellier, France: strain ORS 1163 <- 1989, LMG <- J. Vanderleyden, Rhizobium phaseoli |
doi: 10.13145/bacdive13624.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Rhizobium
- species: Rhizobium tropici
- full scientific name: Rhizobium tropici Martínez-Romero et al. 1991
@ref: 4356
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Rhizobiaceae
genus: Rhizobium
species: Rhizobium tropici
full scientific name: Rhizobium tropici Martínez-Romero et al. 1991
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | negative | 99.959 | ||
123592 | negative | rod-shaped | no |
colony morphology
@ref | incubation period |
---|---|
4356 | 3-7 days |
123592 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
4356 | RHIZOBIUM MEDIUM (DSMZ Medium 98) | yes | https://mediadive.dsmz.de/medium/98 | Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water |
33110 | MEDIUM 296 - for Rhizobium | yes | Distilled water make up to (800.000 ml);Agar (15.000 g);Yeast extract (1.000 g);Mannitol (10.000 g);Earth extract - M0541 (200.000 ml) | |
123592 | CIP Medium 296 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=296 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
4356 | positive | growth | 30 | mesophilic |
33110 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 25 | mesophilic |
123592 | positive | growth | 25-37 | mesophilic |
123592 | no | growth | 10 | psychrophilic |
123592 | no | growth | 41 | thermophilic |
123592 | no | growth | 45 | thermophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.973 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
123592 | NaCl | positive | growth | 0-4 % |
123592 | NaCl | no | growth | 6 % |
123592 | NaCl | no | growth | 8 % |
123592 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | - | builds acid from | 15824 |
68371 | D-glucose | - | builds acid from | 17634 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
68369 | malate | + | assimilation | 25115 |
68369 | adipate | - | assimilation | 17128 |
68369 | decanoate | - | assimilation | 27689 |
68369 | maltose | + | assimilation | 17306 |
68369 | N-acetylglucosamine | + | assimilation | 59640 |
68369 | D-mannitol | + | assimilation | 16899 |
68369 | D-mannose | + | assimilation | 16024 |
68369 | L-arabinose | + | assimilation | 30849 |
68369 | D-glucose | + | assimilation | 17634 |
68369 | gelatin | - | hydrolysis | 5291 |
68369 | esculin | + | hydrolysis | 4853 |
68369 | urea | + | hydrolysis | 16199 |
68369 | arginine | - | hydrolysis | 29016 |
68369 | D-glucose | - | fermentation | 17634 |
68369 | tryptophan | - | energy source | 27897 |
68369 | nitrate | - | reduction | 17632 |
123592 | citrate | + | carbon source | 16947 |
123592 | esculin | + | hydrolysis | 4853 |
123592 | hippurate | + | hydrolysis | 606565 |
123592 | nitrate | - | reduction | 17632 |
123592 | nitrite | - | reduction | 16301 |
123592 | nitrate | - | respiration | 17632 |
antibiotic resistance
- @ref: 123592
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68369 | 35581 | indole | no |
123592 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test | methylred-test |
---|---|---|---|---|---|
68369 | 35581 | indole | - | ||
123592 | 15688 | acetoin | + | ||
123592 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
4356 | catalase | + | 1.11.1.6 |
4356 | cytochrome-c oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | + | 3.2.1.21 |
68369 | urease | + | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
123592 | oxidase | + | |
123592 | beta-galactosidase | + | 3.2.1.23 |
123592 | alcohol dehydrogenase | - | 1.1.1.1 |
123592 | gelatinase | - | |
123592 | amylase | - | |
123592 | DNase | - | |
123592 | caseinase | - | 3.4.21.50 |
123592 | catalase | + | 1.11.1.6 |
123592 | tween esterase | - | |
123592 | gamma-glutamyltransferase | + | 2.3.2.2 |
123592 | lecithinase | - | |
123592 | lipase | - | |
123592 | lysine decarboxylase | - | 4.1.1.18 |
123592 | ornithine decarboxylase | - | 4.1.1.17 |
123592 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
123592 | protease | - | |
123592 | tryptophan deaminase | - | |
123592 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | - | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123592 | - | + | + | - | - | + | + | - | + | - | + | + | - | + | - | + | + | + | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
4356 | - | - | - | - | + | + | - | + | + | + | + | + | + | + | +/- | - | - | + | + | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123592 | - | - | - | +/- | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123592 | + | + | + | + | + | - | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | - | + | + | + | - | - | + | + | + | + | + | + | + | - | + | + | - | - | + | - | - | - | - | + | + | + | + | - | + | - | - | + | - | - | + | + | - | + | - | + | - | - | - | - | - | - | + | - | - | - | - | - | - | - | + | + | - | - | - | - | - | + | - | - | + | - | - | - | - | + | - | - | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | geographic location | country | origin.country | continent |
---|---|---|---|---|---|---|
4356 | root nodule of Phaseolus vulgaris | Phaseolus vulgaris | South America | |||
67770 | Phaseolus vulgaris | Phaseolus vulgaris | Colombia | COL | Middle and South America | |
123592 | Phaseolus vulgaris L. | Columbia, Missouri | United States of America | USA | North America |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Root nodule |
taxonmaps
- @ref: 69479
- File name: preview.99_1577.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_62;97_65;98_1244;99_1577&stattab=map
- Last taxonomy: Rhizobiaceae
- 16S sequence: U89832
- Sequence Identity:
- Total samples: 5839
- soil counts: 3171
- aquatic counts: 403
- animal counts: 1252
- plant counts: 1013
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
4356 | 1 | Risk group (German classification) |
123592 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Rhizobium tropici strain CIAT 899 16S-23S intergenic spacer, partial sequence | AF271645 | 1072 | ena | 698761 |
20218 | Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence | AY491966 | 1157 | ena | 698761 |
20218 | Rhizobium tropici CIAT 899 16S ribosomal RNA gene, partial sequence | EU488752 | 1422 | ena | 698761 |
20218 | Rhizobium tropici CIAT 899 16S ribosomal RNA gene, partial sequence | HQ850704 | 1471 | ena | 698761 |
20218 | Rhizobium leguminosarum 16S ribosomal RNA, partial | M55233 | 260 | ena | 385 |
20218 | Rhizobium tropici 16S ribosomal RNA gene, partial sequence | U89832 | 1474 | ena | 698761 |
4356 | Rhizobium tropici gene for 16S rRNA, partial sequence, strain: NBRC 15247 | AB680818 | 1406 | ena | 398 |
67770 | Rhizobium tropici gene for 16S rRNA, strain: IAM 14206 | D12798 | 1434 | ena | 398 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Rhizobium tropici CIAT 899 | GCA_000330885 | complete | ncbi | 698761 |
66792 | Rhizobium tropici CIAT 899 | 698761.32 | plasmid | patric | 698761 |
66792 | Rhizobium tropici CIAT 899 | 698761.4 | complete | patric | 698761 |
66792 | Rhizobium tropici CIAT 899 | 698761.31 | plasmid | patric | 698761 |
66792 | Rhizobium tropici CIAT 899 | 698761.30 | plasmid | patric | 698761 |
66792 | Rhizobium tropici CIAT899 | 2524023199 | complete | img | 698761 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 84.313 | no |
flagellated | no | 79.166 | no |
