Strain identifier

BacDive ID: 13624

Type strain: Yes

Species: Rhizobium tropici

Strain history: CIP <- 2002, P. De Lajudie, Montpellier, France: strain ORS 1163 <- 1989, LMG <- J. Vanderleyden, Rhizobium phaseoli

NCBI tax ID(s): 698761 (strain), 398 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 4356

BacDive-ID: 13624

DSM-Number: 11418

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Rhizobium tropici DSM 11418 is a mesophilic, Gram-negative bacterium that was isolated from root nodule of Phaseolus vulgaris.

NCBI tax id

NCBI tax idMatching level
398species
698761strain

strain history

@refhistory
4356<- K. Lindström <- D. Munns (Rhizobium phaseoli) <- R. Harper <- CIAT
67770IAM 14206 <-- E. Martinez-Romero CIAT 899.
123592CIP <- 2002, P. De Lajudie, Montpellier, France: strain ORS 1163 <- 1989, LMG <- J. Vanderleyden, Rhizobium phaseoli

doi: 10.13145/bacdive13624.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Rhizobiaceae
  • genus: Rhizobium
  • species: Rhizobium tropici
  • full scientific name: Rhizobium tropici Martínez-Romero et al. 1991

@ref: 4356

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Rhizobiaceae

genus: Rhizobium

species: Rhizobium tropici

full scientific name: Rhizobium tropici Martínez-Romero et al. 1991

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.959
123592negativerod-shapedno

colony morphology

@refincubation period
43563-7 days
123592

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4356RHIZOBIUM MEDIUM (DSMZ Medium 98)yeshttps://mediadive.dsmz.de/medium/98Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water
33110MEDIUM 296 - for RhizobiumyesDistilled water make up to (800.000 ml);Agar (15.000 g);Yeast extract (1.000 g);Mannitol (10.000 g);Earth extract - M0541 (200.000 ml)
123592CIP Medium 296yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=296

culture temp

@refgrowthtypetemperaturerange
4356positivegrowth30mesophilic
33110positivegrowth30mesophilic
67770positivegrowth25mesophilic
123592positivegrowth25-37mesophilic
123592nogrowth10psychrophilic
123592nogrowth41thermophilic
123592nogrowth45thermophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.973

halophily

@refsaltgrowthtested relationconcentration
123592NaClpositivegrowth0-4 %
123592NaClnogrowth6 %
123592NaClnogrowth8 %
123592NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
68369malate+assimilation25115
68369adipate-assimilation17128
68369decanoate-assimilation27689
68369maltose+assimilation17306
68369N-acetylglucosamine+assimilation59640
68369D-mannitol+assimilation16899
68369D-mannose+assimilation16024
68369L-arabinose+assimilation30849
68369D-glucose+assimilation17634
68369gelatin-hydrolysis5291
68369esculin+hydrolysis4853
68369urea+hydrolysis16199
68369arginine-hydrolysis29016
68369D-glucose-fermentation17634
68369tryptophan-energy source27897
68369nitrate-reduction17632
123592citrate+carbon source16947
123592esculin+hydrolysis4853
123592hippurate+hydrolysis606565
123592nitrate-reduction17632
123592nitrite-reduction16301
123592nitrate-respiration17632

antibiotic resistance

  • @ref: 123592
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12359235581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole-
12359215688acetoin+
12359217234glucose-

enzymes

@refvalueactivityec
4356catalase+1.11.1.6
4356cytochrome-c oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6
123592oxidase+
123592beta-galactosidase+3.2.1.23
123592alcohol dehydrogenase-1.1.1.1
123592gelatinase-
123592amylase-
123592DNase-
123592caseinase-3.4.21.50
123592catalase+1.11.1.6
123592tween esterase-
123592gamma-glutamyltransferase+2.3.2.2
123592lecithinase-
123592lipase-
123592lysine decarboxylase-4.1.1.18
123592ornithine decarboxylase-4.1.1.17
123592phenylalanine ammonia-lyase-4.3.1.24
123592protease-
123592tryptophan deaminase-
123592urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123592-++--++-+-++-+-+++--

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
4356----++-++++++++/---++-

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
123592---+/------+/---------------+/------------------+/-------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123592+++++-+++++++++++++++++++-+++--+++++++-++--+----++++-+--+--++-+-+------+-------++-----+--+----+---+

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
4356root nodule of Phaseolus vulgarisPhaseolus vulgarisSouth America
67770Phaseolus vulgarisPhaseolus vulgarisColombiaCOLMiddle and South America
123592Phaseolus vulgaris L.Columbia, MissouriUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root nodule

taxonmaps

  • @ref: 69479
  • File name: preview.99_1577.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_62;97_65;98_1244;99_1577&stattab=map
  • Last taxonomy: Rhizobiaceae
  • 16S sequence: U89832
  • Sequence Identity:
  • Total samples: 5839
  • soil counts: 3171
  • aquatic counts: 403
  • animal counts: 1252
  • plant counts: 1013

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
43561Risk group (German classification)
1235921Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Rhizobium tropici strain CIAT 899 16S-23S intergenic spacer, partial sequenceAF2716451072ena698761
20218Rhizobium tropici strain CIAT899 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequenceAY4919661157ena698761
20218Rhizobium tropici CIAT 899 16S ribosomal RNA gene, partial sequenceEU4887521422ena698761
20218Rhizobium tropici CIAT 899 16S ribosomal RNA gene, partial sequenceHQ8507041471ena698761
20218Rhizobium leguminosarum 16S ribosomal RNA, partialM55233260ena385
20218Rhizobium tropici 16S ribosomal RNA gene, partial sequenceU898321474ena698761
4356Rhizobium tropici gene for 16S rRNA, partial sequence, strain: NBRC 15247AB6808181406ena398
67770Rhizobium tropici gene for 16S rRNA, strain: IAM 14206D127981434ena398