gram-positive | no | 97.68 | no |
anaerobic | no | 98.183 | no |
aerobic | yes | 90.318 | no |
halophile | no | 93.086 | no |
spore-forming | no | 93.582 | no |
thermophile | no | 99.583 | no |
glucose-util | yes | 91.054 | no |
glucose-ferment | no | 87.302 | no |
External links
@ref: 4356
culture collection no.: DSM 11418, ATCC 49672, CIAT 899, HAMBI 1163, JCM 21072, IAM 14206, IFO 15247, LMG 9503, NBRC 15247, OUT 30011, CIP 107331, ORS 1163
straininfo link
- @ref: 82810
- straininfo: 4808
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 1377901 | Phylogenetic position of Rhizobium sp. strain Or 191, a symbiont of both Medicago sativa and Phaseolus vulgaris, based on partial sequences of the 16S rRNA and nifH genes. | Eardly BD, Young JP, Selander RK | Appl Environ Microbiol | 10.1128/aem.58.6.1809-1815.1992 | 1992 | Base Sequence, DNA, Bacterial/genetics, Fabaceae/microbiology, Genes, Bacterial, Hydrogen-Ion Concentration, Medicago sativa/microbiology, Microscopy, Electron, Molecular Sequence Data, Nitrogen Fixation/*genetics, Phylogeny, Plants, Medicinal, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/*genetics, Rhizobium/classification/*genetics/ultrastructure, Sequence Homology, Nucleic Acid, Symbiosis, Temperature | Genetics |
Phenotype | 1453954 | Molecular and symbiotic characterization of exopolysaccharide-deficient mutants of Rhizobium tropici strain CIAT899. | Milner JL, Araujo RS, Handelsman J | Mol Microbiol | 10.1111/j.1365-2958.1992.tb01770.x | 1992 | Cosmids, Mutation/genetics/physiology, Phenotype, Plants/*microbiology, Polysaccharides, Bacterial/*biosynthesis/genetics, Rhizobium/*genetics/physiology, Symbiosis/genetics/*physiology | |
Genetics | 7772799 | The nodS gene of Rhizobium tropici strain CIAT899 is necessary for nodulation on Phaseolus vulgaris and on Leucaena leucocephala. | Waelkens F, Voets T, Vlassak K, Vanderleyden J, van Rhijn P | Mol Plant Microbe Interact | 10.1094/mpmi-8-0147 | 1995 | Amino Acid Sequence, Bacterial Proteins/genetics/physiology, Base Sequence, *Carboxyl and Carbamoyl Transferases, Chromosome Mapping, DNA, Bacterial/genetics, Fabaceae/*microbiology, *Genes, Bacterial, Genetic Complementation Test, Lipopolysaccharides/metabolism, Methyltransferases/genetics/physiology, Molecular Sequence Data, Mutation, N-Acetylglucosaminyltransferases/genetics, *Plants, Medicinal, Rhizobium/*genetics/physiology, Sequence Homology, Amino Acid | Metabolism |
Enzymology | 7934929 | A Rhizobium tropici DNA region carrying the amino-terminal half of a nodD gene and a nod-box-like sequence confers host-range extension. | Sousa C, Folch JL, Boloix P, Megias M, Nava N, Quinto C | Mol Microbiol | 10.1111/j.1365-2958.1993.tb01245.x | 1993 | Amino Acid Sequence, Base Sequence, Blotting, Southern, Cloning, Molecular, Cosmids, DNA, Bacterial/chemistry/*genetics, Escherichia coli, Fabaceae/*microbiology, *Genes, Bacterial, Molecular Sequence Data, Plant Roots/microbiology, *Plants, Medicinal, Plasmids, Recombinant Fusion Proteins/biosynthesis, Restriction Mapping, Rhizobium/*genetics | Genetics |
Phylogeny | 8135515 | Classification of the uptake hydrogenase-positive (Hup+) bean rhizobia as Rhizobium tropici. | van Berkum P, Navarro RB, Vargas AA | Appl Environ Microbiol | 10.1128/aem.60.2.554-561.1994 | 1994 | Base Sequence, DNA, Bacterial/genetics, Genetic Linkage, Hydrogenase/*genetics, Molecular Sequence Data, Phenotype, Phylogeny, Rhizobium/*classification/enzymology/*genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Species Specificity | Enzymology |
8157617 | Analysis of the lipid moiety of lipopolysaccharide from Rhizobium tropici CIAT899: identification of 29-hydroxytriacontanoic acid. | Gil-Serrano AM, Gonzalez-Jimenez I, Tejero-Mateo P, Megias M, Romero-Vazquez MJ | J Bacteriol | 10.1128/jb.176.8.2454-2457.1994 | 1994 | Fatty Acids/*analysis, Hydroxy Acids/*analysis, Lipid A/*chemistry, Rhizobium/*chemistry | ||
Enzymology | 8419293 | Multiple copies of nodD in Rhizobium tropici CIAT899 and BR816. | van Rhijn PJ, Feys B, Verreth C, Vanderleyden J | J Bacteriol | 10.1128/jb.175.2.438-447.1993 | 1993 | Amino Acid Sequence, Bacterial Proteins/*genetics, Base Sequence, Cloning, Molecular, DNA Probes, DNA, Bacterial/genetics/isolation & purification, *Genes, Bacterial, *Genes, Regulator, Genomic Library, Molecular Sequence Data, *Multigene Family, Phylogeny, Plants/microbiology, Plasmids, Restriction Mapping, Rhizobium/*genetics, Sequence Homology, Amino Acid, Transcription Factors/*genetics | Phylogeny |
Genetics | 8529224 | Structural analysis of the O-antigen of the lipopolysaccharide of Rhizobium tropici CIAT899. | Gil-Serrano AM, Gonzalez-Jimenez I, Tejero Mateo P, Bernabe M, Jimenez-Barbero J, Megias M, Romero-Vazquez MJ | Carbohydr Res | 10.1016/0008-6215(95)00178-v | 1995 | Carbohydrate Sequence, Hydrolysis, Magnetic Resonance Spectroscopy, Methylation, Molecular Sequence Data, Monosaccharides/analysis, O Antigens/*chemistry, Oligosaccharides/chemistry, Rhizobium/*immunology | |
Enzymology | 8850086 | Characterization of Rhizobium tropici CIAT899 nodulation factors: the role of nodH and nodPQ genes in their sulfation. | Folch-Mallol JL, Marroqui S, Sousa C, Manyani H, Lopez-Lara IM, van der Drift KM, Haverkamp J, Quinto C, Gil-Serrano A, Thomas-Oates J, Spaink HP, Megias M | Mol Plant Microbe Interact | 10.1094/mpmi-9-0151 | 1996 | Amino Acid Sequence, Bacterial Proteins/chemistry/*genetics, Chromosome Mapping, Cloning, Molecular, Fabaceae/microbiology, *Genes, Bacterial, Molecular Sequence Data, Molecular Structure, *Multienzyme Complexes, Mutation, Nitrogen Fixation/genetics, Oligosaccharides/chemistry, Open Reading Frames, Phenotype, Plants, Medicinal, Rhizobium/chemistry/*genetics, Sequence Homology, Amino Acid, *Sulfate Adenylyltransferase, Sulfates/chemistry, Sulfotransferases/chemistry/*genetics | Genetics |
8864213 | A 150-megadalton plasmid in Rhizobium etli strain TAL182 contains genes for nodulation competitiveness on Phaseolus vulgaris L. | Borthakur D, Gao X | Can J Microbiol | 10.1139/m96-116 | 1996 | Cosmids/genetics, DNA Transposable Elements/genetics, Fabaceae/*microbiology, Genes, Bacterial/*physiology, Genetic Complementation Test, Mutagenesis, Site-Directed, Plant Roots/microbiology, *Plants, Medicinal, Plasmids/*genetics, Restriction Mapping, Rhizobium/*genetics, Sequence Homology, Nucleic Acid | ||
Genetics | 9671027 | Rhizobium tropici teu genes involved in specific uptake of Phaseolus vulgaris bean-exudate compounds. | Rosenblueth M, Hynes MF, Martinez-Romero E | Mol Gen Genet | 10.1007/s004380050772 | 1998 | ATP-Binding Cassette Transporters/genetics/physiology, Alkaloids/pharmacology, Amino Acid Sequence, Bacterial Proteins/genetics/physiology, Base Sequence, Carbohydrates/*pharmacology, Fabaceae/*chemistry/microbiology, Gene Expression Regulation, Bacterial/drug effects/*physiology, Genes, Bacterial/physiology, Molecular Sequence Data, Mutagenesis, Insertional, Open Reading Frames/genetics, Operon/genetics, Plant Roots/chemistry/microbiology, *Plants, Medicinal, Plasmids/genetics/physiology, Recombinant Fusion Proteins, Rhizobium/*genetics/*metabolism, Sequence Analysis, DNA, Sequence Homology, Amino Acid | Transcriptome |