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Rhizobium tropici CIAT 899GCA_000330885completencbi698761
66792Rhizobium tropici CIAT 899698761.32plasmidpatric698761
66792Rhizobium tropici CIAT 899698761.4completepatric698761
66792Rhizobium tropici CIAT 899698761.31plasmidpatric698761
66792Rhizobium tropici CIAT 899698761.30plasmidpatric698761
66792Rhizobium tropici CIAT8992524023199completeimg698761

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes84.313no
flagellatedno79.166no
gram-positiveno97.68no
anaerobicno98.183no
aerobicyes90.318no
halophileno93.086no
spore-formingno93.582no
thermophileno99.583no
glucose-utilyes91.054no
glucose-fermentno87.302no

External links

@ref: 4356

culture collection no.: DSM 11418, ATCC 49672, CIAT 899, HAMBI 1163, JCM 21072, IAM 14206, IFO 15247, LMG 9503, NBRC 15247, OUT 30011, CIP 107331, ORS 1163

straininfo link

  • @ref: 82810
  • straininfo: 4808

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny1377901Phylogenetic position of Rhizobium sp. strain Or 191, a symbiont of both Medicago sativa and Phaseolus vulgaris, based on partial sequences of the 16S rRNA and nifH genes.Eardly BD, Young JP, Selander RKAppl Environ Microbiol10.1128/aem.58.6.1809-1815.19921992Base Sequence, DNA, Bacterial/genetics, Fabaceae/microbiology, Genes, Bacterial, Hydrogen-Ion Concentration, Medicago sativa/microbiology, Microscopy, Electron, Molecular Sequence Data, Nitrogen Fixation/*genetics, Phylogeny, Plants, Medicinal, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/*genetics, Rhizobium/classification/*genetics/ultrastructure, Sequence Homology, Nucleic Acid, Symbiosis, TemperatureGenetics
Phenotype1453954Molecular and symbiotic characterization of exopolysaccharide-deficient mutants of Rhizobium tropici strain CIAT899.Milner JL, Araujo RS, Handelsman JMol Microbiol10.1111/j.1365-2958.1992.tb01770.x1992Cosmids, Mutation/genetics/physiology, Phenotype, Plants/*microbiology, Polysaccharides, Bacterial/*biosynthesis/genetics, Rhizobium/*genetics/physiology, Symbiosis/genetics/*physiology
Genetics7772799The nodS gene of Rhizobium tropici strain CIAT899 is necessary for nodulation on Phaseolus vulgaris and on Leucaena leucocephala.Waelkens F, Voets T, Vlassak K, Vanderleyden J, van Rhijn PMol Plant Microbe Interact10.1094/mpmi-8-01471995Amino Acid Sequence, Bacterial Proteins/genetics/physiology, Base Sequence, *Carboxyl and Carbamoyl Transferases, Chromosome Mapping, DNA, Bacterial/genetics, Fabaceae/*microbiology, *Genes, Bacterial, Genetic Complementation Test, Lipopolysaccharides/metabolism, Methyltransferases/genetics/physiology, Molecular Sequence Data, Mutation, N-Acetylglucosaminyltransferases/genetics, *Plants, Medicinal, Rhizobium/*genetics/physiology, Sequence Homology, Amino AcidMetabolism
Enzymology7934929A Rhizobium tropici DNA region carrying the amino-terminal half of a nodD gene and a nod-box-like sequence confers host-range extension.Sousa C, Folch JL, Boloix P, Megias M, Nava N, Quinto CMol Microbiol10.1111/j.1365-2958.1993.tb01245.x1993Amino Acid Sequence, Base Sequence, Blotting, Southern, Cloning, Molecular, Cosmids, DNA, Bacterial/chemistry/*genetics, Escherichia coli, Fabaceae/*microbiology, *Genes, Bacterial, Molecular Sequence Data, Plant Roots/microbiology, *Plants, Medicinal, Plasmids, Recombinant Fusion Proteins/biosynthesis, Restriction Mapping, Rhizobium/*geneticsGenetics
Phylogeny8135515Classification of the uptake hydrogenase-positive (Hup+) bean rhizobia as Rhizobium tropici.van Berkum P, Navarro RB, Vargas AAAppl Environ Microbiol10.1128/aem.60.2.554-561.19941994Base Sequence, DNA, Bacterial/genetics, Genetic Linkage, Hydrogenase/*genetics, Molecular Sequence Data, Phenotype, Phylogeny, Rhizobium/*classification/enzymology/*genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Species SpecificityEnzymology
8157617Analysis of the lipid moiety of lipopolysaccharide from Rhizobium tropici CIAT899: identification of 29-hydroxytriacontanoic acid.Gil-Serrano AM, Gonzalez-Jimenez I, Tejero-Mateo P, Megias M, Romero-Vazquez MJJ Bacteriol10.1128/jb.176.8.2454-2457.19941994Fatty Acids/*analysis, Hydroxy Acids/*analysis, Lipid A/*chemistry, Rhizobium/*chemistry
Enzymology8419293Multiple copies of nodD in Rhizobium tropici CIAT899 and BR816.van Rhijn PJ, Feys B, Verreth C, Vanderleyden JJ Bacteriol10.1128/jb.175.2.438-447.19931993Amino Acid Sequence, Bacterial Proteins/*genetics, Base Sequence, Cloning, Molecular, DNA Probes, DNA, Bacterial/genetics/isolation & purification, *Genes, Bacterial, *Genes, Regulator, Genomic Library, Molecular Sequence Data, *Multigene Family, Phylogeny, Plants/microbiology, Plasmids, Restriction Mapping, Rhizobium/*genetics, Sequence Homology, Amino Acid, Transcription Factors/*geneticsPhylogeny
Genetics8529224Structural analysis of the O-antigen of the lipopolysaccharide of Rhizobium tropici CIAT899.Gil-Serrano AM, Gonzalez-Jimenez I, Tejero Mateo P, Bernabe M, Jimenez-Barbero J, Megias M, Romero-Vazquez MJCarbohydr Res10.1016/0008-6215(95)00178-v1995Carbohydrate Sequence, Hydrolysis, Magnetic Resonance Spectroscopy, Methylation, Molecular Sequence Data, Monosaccharides/analysis, O Antigens/*chemistry, Oligosaccharides/chemistry, Rhizobium/*immunology
Enzymology8850086Characterization of Rhizobium tropici CIAT899 nodulation factors: the role of nodH and nodPQ genes in their sulfation.Folch-Mallol JL, Marroqui S, Sousa C, Manyani H, Lopez-Lara IM, van der Drift KM, Haverkamp J, Quinto C, Gil-Serrano A, Thomas-Oates J, Spaink HP, Megias MMol Plant Microbe Interact10.1094/mpmi-9-01511996Amino Acid Sequence, Bacterial Proteins/chemistry/*genetics, Chromosome Mapping, Cloning, Molecular, Fabaceae/microbiology, *Genes, Bacterial, Molecular Sequence Data, Molecular Structure, *Multienzyme Complexes, Mutation, Nitrogen Fixation/genetics, Oligosaccharides/chemistry, Open Reading Frames, Phenotype, Plants, Medicinal, Rhizobium/chemistry/*genetics, Sequence Homology, Amino Acid, *Sulfate Adenylyltransferase, Sulfates/chemistry, Sulfotransferases/chemistry/*geneticsGenetics
8864213A 150-megadalton plasmid in Rhizobium etli strain TAL182 contains genes for nodulation competitiveness on Phaseolus vulgaris L.Borthakur D, Gao XCan J Microbiol10.1139/m96-1161996Cosmids/genetics, DNA Transposable Elements/genetics, Fabaceae/*microbiology, Genes, Bacterial/*physiology, Genetic Complementation Test, Mutagenesis, Site-Directed, Plant Roots/microbiology, *Plants, Medicinal, Plasmids/*genetics, Restriction Mapping, Rhizobium/*genetics, Sequence Homology, Nucleic Acid
Genetics9671027Rhizobium tropici teu genes involved in specific uptake of Phaseolus vulgaris bean-exudate compounds.Rosenblueth M, Hynes MF, Martinez-Romero EMol Gen Genet10.1007/s0043800507721998ATP-Binding Cassette Transporters/genetics/physiology, Alkaloids/pharmacology, Amino Acid Sequence, Bacterial Proteins/genetics/physiology, Base Sequence, Carbohydrates/*pharmacology, Fabaceae/*chemistry/microbiology, Gene Expression Regulation, Bacterial/drug effects/*physiology, Genes, Bacterial/physiology, Molecular Sequence Data, Mutagenesis, Insertional, Open Reading Frames/genetics, Operon/genetics, Plant Roots/chemistry/microbiology, *Plants, Medicinal, Plasmids/genetics/physiology, Recombinant Fusion Proteins, Rhizobium/*genetics/*metabolism, Sequence Analysis, DNA, Sequence Homology, Amino AcidTranscriptome
Metabolism9768515Sulfation of nod factors via nodHPQ is nodD independent in Rhizobium tropici CIAT899.Folch-Mallol JL, Manyani H, Marroqui S, Sousa C, Vargas C, Nava N, Colmenero-Flores JM, Quinto C, Megias MMol Plant Microbe Interact10.1094/MPMI.1998.11.10.9791998Bacterial Proteins/genetics/metabolism, Base Sequence, Cosmids, DNA, Bacterial/genetics, Fabaceae/microbiology, Gene Expression, Genes, Bacterial, Lipopolysaccharides/*metabolism, Molecular Sequence Data, Operon, Phenotype, Plants, Medicinal, Plasmids/genetics, Rhizobium/*genetics/*metabolism, Sulfates/metabolismGenetics
Metabolism9782510Mutants of Rhizobium tropici strain CIAT899 that do not induce chlorosis in plants.O'Connell KP, Raffel SJ, Saville BJ, Handelsman JMicrobiology (Reading)10.1099/00221287-144-9-26071998Amino Acid Sequence, Cell Movement/genetics, Cosmids, DNA Transposable Elements/genetics, Fabaceae/*microbiology, Gene Expression, Genes, Bacterial, Molecular Sequence Data, Mutagenesis, Insertional, *Mutation, Nitrates/metabolism, Nitrogen/metabolism, Nucleotidyltransferases/genetics/metabolism, Open Reading Frames, PII Nitrogen Regulatory Proteins, Physical Chromosome Mapping, Plant Diseases/etiology/microbiology, *Plants, Medicinal, Plasmids/genetics, Rhizobium/*genetics/*pathogenicity/physiology, Sequence Homology, Amino Acid, Virulence/geneticsGenetics