Metabolism | 9768515 | Sulfation of nod factors via nodHPQ is nodD independent in Rhizobium tropici CIAT899. | Folch-Mallol JL, Manyani H, Marroqui S, Sousa C, Vargas C, Nava N, Colmenero-Flores JM, Quinto C, Megias M | Mol Plant Microbe Interact | 10.1094/MPMI.1998.11.10.979 | 1998 | Bacterial Proteins/genetics/metabolism, Base Sequence, Cosmids, DNA, Bacterial/genetics, Fabaceae/microbiology, Gene Expression, Genes, Bacterial, Lipopolysaccharides/*metabolism, Molecular Sequence Data, Operon, Phenotype, Plants, Medicinal, Plasmids/genetics, Rhizobium/*genetics/*metabolism, Sulfates/metabolism | Genetics |
Metabolism | 9782510 | Mutants of Rhizobium tropici strain CIAT899 that do not induce chlorosis in plants. | O'Connell KP, Raffel SJ, Saville BJ, Handelsman J | Microbiology (Reading) | 10.1099/00221287-144-9-2607 | 1998 | Amino Acid Sequence, Cell Movement/genetics, Cosmids, DNA Transposable Elements/genetics, Fabaceae/*microbiology, Gene Expression, Genes, Bacterial, Molecular Sequence Data, Mutagenesis, Insertional, *Mutation, Nitrates/metabolism, Nitrogen/metabolism, Nucleotidyltransferases/genetics/metabolism, Open Reading Frames, PII Nitrogen Regulatory Proteins, Physical Chromosome Mapping, Plant Diseases/etiology/microbiology, *Plants, Medicinal, Plasmids/genetics, Rhizobium/*genetics/*pathogenicity/physiology, Sequence Homology, Amino Acid, Virulence/genetics | Genetics |
Metabolism | 10692382 | Glutathione is involved in environmental stress responses in Rhizobium tropici, including acid tolerance. | Riccillo PM, Muglia CI, de Bruijn FJ, Roe AJ, Booth IR, Aguilar OM | J Bacteriol | 10.1128/JB.182.6.1748-1753.2000 | 2000 | DNA Transposable Elements, Fabaceae/microbiology, Glutathione/*metabolism, Hydrogen-Ion Concentration, Mutagenesis, Insertional, Osmotic Pressure, Plants, Medicinal, Plasmids/genetics, Potassium/metabolism, Pyruvaldehyde/toxicity, Rhizobium/genetics/*physiology | Stress |
Stress | 11059489 | A guaB mutant strain of Rhizobium tropici CIAT899 pleiotropically defective in thermal tolerance and symbiosis. | Riccillo PM, Collavino MM, Grasso DH, England R, de Bruijn FJ, Aguilar OM | Mol Plant Microbe Interact | 10.1094/MPMI.2000.13.11.1228 | 2000 | Allopurinol/pharmacology, Amino Acid Sequence, Enzyme Inhibitors/pharmacology, Fabaceae/*microbiology, Genes, Bacterial, Guanine/biosynthesis, Guanosine Tetraphosphate/metabolism, Heat-Shock Response, *Hot Temperature, IMP Dehydrogenase/*genetics, Molecular Sequence Data, Mutation, *Plants, Medicinal, Rhizobium/*genetics, Sequence Homology, Amino Acid, Symbiosis/*genetics, Xanthine Dehydrogenase/antagonists & inhibitors | Enzymology |
Enzymology | 11400050 | Periplasmic PQQ-dependent glucose oxidation in free-living and symbiotic rhizobia. | Bernardelli CE, Luna MF, Galar ML, Boiardi JL | Curr Microbiol | 10.1007/s002840010222 | 2001 | Culture Media, Glucose/*metabolism, Glucose Dehydrogenases/*metabolism, Medicago sativa/microbiology, Oxidation-Reduction, PQQ Cofactor, Periplasm/*enzymology, Plant Roots/chemistry/microbiology, Quinolones/analysis, Quinones/analysis, Rhizobium/*enzymology/growth & development, Sinorhizobium meliloti/*enzymology/growth & development, *Symbiosis | Cultivation |
Metabolism | 11467726 | Identification of a system that allows a Rhizobium tropici dctA mutant to grow on succinate, but not on other C4-dicarboxylates. | Batista S, Catalan AI, Hernandez-Lucas I, Martinez-Romero E, Aguilar OM, Martinez-Drets G | Can J Microbiol | 10.1139/w01-041 | 2001 | Amino Acid Sequence, Bacterial Proteins/*genetics/metabolism, Base Sequence, Biological Transport, Dicarboxylic Acid Transporters/*genetics/metabolism, Dicarboxylic Acids/*metabolism, Fabaceae/microbiology, Molecular Sequence Data, *Mutation, Rhizobium/genetics/*growth & development, Sequence Analysis, DNA, Succinic Acid/*metabolism, Symbiosis | Genetics |
Metabolism | 11467733 | Regulation of nod factor sulphation genes in Rhizobium tropici CIAT899. | Manyani H, Sousa C, Soria Diaz ME, Gil-Serrano A, Megias M | Can J Microbiol | 10.1139/w01-032 | 2001 | Bacterial Proteins/*genetics/metabolism, Chromatography, Thin Layer, Fabaceae/microbiology, *Gene Expression Regulation, Bacterial, Lipopolysaccharides/*metabolism, Operon, Plasmids, Rhizobium/*genetics/metabolism, Sulfates/*metabolism | |
11766056 | Co-inoculation with Bacillus sp. CECT 450 improves nodulation in Phaseolus vulgaris L. | Camacho M, Santamaria C, Temprano F, Rodriguez-Navarro DN, Daza A | Can J Microbiol | 10.1139/w01-107 | 2001 | Bacillus/*growth & development, Bradyrhizobium/growth & development, Coculture Techniques, Phaseolus/*growth & development/*microbiology, Plant Roots/growth & development/microbiology, Rhizobium/*growth & development, Symbiosis | ||
Genetics | 12575750 | Genetic analysis of a pH-regulated operon from Rhizobium tropici CIAT899 involved in acid tolerance and nodulation competitiveness. | Vinuesa P, Neumann-Silkow F, Pacios-Bras C, Spaink HP, Martinez-Romero E, Werner D | Mol Plant Microbe Interact | 10.1094/MPMI.2003.16.2.159 | 2003 | Adaptation, Physiological/*genetics/physiology, Bacterial Proteins/*genetics/metabolism, DNA Transposable Elements/genetics, DNA-Binding Proteins/genetics, Gene Expression Regulation, Bacterial, Genetic Complementation Test, Hydrogen-Ion Concentration, Molecular Sequence Data, Mutagenesis, Insertional, Mutation, Open Reading Frames/genetics, Operon/*genetics, Phaseolus/microbiology, Plant Roots/*microbiology, Restriction Mapping, Rhizobium/*genetics, Symbiosis/genetics, *Virulence Factors | Metabolism |
Enzymology | 15077631 | Nitrogenase and antioxidant enzyme activities in Phaseolus vulgaris nodules formed by Rhizobium tropici isogenic strains with varying tolerance to salt stress. | Tejera NA, Campos R, Sanjuan J, Lluch C | J Plant Physiol | 10.1078/0176-1617-01050 | 2004 | Antioxidants/*metabolism, Genes, Fungal, Mutation, Nitrogenase/*metabolism, Phaseolus/*enzymology/*microbiology, Rhizobium tropici/drug effects/genetics/*physiology, Sodium Chloride/pharmacology, Symbiosis/drug effects/genetics/physiology | Metabolism |
Phylogeny | 15702257 | High salt and high pH tolerance of new isolated Rhizobium etli strains from Egyptian soils. | Shamseldin A, Werner D | Curr Microbiol | 10.1007/s00284-004-4391-7 | 2005 | Adaptation, Physiological, Hydrogen-Ion Concentration, Nitrogen Fixation, Rhizobium etli/*physiology, Sodium Chloride/*pharmacology, *Soil Microbiology | |
Genetics | 15832683 | Nodule conductance varied among common bean (Phaseolus vulgaris) genotypes under phosphorus deficiency. | Jebara M, Aouani ME, Payre H, Drevon JJ | J Plant Physiol | 10.1016/j.jplph.2004.06.015 | 2005 | Oxygen Consumption, Phaseolus/drug effects/*growth & development/microbiology, Phosphorus/*deficiency, Plant Diseases/microbiology, Plant Roots/growth & development, Plant Shoots/growth & development, Rhizobium/pathogenicity | Pathogenicity |
Phenotype | 16042020 | GuaB activity is required in Rhizobium tropici during the early stages of nodulation of determinate nodules but is dispensable for the Sinorhizobium meliloti-alfalfa symbiotic interaction. | Collavino M, Riccillo PM, Grasso DH, Crespi M, Aguilar M | Mol Plant Microbe Interact | 10.1094/MPMI-18-0742 | 2005 | Artificial Gene Fusion, Base Sequence, DNA, Bacterial/genetics, Fabaceae/microbiology, Genes, Bacterial, Medicago sativa/*microbiology, Mutation, Phenotype, Plasmids/genetics, Promoter Regions, Genetic, Rhizobium tropici/genetics/*physiology, Sinorhizobium meliloti/genetics/*physiology, Symbiosis/genetics/physiology | |