Metabolism10692382Glutathione is involved in environmental stress responses in Rhizobium tropici, including acid tolerance.Riccillo PM, Muglia CI, de Bruijn FJ, Roe AJ, Booth IR, Aguilar OMJ Bacteriol10.1128/JB.182.6.1748-1753.20002000DNA Transposable Elements, Fabaceae/microbiology, Glutathione/*metabolism, Hydrogen-Ion Concentration, Mutagenesis, Insertional, Osmotic Pressure, Plants, Medicinal, Plasmids/genetics, Potassium/metabolism, Pyruvaldehyde/toxicity, Rhizobium/genetics/*physiologyStress
Stress11059489A guaB mutant strain of Rhizobium tropici CIAT899 pleiotropically defective in thermal tolerance and symbiosis.Riccillo PM, Collavino MM, Grasso DH, England R, de Bruijn FJ, Aguilar OMMol Plant Microbe Interact10.1094/MPMI.2000.13.11.12282000Allopurinol/pharmacology, Amino Acid Sequence, Enzyme Inhibitors/pharmacology, Fabaceae/*microbiology, Genes, Bacterial, Guanine/biosynthesis, Guanosine Tetraphosphate/metabolism, Heat-Shock Response, *Hot Temperature, IMP Dehydrogenase/*genetics, Molecular Sequence Data, Mutation, *Plants, Medicinal, Rhizobium/*genetics, Sequence Homology, Amino Acid, Symbiosis/*genetics, Xanthine Dehydrogenase/antagonists & inhibitorsEnzymology
Enzymology11400050Periplasmic PQQ-dependent glucose oxidation in free-living and symbiotic rhizobia.Bernardelli CE, Luna MF, Galar ML, Boiardi JLCurr Microbiol10.1007/s0028400102222001Culture Media, Glucose/*metabolism, Glucose Dehydrogenases/*metabolism, Medicago sativa/microbiology, Oxidation-Reduction, PQQ Cofactor, Periplasm/*enzymology, Plant Roots/chemistry/microbiology, Quinolones/analysis, Quinones/analysis, Rhizobium/*enzymology/growth & development, Sinorhizobium meliloti/*enzymology/growth & development, *SymbiosisCultivation
Metabolism11467726Identification of a system that allows a Rhizobium tropici dctA mutant to grow on succinate, but not on other C4-dicarboxylates.Batista S, Catalan AI, Hernandez-Lucas I, Martinez-Romero E, Aguilar OM, Martinez-Drets GCan J Microbiol10.1139/w01-0412001Amino Acid Sequence, Bacterial Proteins/*genetics/metabolism, Base Sequence, Biological Transport, Dicarboxylic Acid Transporters/*genetics/metabolism, Dicarboxylic Acids/*metabolism, Fabaceae/microbiology, Molecular Sequence Data, *Mutation, Rhizobium/genetics/*growth & development, Sequence Analysis, DNA, Succinic Acid/*metabolism, SymbiosisGenetics
Metabolism11467733Regulation of nod factor sulphation genes in Rhizobium tropici CIAT899.Manyani H, Sousa C, Soria Diaz ME, Gil-Serrano A, Megias MCan J Microbiol10.1139/w01-0322001Bacterial Proteins/*genetics/metabolism, Chromatography, Thin Layer, Fabaceae/microbiology, *Gene Expression Regulation, Bacterial, Lipopolysaccharides/*metabolism, Operon, Plasmids, Rhizobium/*genetics/metabolism, Sulfates/*metabolism
11766056Co-inoculation with Bacillus sp. CECT 450 improves nodulation in Phaseolus vulgaris L.Camacho M, Santamaria C, Temprano F, Rodriguez-Navarro DN, Daza ACan J Microbiol10.1139/w01-1072001Bacillus/*growth & development, Bradyrhizobium/growth & development, Coculture Techniques, Phaseolus/*growth & development/*microbiology, Plant Roots/growth & development/microbiology, Rhizobium/*growth & development, Symbiosis
Genetics12575750Genetic analysis of a pH-regulated operon from Rhizobium tropici CIAT899 involved in acid tolerance and nodulation competitiveness.Vinuesa P, Neumann-Silkow F, Pacios-Bras C, Spaink HP, Martinez-Romero E, Werner DMol Plant Microbe Interact10.1094/MPMI.2003.16.2.1592003Adaptation, Physiological/*genetics/physiology, Bacterial Proteins/*genetics/metabolism, DNA Transposable Elements/genetics, DNA-Binding Proteins/genetics, Gene Expression Regulation, Bacterial, Genetic Complementation Test, Hydrogen-Ion Concentration, Molecular Sequence Data, Mutagenesis, Insertional, Mutation, Open Reading Frames/genetics, Operon/*genetics, Phaseolus/microbiology, Plant Roots/*microbiology, Restriction Mapping, Rhizobium/*genetics, Symbiosis/genetics, *Virulence FactorsMetabolism
Enzymology15077631Nitrogenase and antioxidant enzyme activities in Phaseolus vulgaris nodules formed by Rhizobium tropici isogenic strains with varying tolerance to salt stress.Tejera NA, Campos R, Sanjuan J, Lluch CJ Plant Physiol10.1078/0176-1617-010502004Antioxidants/*metabolism, Genes, Fungal, Mutation, Nitrogenase/*metabolism, Phaseolus/*enzymology/*microbiology, Rhizobium tropici/drug effects/genetics/*physiology, Sodium Chloride/pharmacology, Symbiosis/drug effects/genetics/physiologyMetabolism
Phylogeny15702257High salt and high pH tolerance of new isolated Rhizobium etli strains from Egyptian soils.Shamseldin A, Werner DCurr Microbiol10.1007/s00284-004-4391-72005Adaptation, Physiological, Hydrogen-Ion Concentration, Nitrogen Fixation, Rhizobium etli/*physiology, Sodium Chloride/*pharmacology, *Soil Microbiology
Genetics15832683Nodule conductance varied among common bean (Phaseolus vulgaris) genotypes under phosphorus deficiency.Jebara M, Aouani ME, Payre H, Drevon JJJ Plant Physiol10.1016/j.jplph.2004.06.0152005Oxygen Consumption, Phaseolus/drug effects/*growth & development/microbiology, Phosphorus/*deficiency, Plant Diseases/microbiology, Plant Roots/growth & development, Plant Shoots/growth & development, Rhizobium/pathogenicityPathogenicity
Phenotype16042020GuaB activity is required in Rhizobium tropici during the early stages of nodulation of determinate nodules but is dispensable for the Sinorhizobium meliloti-alfalfa symbiotic interaction.Collavino M, Riccillo PM, Grasso DH, Crespi M, Aguilar MMol Plant Microbe Interact10.1094/MPMI-18-07422005Artificial Gene Fusion, Base Sequence, DNA, Bacterial/genetics, Fabaceae/microbiology, Genes, Bacterial, Medicago sativa/*microbiology, Mutation, Phenotype, Plasmids/genetics, Promoter Regions, Genetic, Rhizobium tropici/genetics/*physiology, Sinorhizobium meliloti/genetics/*physiology, Symbiosis/genetics/physiology
Metabolism16183018An abundance of nodulation factors.Kannenberg E, Carlson RWChem Biol10.1016/j.chembiol.2005.09.0042005Bacterial Proteins/chemistry/*metabolism, Carbohydrate Sequence, Molecular Sequence Data, *Nitrogen Fixation, Rhizobium tropici/*metabolismGenetics
Enzymology16183027Low pH changes the profile of nodulation factors produced by Rhizobium tropici CIAT899.Moron B, Soria-Diaz ME, Ault J, Verroios G, Noreen S, Rodriguez-Navarro DN, Gil-Serrano A, Thomas-Oates J, Megias M, Sousa CChem Biol10.1016/j.chembiol.2005.06.0142005Adaptation, Physiological, Gene Expression, *Hydrogen-Ion Concentration, Lipopolysaccharides/*biosynthesis/isolation & purification, Mass Spectrometry, Methylation, Nitrogen Fixation/genetics, Phaseolus/growth & development/microbiology, Rhizobium tropici/*metabolism/physiologyPhylogeny
Pathogenicity16348994Foliar Chlorosis in Symbiotic Host and Nonhost Plants Induced by Rhizobium tropici Type B Strains.O'connell KP, Handelsman JAppl Environ Microbiol10.1128/aem.59.7.2184-2189.19931993
Genetics16353552A ClC chloride channel homolog and ornithine-containing membrane lipids of Rhizobium tropici CIAT899 are involved in symbiotic efficiency and acid tolerance.Rojas-Jimenez K, Sohlenkamp C, Geiger O, Martinez-Romero E, Werner D, Vinuesa PMol Plant Microbe Interact10.1094/MPMI-18-11752005Amino Acid Sequence, Chloride Channels/genetics/*physiology, Cosmids, Gene Expression Regulation, Bacterial, Genes, Bacterial, Genetic Complementation Test, Hydrogen-Ion Concentration, Membrane Lipids/chemistry/genetics/*physiology, Molecular Sequence Data, Mutagenesis, Insertional, Ornithine/chemistry, Phaseolus/cytology/microbiology, Phenotype, Reverse Transcriptase Polymerase Chain Reaction, Rhizobium tropici/genetics/*physiology, *Symbiosis/geneticsPhenotype
Genetics17032614Genotypic variation of N2-fixing common bean (Phaseolus vulgaris L.) in response to iron deficiency.Krouma A, Drevon JJ, Abdelly CJ Plant Physiol10.1016/j.jplph.2005.08.0132005*Genetic Variation, Genotype, Iron/analysis, *Iron Deficiencies, Nitrogen/analysis, Nitrogen Fixation, Phaseolus/anatomy & histology/chemistry/*genetics/*physiology, Plant Diseases
Phylogeny17082403Rhizobium lusitanum sp. nov. a bacterium that nodulates Phaseolus vulgaris.Valverde A, Igual JM, Peix A, Cervantes E, Velazquez EInt J Syst Evol Microbiol10.1099/ijs.0.64402-02006Anti-Bacterial Agents/pharmacology, Bacterial Proteins/genetics, Bacterial Typing Techniques, Carbohydrate Metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA, Ribosomal Spacer/genetics, Genes, rRNA, Medicago sativa/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/genetics, Phaseolus/*microbiology, Phylogeny, Portugal, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Rhizobium/*classification/genetics/*isolation & purification/physiology, Sequence Homology, Nucleic Acid, Transcription Factors/genetics, Virulence/geneticsGenetics