Metabolism | 16183018 | An abundance of nodulation factors. | Kannenberg E, Carlson RW | Chem Biol | 10.1016/j.chembiol.2005.09.004 | 2005 | Bacterial Proteins/chemistry/*metabolism, Carbohydrate Sequence, Molecular Sequence Data, *Nitrogen Fixation, Rhizobium tropici/*metabolism | Genetics |
Enzymology | 16183027 | Low pH changes the profile of nodulation factors produced by Rhizobium tropici CIAT899. | Moron B, Soria-Diaz ME, Ault J, Verroios G, Noreen S, Rodriguez-Navarro DN, Gil-Serrano A, Thomas-Oates J, Megias M, Sousa C | Chem Biol | 10.1016/j.chembiol.2005.06.014 | 2005 | Adaptation, Physiological, Gene Expression, *Hydrogen-Ion Concentration, Lipopolysaccharides/*biosynthesis/isolation & purification, Mass Spectrometry, Methylation, Nitrogen Fixation/genetics, Phaseolus/growth & development/microbiology, Rhizobium tropici/*metabolism/physiology | Phylogeny |
Pathogenicity | 16348994 | Foliar Chlorosis in Symbiotic Host and Nonhost Plants Induced by Rhizobium tropici Type B Strains. | O'connell KP, Handelsman J | Appl Environ Microbiol | 10.1128/aem.59.7.2184-2189.1993 | 1993 | ||
Genetics | 16353552 | A ClC chloride channel homolog and ornithine-containing membrane lipids of Rhizobium tropici CIAT899 are involved in symbiotic efficiency and acid tolerance. | Rojas-Jimenez K, Sohlenkamp C, Geiger O, Martinez-Romero E, Werner D, Vinuesa P | Mol Plant Microbe Interact | 10.1094/MPMI-18-1175 | 2005 | Amino Acid Sequence, Chloride Channels/genetics/*physiology, Cosmids, Gene Expression Regulation, Bacterial, Genes, Bacterial, Genetic Complementation Test, Hydrogen-Ion Concentration, Membrane Lipids/chemistry/genetics/*physiology, Molecular Sequence Data, Mutagenesis, Insertional, Ornithine/chemistry, Phaseolus/cytology/microbiology, Phenotype, Reverse Transcriptase Polymerase Chain Reaction, Rhizobium tropici/genetics/*physiology, *Symbiosis/genetics | Phenotype |
Genetics | 17032614 | Genotypic variation of N2-fixing common bean (Phaseolus vulgaris L.) in response to iron deficiency. | Krouma A, Drevon JJ, Abdelly C | J Plant Physiol | 10.1016/j.jplph.2005.08.013 | 2005 | *Genetic Variation, Genotype, Iron/analysis, *Iron Deficiencies, Nitrogen/analysis, Nitrogen Fixation, Phaseolus/anatomy & histology/chemistry/*genetics/*physiology, Plant Diseases | |
Phylogeny | 17082403 | Rhizobium lusitanum sp. nov. a bacterium that nodulates Phaseolus vulgaris. | Valverde A, Igual JM, Peix A, Cervantes E, Velazquez E | Int J Syst Evol Microbiol | 10.1099/ijs.0.64402-0 | 2006 | Anti-Bacterial Agents/pharmacology, Bacterial Proteins/genetics, Bacterial Typing Techniques, Carbohydrate Metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA, Ribosomal Spacer/genetics, Genes, rRNA, Medicago sativa/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/genetics, Phaseolus/*microbiology, Phylogeny, Portugal, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Rhizobium/*classification/genetics/*isolation & purification/physiology, Sequence Homology, Nucleic Acid, Transcription Factors/genetics, Virulence/genetics | Genetics |
Metabolism | 17379738 | Rhizobium tropici response to acidity involves activation of glutathione synthesis. | Muglia CI, Grasso DH, Aguilar OM | Microbiology (Reading) | 10.1099/mic.0.2006/003483-0 | 2007 | Bacterial Proteins/metabolism, Base Sequence, Cloning, Molecular, Gene Expression Regulation, Bacterial, Genes, Bacterial, Glutathione/*metabolism, Hydrogen-Ion Concentration, Molecular Sequence Data, Phaseolus/microbiology, Promoter Regions, Genetic, Rhizobium tropici/*metabolism, *Soil Microbiology | Enzymology |
Metabolism | 17977153 | The lipid lysyl-phosphatidylglycerol is present in membranes of Rhizobium tropici CIAT899 and confers increased resistance to polymyxin B under acidic growth conditions. | Sohlenkamp C, Galindo-Lagunas KA, Guan Z, Vinuesa P, Robinson S, Thomas-Oates J, Raetz CR, Geiger O | Mol Plant Microbe Interact | 10.1094/MPMI-20-11-1421 | 2007 | Bacillus subtilis/genetics/metabolism, Cell Membrane/*chemistry, Cloning, Molecular, Drug Resistance, Bacterial, Escherichia coli/genetics/metabolism, Gene Expression Regulation, Bacterial, Genes, Bacterial, Hydrogen-Ion Concentration, Lysine/*analysis, Operon, Phosphatidylglycerols/*analysis, Polymyxin B/*pharmacology, Rhizobium tropici/*chemistry/*drug effects, Sinorhizobium meliloti/genetics/metabolism, Staphylococcus aureus/genetics/metabolism | Enzymology |
Genetics | 18312393 | Mutations in lipopolysaccharide biosynthetic genes impair maize rhizosphere and root colonization of Rhizobium tropici CIAT899. | Ormeno-Orrillo E, Rosenblueth M, Luyten E, Vanderleyden J, Martinez-Romero E | Environ Microbiol | 10.1111/j.1462-2920.2007.01541.x | 2008 | Anti-Bacterial Agents/pharmacology, Bacterial Proteins/*genetics, Lipopolysaccharides/*biosynthesis/chemistry/isolation & purification, Microbial Sensitivity Tests, Molecular Sequence Data, *Mutation, Phaseolus/microbiology, Plant Roots/*microbiology, Rhizobium tropici/drug effects/*genetics/*growth & development/metabolism, Sequence Analysis, DNA, *Soil Microbiology, Zea mays/*microbiology | Transcriptome |
Phylogeny | 18599718 | Rhizobium multihospitium sp. nov., isolated from multiple legume species native of Xinjiang, China. | Han TX, Wang ET, Wu LJ, Chen WF, Gu JG, Gu CT, Tian CF, Chen WX | Int J Syst Evol Microbiol | 10.1099/ijs.0.65568-0 | 2008 | China, DNA, Ribosomal Spacer/genetics, Fabaceae/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/genetics/*isolation & purification, Sequence Homology, Nucleic Acid, Species Specificity | Genetics |
Metabolism | 18657108 | Glutathione produced by Rhizobium tropici is important to prevent early senescence in common bean nodules. | Muglia C, Comai G, Spegazzini E, Riccillo PM, Aguilar OM | FEMS Microbiol Lett | 10.1111/j.1574-6968.2008.01285.x | 2008 | *Aging, Bacterial Proteins/genetics, Biomass, Gene Deletion, Gene Expression Profiling, Glutathione/*biosynthesis, Nitrogen Fixation, Phaseolus/chemistry/growth & development/*microbiology/*physiology, Plant Roots/chemistry/microbiology, Rhizobium tropici/*metabolism, Superoxides/analysis, *Symbiosis | |
Metabolism | 19260963 | Different and new Nod factors produced by Rhizobium tropici CIAT899 following Na+ stress. | Estevez J, Soria-Diaz ME, de Cordoba FF, Moron B, Manyani H, Gil A, Thomas-Oates J, van Brussel AA, Dardanelli MS, Sousa C, Megias M | FEMS Microbiol Lett | 10.1111/j.1574-6968.2009.01540.x | 2009 | Anti-Bacterial Agents/*pharmacology, Artificial Gene Fusion, Chromatography, High Pressure Liquid, Chromatography, Thin Layer, Gene Expression Profiling, Genes, Reporter, Lipopolysaccharides/*biosynthesis, Mass Spectrometry, *Osmotic Pressure, Rhizobium tropici/chemistry/*drug effects/metabolism, Sodium Chloride/*pharmacology, *Stress, Physiological, beta-Galactosidase/genetics/metabolism | Stress |
Metabolism | 19502401 | An alternative succinate (2-oxoglutarate) transport system in Rhizobium tropici is induced in nodules of Phaseolus vulgaris. | Batista S, Patriarca EJ, Tate R, Martinez-Drets G, Gill PR | J Bacteriol | 10.1128/JB.00252-09 | 2009 | Bacterial Proteins/genetics/physiology, Ketoglutaric Acids/*metabolism, Molecular Sequence Data, Multigene Family/genetics/physiology, Phaseolus/*microbiology, Rhizobium tropici/*growth & development/*metabolism, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Succinic Acid/*metabolism | Genetics |