Metabolism17379738Rhizobium tropici response to acidity involves activation of glutathione synthesis.Muglia CI, Grasso DH, Aguilar OMMicrobiology (Reading)10.1099/mic.0.2006/003483-02007Bacterial Proteins/metabolism, Base Sequence, Cloning, Molecular, Gene Expression Regulation, Bacterial, Genes, Bacterial, Glutathione/*metabolism, Hydrogen-Ion Concentration, Molecular Sequence Data, Phaseolus/microbiology, Promoter Regions, Genetic, Rhizobium tropici/*metabolism, *Soil MicrobiologyEnzymology
Metabolism17977153The lipid lysyl-phosphatidylglycerol is present in membranes of Rhizobium tropici CIAT899 and confers increased resistance to polymyxin B under acidic growth conditions.Sohlenkamp C, Galindo-Lagunas KA, Guan Z, Vinuesa P, Robinson S, Thomas-Oates J, Raetz CR, Geiger OMol Plant Microbe Interact10.1094/MPMI-20-11-14212007Bacillus subtilis/genetics/metabolism, Cell Membrane/*chemistry, Cloning, Molecular, Drug Resistance, Bacterial, Escherichia coli/genetics/metabolism, Gene Expression Regulation, Bacterial, Genes, Bacterial, Hydrogen-Ion Concentration, Lysine/*analysis, Operon, Phosphatidylglycerols/*analysis, Polymyxin B/*pharmacology, Rhizobium tropici/*chemistry/*drug effects, Sinorhizobium meliloti/genetics/metabolism, Staphylococcus aureus/genetics/metabolismEnzymology
Genetics18312393Mutations in lipopolysaccharide biosynthetic genes impair maize rhizosphere and root colonization of Rhizobium tropici CIAT899.Ormeno-Orrillo E, Rosenblueth M, Luyten E, Vanderleyden J, Martinez-Romero EEnviron Microbiol10.1111/j.1462-2920.2007.01541.x2008Anti-Bacterial Agents/pharmacology, Bacterial Proteins/*genetics, Lipopolysaccharides/*biosynthesis/chemistry/isolation & purification, Microbial Sensitivity Tests, Molecular Sequence Data, *Mutation, Phaseolus/microbiology, Plant Roots/*microbiology, Rhizobium tropici/drug effects/*genetics/*growth & development/metabolism, Sequence Analysis, DNA, *Soil Microbiology, Zea mays/*microbiologyTranscriptome
Phylogeny18599718Rhizobium multihospitium sp. nov., isolated from multiple legume species native of Xinjiang, China.Han TX, Wang ET, Wu LJ, Chen WF, Gu JG, Gu CT, Tian CF, Chen WXInt J Syst Evol Microbiol10.1099/ijs.0.65568-02008China, DNA, Ribosomal Spacer/genetics, Fabaceae/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/genetics/*isolation & purification, Sequence Homology, Nucleic Acid, Species SpecificityGenetics
Metabolism18657108Glutathione produced by Rhizobium tropici is important to prevent early senescence in common bean nodules.Muglia C, Comai G, Spegazzini E, Riccillo PM, Aguilar OMFEMS Microbiol Lett10.1111/j.1574-6968.2008.01285.x2008*Aging, Bacterial Proteins/genetics, Biomass, Gene Deletion, Gene Expression Profiling, Glutathione/*biosynthesis, Nitrogen Fixation, Phaseolus/chemistry/growth & development/*microbiology/*physiology, Plant Roots/chemistry/microbiology, Rhizobium tropici/*metabolism, Superoxides/analysis, *Symbiosis
Metabolism19260963Different and new Nod factors produced by Rhizobium tropici CIAT899 following Na+ stress.Estevez J, Soria-Diaz ME, de Cordoba FF, Moron B, Manyani H, Gil A, Thomas-Oates J, van Brussel AA, Dardanelli MS, Sousa C, Megias MFEMS Microbiol Lett10.1111/j.1574-6968.2009.01540.x2009Anti-Bacterial Agents/*pharmacology, Artificial Gene Fusion, Chromatography, High Pressure Liquid, Chromatography, Thin Layer, Gene Expression Profiling, Genes, Reporter, Lipopolysaccharides/*biosynthesis, Mass Spectrometry, *Osmotic Pressure, Rhizobium tropici/chemistry/*drug effects/metabolism, Sodium Chloride/*pharmacology, *Stress, Physiological, beta-Galactosidase/genetics/metabolismStress
Metabolism19502401An alternative succinate (2-oxoglutarate) transport system in Rhizobium tropici is induced in nodules of Phaseolus vulgaris.Batista S, Patriarca EJ, Tate R, Martinez-Drets G, Gill PRJ Bacteriol10.1128/JB.00252-092009Bacterial Proteins/genetics/physiology, Ketoglutaric Acids/*metabolism, Molecular Sequence Data, Multigene Family/genetics/physiology, Phaseolus/*microbiology, Rhizobium tropici/*growth & development/*metabolism, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Succinic Acid/*metabolismGenetics