Metabolism | 19755543 | Global changes in the transcript and metabolic profiles during symbiotic nitrogen fixation in phosphorus-stressed common bean plants. | Hernandez G, Valdes-Lopez O, Ramirez M, Goffard N, Weiller G, Aparicio-Fabre R, Fuentes SI, Erban A, Kopka J, Udvardi MK, Vance CP | Plant Physiol | 10.1104/pp.109.143842 | 2009 | Computational Biology, Expressed Sequence Tags, Gene Expression Profiling, Gene Expression Regulation, Plant, Gene Library, Genes, Plant, Metabolome, Molecular Sequence Data, Nitrogen Fixation/*genetics, Oligonucleotide Array Sequence Analysis, Phaseolus/genetics/*metabolism, Phosphorus/deficiency/*metabolism, RNA, Plant/metabolism, Rhizobium tropici, Root Nodules, Plant/genetics/metabolism, Sequence Analysis, DNA, *Symbiosis, Transcription Factors/genetics/metabolism | Transcriptome |
Enzymology | 19853428 | Experimental evidences of pSym transfer in a native peanut-associated rhizobia. | Ibanez F, Reinoso H, Fabra A | Microbiol Res | 10.1016/j.micres.2009.08.004 | 2009 | Arachis/*microbiology/physiology, Bacterial Proteins/*genetics, *Gene Transfer, Horizontal, Phaseolus/*microbiology/physiology, Plasmids/*genetics, Rhizobium/*genetics/isolation & purification/physiology, Root Nodules, Plant/microbiology/physiology, Symbiosis | Phylogeny |
Phylogeny | 20633304 | Biosynthesis of compatible solutes in rhizobial strains isolated from Phaseolus vulgaris nodules in Tunisian fields. | Fernandez-Aunion C, Hamouda TB, Iglesias-Guerra F, Argandona M, Reina-Bueno M, Nieto JJ, Aouani ME, Vargas C | BMC Microbiol | 10.1186/1471-2180-10-192 | 2010 | Molecular Sequence Data, Organic Chemicals/*metabolism, Phaseolus/*microbiology, Phylogeny, Rhizobium/classification/genetics/*isolation & purification/*metabolism, Root Nodules, Plant/*microbiology, Sodium Chloride/metabolism, *Soil Microbiology, Tunisia | Metabolism |
Metabolism | 21205018 | Hydroxylated ornithine lipids increase stress tolerance in Rhizobium tropici CIAT899. | Vences-Guzman MA, Guan Z, Ormeno-Orrillo E, Gonzalez-Silva N, Lopez-Lara IM, Martinez-Romero E, Geiger O, Sohlenkamp C | Mol Microbiol | 10.1111/j.1365-2958.2011.07535.x | 2011 | Bacterial Proteins/genetics/metabolism, Hydroxylation, Lipids/chemistry, Mixed Function Oxygenases/genetics/metabolism, Molecular Structure, Mutation, Ornithine/*analogs & derivatives/chemistry/metabolism, Rhizobium tropici/chemistry/enzymology/genetics/*physiology, Stress, Physiological | Stress |
Phylogeny | 22017109 | [Phenotypic and genotypic characterization of twelve rhizobial isolates from different regions of Venezuela]. | Eugenia Marquina M, Enrique Gonzalez N, Castro Y | Rev Biol Trop | 2011 | Genotype, Phenotype, Polymerase Chain Reaction, Polymorphism, Restriction Fragment Length, RNA, Bacterial/*genetics, RNA, Ribosomal, 16S/*genetics, Rhizobium/classification/*genetics/isolation & purification, Sensitivity and Specificity, *Soil Microbiology, Venezuela | Genetics | |
Metabolism | 22622392 | Is genotypic variation of H(+) efflux under P deficiency linked with nodulated-root respiration of N(2) fixing common-bean (Phaseolus vulgaris L.)? | Alkama N, Ounane G, Drevon JJ | J Plant Physiol | 10.1016/j.jplph.2012.03.013 | 2012 | Cell Respiration/genetics/physiology, Genotype, Nitrogen Fixation/genetics/physiology, Phaseolus/genetics/*metabolism, Phosphorus/*deficiency/metabolism, Plant Root Nodulation/genetics/*physiology, Plant Roots/genetics/*metabolism | Genetics |
Enzymology | 22771853 | A phosphoenol pyruvate phosphatase transcript is induced in the root nodule cortex of Phaseolus vulgaris under conditions of phosphorus deficiency. | Bargaz A, Ghoulam C, Amenc L, Lazali M, Faghire M, Abadie J, Drevon JJ | J Exp Bot | 10.1093/jxb/ers151 | 2012 | Acid Phosphatase/*genetics/metabolism, Adaptation, Physiological, Inbreeding, Nitrogen/metabolism, Nitrogen Fixation/genetics, Phaseolus/cytology/*enzymology/genetics/growth & development, Phosphorus/analysis/*deficiency, Plant Proteins/genetics/metabolism, Plant Root Nodulation, Plant Roots/cytology/enzymology/genetics/growth & development, Plant Shoots/cytology/enzymology/genetics/growth & development, RNA, Messenger/genetics, RNA, Plant/genetics, Rhizobium tropici/*physiology, Root Nodules, Plant/cytology/enzymology/genetics/growth & development, Seedlings/cytology/enzymology/genetics/growth & development, Symbiosis | Metabolism |
Phylogeny | 22941435 | Production of extracellular biopolymers and identification of intracellular proteins and Rhizobium tropici. | Oliveira J, Figueiredo M, Silva M, Malta M, Vendruscolo C, Almeida H | Curr Microbiol | 10.1007/s00284-012-0211-7 | 2012 | Bacterial Proteins/*chemistry/metabolism, Biopolymers/*biosynthesis/*chemistry, Culture Media, DNA, Bacterial/analysis/genetics, DNA, Ribosomal/analysis/genetics, Electrophoresis, Gel, Two-Dimensional, Mass Spectrometry/methods, RNA, Ribosomal, 16S/genetics, Rhizobium tropici/classification/genetics/growth & development/*metabolism, Viscosity | Metabolism |
Pathogenicity | 23216086 | High NaCl concentrations induce the nod genes of Rhizobium tropici CIAT899 in the absence of flavonoid inducers. | Guasch-Vidal B, Estevez J, Dardanelli MS, Soria-Diaz ME, de Cordoba FF, Balog CI, Manyani H, Gil-Serrano A, Thomas-Oates J, Hensbergen PJ, Deelder AM, Megias M, van Brussel AA | Mol Plant Microbe Interact | 10.1094/MPMI-09-12-0213-R | 2013 | Flavonoids/*pharmacology, Gene Expression Regulation, Plant/drug effects/genetics, Lipopolysaccharides/genetics/*metabolism, Rhizobium tropici/*drug effects/*metabolism, Sodium Chloride/*pharmacology | Metabolism |
Genetics | 23270491 | Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.). | Ormeno-Orrillo E, Menna P, Almeida LG, Ollero FJ, Nicolas MF, Pains Rodrigues E, Shigueyoshi Nakatani A, Silva Batista JS, Oliveira Chueire LM, Souza RC, Ribeiro Vasconcelos AT, Megias M, Hungria M, Martinez-Romero E | BMC Genomics | 10.1186/1471-2164-13-735 | 2012 | Adaptation, Physiological/*genetics, Agricultural Inoculants/cytology/*genetics/metabolism/physiology, Anti-Bacterial Agents/pharmacology, Biological Transport/genetics, Conserved Sequence/genetics, Drug Resistance, Bacterial/genetics, *Environment, Genome, Plant/genetics, *Genomics, Hydrogen-Ion Concentration, Hydrogenase/genetics, Iron/metabolism, Metals/pharmacology, Multigene Family/genetics, Nitrogen Fixation/genetics, Nitrosation/genetics, Osmotic Pressure, Oxidative Stress/genetics, Phaseolus/*microbiology/physiology, Phylogeny, Plant Growth Regulators/biosynthesis, Plant Root Nodulation/genetics, Plasmids/genetics, Polysaccharides/genetics, Rhizobium tropici/cytology/*genetics/metabolism/*physiology, Species Specificity, Stress, Physiological/genetics, Symbiosis/genetics, Temperature | Phylogeny |
Metabolism | 23575967 | Differential expression of trehalose 6-P phosphatase and ascorbate peroxidase transcripts in nodule cortex of Phaseolus vulgaris and regulation of nodule O2 permeability. | Bargaz A, Lazali M, Amenc L, Abadie J, Ghoulam C, Farissi M, Faghire M, Drevon JJ | Planta | 10.1007/s00425-013-1877-1 | 2013 | Ascorbate Peroxidases/*genetics/metabolism, Electrolytes/metabolism, Fluorescence, Gene Expression Regulation, Plant, Hydrogen Peroxide/metabolism, Nitrogen Fixation/genetics, Oxygen/*metabolism, Permeability, Phaseolus/*enzymology/genetics/growth & development, Phosphoric Monoester Hydrolases/*genetics/metabolism, Phosphorus/metabolism, Root Nodules, Plant/enzymology | Enzymology |
23594921 | Biotechnological potential of rhizobial metabolites to enhance the performance of Bradyrhizobium spp. and Azospirillum brasilense inoculants with soybean and maize. | Marks BB, Megias M, Nogueira MA, Hungria M | AMB Express | 10.1186/2191-0855-3-21 | 2013 | |||
Pathogenicity | 23652766 | Fast induction of biosynthetic polysaccharide genes lpxA, lpxE, and rkpI of Rhizobium sp. strain PRF 81 by common bean seed exudates is indicative of a key role in symbiosis. | Oliveira LR, Rodrigues EP, Marcelino-Guimaraes FC, Oliveira AL, Hungria M | Funct Integr Genomics | 10.1007/s10142-013-0322-7 | 2013 | Gene Expression Regulation, Bacterial/drug effects, Genes, Bacterial/*genetics, Phaseolus/*chemistry, Phylogeny, Plant Exudates/*pharmacology, Polysaccharides, Bacterial/*biosynthesis/genetics, Rhizobium/drug effects/*genetics, Seeds/*chemistry, Symbiosis/*drug effects/genetics | Phylogeny |
Metabolism | 23677567 | A phytase gene is overexpressed in root nodules cortex of Phaseolus vulgaris-rhizobia symbiosis under phosphorus deficiency. | Lazali M, Zaman-Allah M, Amenc L, Ounane G, Abadie J, Drevon JJ | Planta | 10.1007/s00425-013-1893-1 | 2013 | 6-Phytase/*genetics/metabolism, *Gene Expression Regulation, Enzymologic, Gene Expression Regulation, Plant, Inbreeding, Nitrogen/analysis/*metabolism, Nitrogen Fixation, Phaseolus/cytology/*enzymology/genetics/physiology, Phosphorus/*deficiency/metabolism, Phylogeny, Plant Proteins/genetics/metabolism, RNA, Messenger/genetics, RNA, Plant/genetics, Rhizobium/*physiology, Root Nodules, Plant/cytology/enzymology/genetics/physiology, Sequence Analysis, DNA, Symbiosis | Enzymology |
Enzymology | 23685936 | Effect of leguminous lectins on the growth of Rhizobium tropici CIAT899. | de Vasconcelos MA, Cunha CO, Arruda FV, Carneiro VA, Bastos RM, Mercante FM, do Nascimento KS, Cavada BS, dos Santos RP, Teixeira EH | Molecules | 10.3390/molecules18055792 | 2013 | Fabaceae/*chemistry, *Plant Lectins/chemistry/isolation & purification/pharmacology, Rhizobium tropici/*growth & development, Seeds/*chemistry | Phylogeny |
23961175 | Combined inoculation with Glomus intraradices and Rhizobium tropici CIAT899 increases phosphorus use efficiency for symbiotic nitrogen fixation in common bean (Phaseolus vulgaris L.). | Tajini F, Trabelsi M, Drevon JJ | Saudi J Biol Sci | 10.1016/j.sjbs.2011.11.003 | 2011 | |||
Metabolism | 24035519 | Discrimination against 15N among recombinant inbred lines of Phaseolus vulgaris L. contrasting in phosphorus use efficiency for nitrogen fixation. | Lazali M, Bargaz A, Carlsson G, Ounane SM, Drevon JJ | J Plant Physiol | 10.1016/j.jplph.2013.07.009 | 2013 | Nitrogen Fixation/*physiology, Nitrogen Isotopes/*metabolism, Phaseolus/*metabolism, Phosphorus/*metabolism | |
Metabolism | 24407511 | Localization of the Bacillus subtilis beta-propeller phytase transcripts in nodulated roots of Phaseolus vulgaris supplied with phytate. | Maougal RT, Bargaz A, Sahel C, Amenc L, Djekoun A, Plassard C, Drevon JJ | Planta | 10.1007/s00425-013-2023-9 | 2014 | 6-Phytase/*genetics/metabolism, Bacillus subtilis/*enzymology/genetics, Nitrogen Fixation, Phaseolus/cytology/growth & development/*microbiology, Phosphorus/*metabolism, Phytic Acid/*metabolism, Plant Root Nodulation, Plant Roots/cytology/growth & development/microbiology, Plant Shoots/cytology/growth & development/microbiology, RNA, Bacterial/genetics/metabolism, Rhizosphere, Symbiosis | Enzymology |
Metabolism | 24727788 | The nodule conductance to O(2) diffusion increases with phytase activity in N(2)-fixing Phaseolus vulgaris L. | Lazali M, Drevon JJ | Plant Physiol Biochem | 10.1016/j.plaphy.2014.03.023 | 2014 | 6-Phytase/*metabolism, Nitrogen Fixation/physiology, Oxygen/*metabolism, Phaseolus/*enzymology/*metabolism, Phosphorus/metabolism, Root Nodules, Plant/*metabolism | Enzymology |
Pathogenicity | 25880529 | Regulatory nodD1 and nodD2 genes of Rhizobium tropici strain CIAT 899 and their roles in the early stages of molecular signaling and host-legume nodulation. | del Cerro P, Rolla-Santos AA, Gomes DF, Marks BB, Perez-Montano F, Rodriguez-Carvajal MA, Nakatani AS, Gil-Serrano A, Megias M, Ollero FJ, Hungria M | BMC Genomics | 10.1186/s12864-015-1458-8 | 2015 | Apigenin/pharmacology, Bacterial Proteins/*genetics/metabolism, Fabaceae/growth & development/*microbiology, Gene Expression Regulation, Bacterial/drug effects, *Genes, Bacterial, Indoleacetic Acids/metabolism, Mutation, Nitrogen Fixation/drug effects, Phenotype, Plant Root Nodulation/drug effects, Plant Roots/microbiology, Rhizobium tropici/*genetics/physiology, Sodium Chloride/pharmacology, Symbiosis/genetics | Metabolism |
26403588 | Site-specific distribution and competitive ability of indigenous bean-nodulating rhizobia isolated from organic fields in Minnesota. | Wongphatcharachai M, Wang P, Staley C, Chun CL, Ferguson JA, Moncada KM, Sheaffer CC, Sadowsky MJ | J Biotechnol | 10.1016/j.jbiotec.2015.09.009 | 2015 | DNA, Bacterial/*genetics, Genetic Variation/genetics, Nitrogen Fixation, *Organic Agriculture, Phaseolus/*microbiology, Rhizobium/*genetics, Soil Microbiology | ||
Metabolism | 26502986 | Opening the "black box" of nodD3, nodD4 and nodD5 genes of Rhizobium tropici strain CIAT 899. | del Cerro P, Rolla-Santos AA, Gomes DF, Marks BB, del Rosario Espuny M, Rodriguez-Carvajal MA, Soria-Diaz ME, Nakatani AS, Hungria M, Ollero FJ, Megias M | BMC Genomics | 10.1186/s12864-015-2033-z | 2015 | Bacterial Proteins/*genetics/*metabolism, *Gene Expression Regulation, Bacterial, Rhizobium tropici/*genetics/*metabolism | |
26567001 | Maize growth promotion by inoculation with Azospirillum brasilense and metabolites of Rhizobium tropici enriched on lipo-chitooligosaccharides (LCOs). | Marks BB, Megias M, Ollero FJ, Nogueira MA, Araujo RS, Hungria M | AMB Express | 10.1186/s13568-015-0154-z | 2015 | |||
Transcriptome | 26951045 | RNA-seq analysis of the Rhizobium tropici CIAT 899 transcriptome shows similarities in the activation patterns of symbiotic genes in the presence of apigenin and salt. | Perez-Montano F, Del Cerro P, Jimenez-Guerrero I, Lopez-Baena FJ, Cubo MT, Hungria M, Megias M, Ollero FJ | BMC Genomics | 10.1186/s12864-016-2543-3 | 2016 | Apigenin/*chemistry, Base Sequence, Gene Expression Regulation, Bacterial, Indoleacetic Acids/metabolism, Operon, Plant Root Nodulation/genetics, Promoter Regions, Genetic, RNA, Bacterial/genetics, Rhizobium tropici/*genetics/physiology, Sequence Analysis, RNA, Sodium Chloride/*chemistry, Stress, Physiological, Symbiosis/*genetics, *Transcriptome | Metabolism |
27096734 | NrcR, a New Transcriptional Regulator of Rhizobium tropici CIAT 899 Involved in the Legume Root-Nodule Symbiosis. | Del Cerro P, Rolla-Santos AA, Valderrama-Fernandez R, Gil-Serrano A, Bellogin RA, Gomes DF, Perez-Montano F, Megias M, Hungria M, Ollero FJ | PLoS One | 10.1371/journal.pone.0154029 | 2016 | Bacterial Proteins/genetics, Biofilms/growth & development, Genes, Bacterial, Mutation, Nitrogen Fixation, Phaseolus/*microbiology/physiology, Plant Roots/*microbiology/physiology, Plasmids/genetics, Rhizobium tropici/*genetics/*physiology, *Symbiosis, Transcriptional Activation | ||