Metabolism19755543Global changes in the transcript and metabolic profiles during symbiotic nitrogen fixation in phosphorus-stressed common bean plants.Hernandez G, Valdes-Lopez O, Ramirez M, Goffard N, Weiller G, Aparicio-Fabre R, Fuentes SI, Erban A, Kopka J, Udvardi MK, Vance CPPlant Physiol10.1104/pp.109.1438422009Computational Biology, Expressed Sequence Tags, Gene Expression Profiling, Gene Expression Regulation, Plant, Gene Library, Genes, Plant, Metabolome, Molecular Sequence Data, Nitrogen Fixation/*genetics, Oligonucleotide Array Sequence Analysis, Phaseolus/genetics/*metabolism, Phosphorus/deficiency/*metabolism, RNA, Plant/metabolism, Rhizobium tropici, Root Nodules, Plant/genetics/metabolism, Sequence Analysis, DNA, *Symbiosis, Transcription Factors/genetics/metabolismTranscriptome
Enzymology19853428Experimental evidences of pSym transfer in a native peanut-associated rhizobia.Ibanez F, Reinoso H, Fabra AMicrobiol Res10.1016/j.micres.2009.08.0042009Arachis/*microbiology/physiology, Bacterial Proteins/*genetics, *Gene Transfer, Horizontal, Phaseolus/*microbiology/physiology, Plasmids/*genetics, Rhizobium/*genetics/isolation & purification/physiology, Root Nodules, Plant/microbiology/physiology, SymbiosisPhylogeny
Phylogeny20633304Biosynthesis of compatible solutes in rhizobial strains isolated from Phaseolus vulgaris nodules in Tunisian fields.Fernandez-Aunion C, Hamouda TB, Iglesias-Guerra F, Argandona M, Reina-Bueno M, Nieto JJ, Aouani ME, Vargas CBMC Microbiol10.1186/1471-2180-10-1922010Molecular Sequence Data, Organic Chemicals/*metabolism, Phaseolus/*microbiology, Phylogeny, Rhizobium/classification/genetics/*isolation & purification/*metabolism, Root Nodules, Plant/*microbiology, Sodium Chloride/metabolism, *Soil Microbiology, TunisiaMetabolism
Metabolism21205018Hydroxylated ornithine lipids increase stress tolerance in Rhizobium tropici CIAT899.Vences-Guzman MA, Guan Z, Ormeno-Orrillo E, Gonzalez-Silva N, Lopez-Lara IM, Martinez-Romero E, Geiger O, Sohlenkamp CMol Microbiol10.1111/j.1365-2958.2011.07535.x2011Bacterial Proteins/genetics/metabolism, Hydroxylation, Lipids/chemistry, Mixed Function Oxygenases/genetics/metabolism, Molecular Structure, Mutation, Ornithine/*analogs & derivatives/chemistry/metabolism, Rhizobium tropici/chemistry/enzymology/genetics/*physiology, Stress, PhysiologicalStress
Phylogeny22017109[Phenotypic and genotypic characterization of twelve rhizobial isolates from different regions of Venezuela].Eugenia Marquina M, Enrique Gonzalez N, Castro YRev Biol Trop2011Genotype, Phenotype, Polymerase Chain Reaction, Polymorphism, Restriction Fragment Length, RNA, Bacterial/*genetics, RNA, Ribosomal, 16S/*genetics, Rhizobium/classification/*genetics/isolation & purification, Sensitivity and Specificity, *Soil Microbiology, VenezuelaGenetics
Metabolism22622392Is genotypic variation of H(+) efflux under P deficiency linked with nodulated-root respiration of N(2) fixing common-bean (Phaseolus vulgaris L.)?Alkama N, Ounane G, Drevon JJJ Plant Physiol10.1016/j.jplph.2012.03.0132012Cell Respiration/genetics/physiology, Genotype, Nitrogen Fixation/genetics/physiology, Phaseolus/genetics/*metabolism, Phosphorus/*deficiency/metabolism, Plant Root Nodulation/genetics/*physiology, Plant Roots/genetics/*metabolismGenetics
Enzymology22771853A phosphoenol pyruvate phosphatase transcript is induced in the root nodule cortex of Phaseolus vulgaris under conditions of phosphorus deficiency.Bargaz A, Ghoulam C, Amenc L, Lazali M, Faghire M, Abadie J, Drevon JJJ Exp Bot10.1093/jxb/ers1512012Acid Phosphatase/*genetics/metabolism, Adaptation, Physiological, Inbreeding, Nitrogen/metabolism, Nitrogen Fixation/genetics, Phaseolus/cytology/*enzymology/genetics/growth & development, Phosphorus/analysis/*deficiency, Plant Proteins/genetics/metabolism, Plant Root Nodulation, Plant Roots/cytology/enzymology/genetics/growth & development, Plant Shoots/cytology/enzymology/genetics/growth & development, RNA, Messenger/genetics, RNA, Plant/genetics, Rhizobium tropici/*physiology, Root Nodules, Plant/cytology/enzymology/genetics/growth & development, Seedlings/cytology/enzymology/genetics/growth & development, SymbiosisMetabolism
Phylogeny22941435Production of extracellular biopolymers and identification of intracellular proteins and Rhizobium tropici.Oliveira J, Figueiredo M, Silva M, Malta M, Vendruscolo C, Almeida HCurr Microbiol10.1007/s00284-012-0211-72012Bacterial Proteins/*chemistry/metabolism, Biopolymers/*biosynthesis/*chemistry, Culture Media, DNA, Bacterial/analysis/genetics, DNA, Ribosomal/analysis/genetics, Electrophoresis, Gel, Two-Dimensional, Mass Spectrometry/methods, RNA, Ribosomal, 16S/genetics, Rhizobium tropici/classification/genetics/growth & development/*metabolism, ViscosityMetabolism