Stress | 27485828 | Genome of Rhizobium leucaenae strains CFN 299(T) and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions. | Ormeno-Orrillo E, Gomes DF, Del Cerro P, Vasconcelos AT, Canchaya C, Almeida LG, Mercante FM, Ollero FJ, Megias M, Hungria M | BMC Genomics | 10.1186/s12864-016-2859-z | 2016 | Adaptation, Biological/genetics, Environment, *Genes, Bacterial, *Genome, Bacterial, *Genomics/methods, Hot Temperature, Hydrogen-Ion Concentration, Nitrogen Fixation/genetics, Osmotic Pressure, Oxidative Stress/genetics, Phylogeny, Plant Root Nodulation/genetics, Plasmids/genetics, Rhizobium/classification/*genetics, Stress, Physiological/*genetics, Symbiosis/*genetics | Genetics |
Phylogeny | 27777012 | Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean. | Cardoso AA, Andraus MP, Borba TC, Martin-Didonet CC, Ferreira EP | Braz J Microbiol | 10.1016/j.bjm.2016.09.002 | 2016 | Adaptation, Biological, Carbon/metabolism, Environment, *Genotype, Phaseolus/classification/*genetics/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizobium/classification/isolation & purification/*physiology, Root Nodules, Plant/*microbiology, Salt Tolerance, *Symbiosis | Genetics |
Metabolism | 27845247 | Indole-3-acetic acid production via the indole-3-pyruvate pathway by plant growth promoter Rhizobium tropici CIAT 899 is strongly inhibited by ammonium. | Imada EL, Rolla Dos Santos AAP, Oliveira ALM, Hungria M, Rodrigues EP | Res Microbiol | 10.1016/j.resmic.2016.10.010 | 2016 | Ammonium Compounds/*pharmacology, Bacterial Proteins/genetics, Biosynthetic Pathways/genetics, Fabaceae/growth & development/physiology, Gene Expression Regulation, Bacterial, Indoleacetic Acids/*metabolism, Indoles/metabolism, Nitrogen Fixation/genetics, Plant Growth Regulators/*metabolism, Promoter Regions, Genetic, Real-Time Polymerase Chain Reaction, Rhizobium tropici/drug effects/*metabolism, Symbiosis | Biotechnology |
Biotechnology | 28071798 | Impact of rhizobial inoculation and reduced N supply on biomass production and biological N2 fixation in common bean grown hydroponically. | Kontopoulou CK, Liasis E, Iannetta PP, Tampakaki A, Savvas D | J Sci Food Agric | 10.1002/jsfa.8202 | 2017 | Agricultural Inoculants/*physiology, Biomass, Fertilizers/analysis, Hydroponics, Nitrogen/*metabolism, *Nitrogen Fixation, Phaseolus/microbiology/*physiology, Rhizobium/*physiology, Symbiosis | Metabolism |
Metabolism | 28488698 | The Rhizobium tropici CIAT 899 NodD2 protein regulates the production of Nod factors under salt stress in a flavonoid-independent manner. | Del Cerro P, Perez-Montano F, Gil-Serrano A, Lopez-Baena FJ, Megias M, Hungria M, Ollero FJ | Sci Rep | 10.1038/srep46712 | 2017 | Chitin/metabolism, Fabaceae/genetics/metabolism/microbiology, Flavonoids/metabolism, Gene Expression Regulation, Bacterial, Glucosamine/*analogs & derivatives/metabolism, Oligosaccharides/*metabolism, Phaseolus/genetics/metabolism/microbiology, Plant Proteins/genetics/*metabolism, Plant Root Nodulation/genetics, Protein Isoforms/genetics/metabolism, Rhizobium tropici/genetics/*metabolism/physiology, Salt Stress, Sulfates/metabolism, Symbiosis/genetics | Biotechnology |
29267254 | Transcriptomic Studies of the Effect of nod Gene-Inducing Molecules in Rhizobia: Different Weapons, One Purpose. | Jimenez-Guerrero I, Acosta-Jurado S, Del Cerro P, Navarro-Gomez P, Lopez-Baena FJ, Ollero FJ, Vinardell JM, Perez-Montano F | Genes (Basel) | 10.3390/genes9010001 | 2017 | |||
Metabolism | 29327464 | The expression of an exogenous ACC deaminase by the endophyte Serratia grimesii BXF1 promotes the early nodulation and growth of common bean. | Tavares MJ, Nascimento FX, Glick BR, Rossi MJ | Lett Appl Microbiol | 10.1111/lam.12847 | 2018 | Agricultural Inoculants, Bacterial Proteins/*metabolism, Carbon-Carbon Lyases/*metabolism, Endophytes/metabolism, Ethylenes/metabolism, Phaseolus/*growth & development/microbiology, Plant Root Nodulation/*physiology, Rhizobium tropici/*metabolism, Root Nodules, Plant/*microbiology, Serratia/*enzymology/genetics/metabolism, Symbiosis | Enzymology |
Phylogeny | 29571921 | Genetic diversity and symbiotic effectiveness of Phaseolus vulgaris-nodulating rhizobia in Kenya. | Mwenda GM, O'Hara GW, De Meyer SE, Howieson JG, Terpolilli JJ | Syst Appl Microbiol | 10.1016/j.syapm.2018.02.001 | 2018 | Bacterial Proteins/genetics, DNA, Bacterial/genetics, Kenya, N-Acetylglucosaminyltransferases/genetics, Nitrogen Fixation/physiology, Phaseolus/*microbiology, Phylogeny, Plant Root Nodulation/physiology, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, *Rhizobium/classification/genetics/isolation & purification, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Soil Microbiology, Symbiosis/genetics, Transcription Factors/genetics | Transcriptome |
Stress | 29760688 | Dissecting the Acid Stress Response of Rhizobium tropici CIAT 899. | Guerrero-Castro J, Lozano L, Sohlenkamp C | Front Microbiol | 10.3389/fmicb.2018.00846 | 2018 | ||
Pathogenicity | 29887272 | [Responses of the common bean (Phaseolus vulgaris L.) and Rhizobium tropici CIAT899 symbiosystem to induced allelopathy by Ipomoea purpurea L. Roth]. | Perez-Peralta PJ, Ferrera-Cerrato R, Alarcon A, Trejo-Tellez LI, Cruz-Ortega R, Silva-Rojas HV | Rev Argent Microbiol | 10.1016/j.ram.2018.01.006 | 2018 | *Allelopathy, *Ipomoea, Phaseolus/*drug effects/*microbiology/physiology, Plant Extracts/*pharmacology, Rhizobium tropici/*physiology, *Symbiosis | |
30393414 | Response of common bean (Phaseolus vulgaris L.) to nitrogen, phosphorus and rhizobia inoculation across variable soils in Zimbabwe. | Chekanai V, Chikowo R, Vanlauwe B | Agric Ecosyst Environ | 10.1016/j.agee.2018.08.010 | 2018 | |||
Metabolism | 30535938 | Revealing the roles of y4wF and tidC genes in Rhizobium tropici CIAT 899: biosynthesis of indolic compounds and impact on symbiotic properties. | Tullio LD, Nakatani AS, Gomes DF, Ollero FJ, Megias M, Hungria M | Arch Microbiol | 10.1007/s00203-018-1607-y | 2018 | Carboxy-Lyases/genetics/*metabolism, Genes, Bacterial, Indoleacetic Acids/*metabolism, Indoles/metabolism, Mutation, Phaseolus/microbiology/physiology, Polysaccharides, Bacterial/biosynthesis, Rhizobium tropici/chemistry/enzymology/*genetics/*metabolism, Symbiosis | Enzymology |
Metabolism | 30877322 | ACC deaminase plays a major role in Pseudomonas fluorescens YsS6 ability to promote the nodulation of Alpha- and Betaproteobacteria rhizobial strains. | Nascimento FX, Tavares MJ, Franck J, Ali S, Glick BR, Rossi MJ | Arch Microbiol | 10.1007/s00203-019-01649-5 | 2019 | Agricultural Inoculants/physiology, Alphaproteobacteria/*physiology, Bacterial Proteins/genetics/*metabolism, Carbon-Carbon Lyases/genetics/*metabolism, Cupriavidus/*physiology, Ethylenes/metabolism, Mimosa/*microbiology/physiology, Phaseolus/*microbiology/physiology, Plant Root Nodulation, Pseudomonas fluorescens/*enzymology/genetics | Enzymology |
Metabolism | 30917160 | Osmotic stress activates nif and fix genes and induces the Rhizobium tropici CIAT 899 Nod factor production via NodD2 by up-regulation of the nodA2 operon and the nodA3 gene. | Del Cerro P, Megias M, Lopez-Baena FJ, Gil-Serrano A, Perez-Montano F, Ollero FJ | PLoS One | 10.1371/journal.pone.0213298 | 2019 | Bacterial Proteins/genetics/*metabolism, Diuretics, Osmotic/pharmacology, *Gene Expression Regulation, Bacterial, High-Throughput Nucleotide Sequencing, Mannitol/pharmacology, *Operon, *Osmotic Pressure, Rhizobium tropici/drug effects/*genetics/growth & development/metabolism, Transcriptional Activation | Biotechnology |
Metabolism | 31081746 | Rhizobium tropici CIAT 899 copA gene plays a fundamental role in copper tolerance in both free life and symbiosis with Phaseolus vulgaris. | Elizalde-Diaz JP, Hernandez-Lucas I, Medina-Aparicio L, Davalos A, Leija A, Alvarado-Affantranger X, Garcia-Garcia JD, Hernandez G, Garcia-de Los Santos A | Microbiology (Reading) | 10.1099/mic.0.000803 | 2019 | Bacterial Proteins/genetics/*metabolism, Copper/*metabolism/toxicity, Hydrogen Peroxide/metabolism, Lipid Peroxidation/drug effects, Mutagenesis, Insertional, Mutation, Phaseolus/drug effects/growth & development/metabolism/*microbiology, Plant Root Nodulation/drug effects, Reactive Oxygen Species/metabolism, Rhizobium tropici/genetics/metabolism/*physiology, Root Nodules, Plant/drug effects/growth & development/metabolism/microbiology, Symbiosis | Pathogenicity |
31151153 | Exo-Metabolites of Phaseolus vulgaris-Nodulating Rhizobial Strains. | Montes-Grajales D, Esturau-Escofet N, Esquivel B, Martinez-Romero E | Metabolites | 10.3390/metabo9060105 | 2019 | |||
31184576 | Regulation of hsnT, nodF and nodE genes in Rhizobium tropici CIAT 899 and their roles in the synthesis of Nod factors and in the symbiosis. | Gomes DF, Tullio LD, Del Cerro P, Nakatani AS, Rolla-Santos AAP, Gil-Serrano A, Megias M, Ollero FJ, Hungria M | Microbiology (Reading) | 10.1099/mic.0.000824 | 2019 | Bacterial Proteins/*genetics, Gene Expression Regulation, Bacterial, Genes, Bacterial, Nitrogen Fixation/physiology, Phaseolus/microbiology, Plant Root Nodulation/*genetics, Rhizobium tropici/*genetics, Symbiosis/genetics | ||
Phylogeny | 31562174 | Genetic Interaction Studies Reveal Superior Performance of Rhizobium tropici CIAT899 on a Range of Diverse East African Common Bean (Phaseolus vulgaris L.) Genotypes. | Gunnabo AH, Geurts R, Wolde-Meskel E, Degefu T, Giller KE, van Heerwaarden J | Appl Environ Microbiol | 10.1128/AEM.01763-19 | 2019 | Gene Pool, *Genotype, Nitrogen, Nitrogen Fixation, Phaseolus/*genetics/growth & development/*microbiology, Phylogeny, Plant Root Nodulation, Rhizobium/classification/genetics/metabolism, Rhizobium tropici/classification/*genetics/metabolism, Symbiosis/genetics | Genetics |
31776251 | A bioinspired approach to engineer seed microenvironment to boost germination and mitigate soil salinity. | Zvinavashe AT, Lim E, Sun H, Marelli B | Proc Natl Acad Sci U S A | 10.1073/pnas.1915902116 | 2019 | Biocompatible Materials/chemistry, Bioengineering/*methods, Cellular Microenvironment/*physiology, Fibroins/chemistry, Germination/*physiology, Phaseolus, Plant Roots/physiology, Rhizobium, Salt Tolerance/physiology, Seeds/*physiology, Soil Microbiology, Trehalose/chemistry | ||
Metabolism | 31900709 | Hydrogen-uptake genes improve symbiotic efficiency in common beans (Phaseolus vulgaris L.). | Torres AR, Brito B, Imperial J, Palacios JM, Ciampitti IA, Ruiz-Argueso T, Hungria M | Antonie Van Leeuwenhoek | 10.1007/s10482-019-01381-6 | 2020 | Bacterial Proteins/genetics, Brazil, Genes, Bacterial, Hydrogen/metabolism, Hydrogenase/*genetics, Nitrogen/metabolism, Nitrogen Fixation/genetics, *Phaseolus/growth & development/metabolism/microbiology, *Plants, Genetically Modified, Rhizobium/*genetics, Root Nodules, Plant/genetics, Symbiosis/genetics | Enzymology |
Stress | 32290956 | Co-inoculation of maize with Azospirillum brasilense and Rhizobium tropici as a strategy to mitigate salinity stress. | Fukami J, de la Osa C, Ollero FJ, Megias M, Hungria M | Funct Plant Biol | 10.1071/FP17167 | 2018 | ||
Metabolism | 32709725 | OnfD, an AraC-Type Transcriptional Regulator Encoded by Rhizobium tropici CIAT 899 and Involved in Nod Factor Synthesis and Symbiosis. | Del Cerro P, Ayala-Garcia P, Buzon P, Castells-Graells R, Lopez-Baena FJ, Ollero FJ, Perez-Montano F | Appl Environ Microbiol | 10.1128/AEM.01297-20 | 2020 | AraC Transcription Factor/*genetics/metabolism, Bacterial Proteins/biosynthesis/*genetics/metabolism, Lotus/*microbiology, Phaseolus/*microbiology, Rhizobium tropici/*genetics/metabolism, Salt Stress/genetics, Symbiosis/*genetics, Transcriptional Activation/genetics | |
Phylogeny | 32804605 | Rhizobium dioscoreae sp. nov., a plant growth-promoting bacterium isolated from yam (Dioscorea species). | Ouyabe M, Tanaka N, Shiwa Y, Fujita N, Kikuno H, Babil P, Shiwachi H | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004381 | 2020 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Dioscorea/*microbiology, Endophytes, Fatty Acids/chemistry, Japan, Nitrogen Fixation, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/isolation & purification, Sequence Analysis, DNA | Transcriptome |
Phylogeny | 34566909 | Isolation and Characterization of High-Efficiency Rhizobia From Western Kenya Nodulating With Common Bean. | Wekesa CS, Furch ACU, Oelmuller R | Front Microbiol | 10.3389/fmicb.2021.697567 | 2021 | ||
35056588 | The nodD1 Gene of Sinorhizobium fredii HH103 Restores Nodulation Capacity on Bean in a Rhizobium tropici CIAT 899 nodD1/nodD2 Mutant, but the Secondary Symbiotic Regulators nolR, nodD2 or syrM Prevent HH103 to Nodulate with This Legume. | Fuentes-Romero F, Navarro-Gomez P, Ayala-Garcia P, Moyano-Bravo I, Lopez-Baena FJ, Perez-Montano F, Ollero-Marquez FJ, Acosta-Jurado S, Vinardell JM | Microorganisms | 10.3390/microorganisms10010139 | 2022 | |||
Metabolism | 35318614 | Priming of defense-related genes in Brassica oleracea var. capitata using concentrated metabolites produced by Rhizobium tropici CIAT 899. | Santos IR, Ribeiro DG, Tavora FTPK, Maximiano MR, Rabelo AC, Rios TB, Reis Junior FB, Megias M, Silva LP, Mehta A | Braz J Microbiol | 10.1007/s42770-022-00722-4 | 2022 | *Brassica/metabolism, Plant Leaves/microbiology, *Rhizobium tropici, *Xanthomonas campestris/genetics | |
Metabolism | 35901852 | The Rhizobium tropici CIAT 899 NodD2 protein promotes symbiosis and extends rhizobial nodulation range by constitutive nodulation factor synthesis. | Ayala-Garcia P, Jimenez-Guerrero I, Jacott CN, Lopez-Baena FJ, Ollero FJ, Del Cerro P, Perez-Montano F | J Exp Bot | 10.1093/jxb/erac325 | 2022 | *Rhizobium tropici/genetics, *Rhizobium, Symbiosis/genetics, Bacterial Proteins/genetics/metabolism, *Phaseolus/metabolism |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
4356 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11418) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11418 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
33110 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/4755 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68369 | Automatically annotated from API 20NE | |||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
82810 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID4808.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
123592 | Curators of the CIP | Collection of Institut Pasteur (CIP 107331) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107331 |