Pathogenicity23216086High NaCl concentrations induce the nod genes of Rhizobium tropici CIAT899 in the absence of flavonoid inducers.Guasch-Vidal B, Estevez J, Dardanelli MS, Soria-Diaz ME, de Cordoba FF, Balog CI, Manyani H, Gil-Serrano A, Thomas-Oates J, Hensbergen PJ, Deelder AM, Megias M, van Brussel AAMol Plant Microbe Interact10.1094/MPMI-09-12-0213-R2013Flavonoids/*pharmacology, Gene Expression Regulation, Plant/drug effects/genetics, Lipopolysaccharides/genetics/*metabolism, Rhizobium tropici/*drug effects/*metabolism, Sodium Chloride/*pharmacologyMetabolism
Genetics23270491Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.).Ormeno-Orrillo E, Menna P, Almeida LG, Ollero FJ, Nicolas MF, Pains Rodrigues E, Shigueyoshi Nakatani A, Silva Batista JS, Oliveira Chueire LM, Souza RC, Ribeiro Vasconcelos AT, Megias M, Hungria M, Martinez-Romero EBMC Genomics10.1186/1471-2164-13-7352012Adaptation, Physiological/*genetics, Agricultural Inoculants/cytology/*genetics/metabolism/physiology, Anti-Bacterial Agents/pharmacology, Biological Transport/genetics, Conserved Sequence/genetics, Drug Resistance, Bacterial/genetics, *Environment, Genome, Plant/genetics, *Genomics, Hydrogen-Ion Concentration, Hydrogenase/genetics, Iron/metabolism, Metals/pharmacology, Multigene Family/genetics, Nitrogen Fixation/genetics, Nitrosation/genetics, Osmotic Pressure, Oxidative Stress/genetics, Phaseolus/*microbiology/physiology, Phylogeny, Plant Growth Regulators/biosynthesis, Plant Root Nodulation/genetics, Plasmids/genetics, Polysaccharides/genetics, Rhizobium tropici/cytology/*genetics/metabolism/*physiology, Species Specificity, Stress, Physiological/genetics, Symbiosis/genetics, TemperaturePhylogeny
Metabolism23575967Differential expression of trehalose 6-P phosphatase and ascorbate peroxidase transcripts in nodule cortex of Phaseolus vulgaris and regulation of nodule O2 permeability.Bargaz A, Lazali M, Amenc L, Abadie J, Ghoulam C, Farissi M, Faghire M, Drevon JJPlanta10.1007/s00425-013-1877-12013Ascorbate Peroxidases/*genetics/metabolism, Electrolytes/metabolism, Fluorescence, Gene Expression Regulation, Plant, Hydrogen Peroxide/metabolism, Nitrogen Fixation/genetics, Oxygen/*metabolism, Permeability, Phaseolus/*enzymology/genetics/growth & development, Phosphoric Monoester Hydrolases/*genetics/metabolism, Phosphorus/metabolism, Root Nodules, Plant/enzymologyEnzymology
23594921Biotechnological potential of rhizobial metabolites to enhance the performance of Bradyrhizobium spp. and Azospirillum brasilense inoculants with soybean and maize.Marks BB, Megias M, Nogueira MA, Hungria MAMB Express10.1186/2191-0855-3-212013
Pathogenicity23652766Fast induction of biosynthetic polysaccharide genes lpxA, lpxE, and rkpI of Rhizobium sp. strain PRF 81 by common bean seed exudates is indicative of a key role in symbiosis.Oliveira LR, Rodrigues EP, Marcelino-Guimaraes FC, Oliveira AL, Hungria MFunct Integr Genomics10.1007/s10142-013-0322-72013Gene Expression Regulation, Bacterial/drug effects, Genes, Bacterial/*genetics, Phaseolus/*chemistry, Phylogeny, Plant Exudates/*pharmacology, Polysaccharides, Bacterial/*biosynthesis/genetics, Rhizobium/drug effects/*genetics, Seeds/*chemistry, Symbiosis/*drug effects/geneticsPhylogeny
Metabolism23677567A phytase gene is overexpressed in root nodules cortex of Phaseolus vulgaris-rhizobia symbiosis under phosphorus deficiency.Lazali M, Zaman-Allah M, Amenc L, Ounane G, Abadie J, Drevon JJPlanta10.1007/s00425-013-1893-120136-Phytase/*genetics/metabolism, *Gene Expression Regulation, Enzymologic, Gene Expression Regulation, Plant, Inbreeding, Nitrogen/analysis/*metabolism, Nitrogen Fixation, Phaseolus/cytology/*enzymology/genetics/physiology, Phosphorus/*deficiency/metabolism, Phylogeny, Plant Proteins/genetics/metabolism, RNA, Messenger/genetics, RNA, Plant/genetics, Rhizobium/*physiology, Root Nodules, Plant/cytology/enzymology/genetics/physiology, Sequence Analysis, DNA, SymbiosisEnzymology
Enzymology23685936Effect of leguminous lectins on the growth of Rhizobium tropici CIAT899.de Vasconcelos MA, Cunha CO, Arruda FV, Carneiro VA, Bastos RM, Mercante FM, do Nascimento KS, Cavada BS, dos Santos RP, Teixeira EHMolecules10.3390/molecules180557922013Fabaceae/*chemistry, *Plant Lectins/chemistry/isolation & purification/pharmacology, Rhizobium tropici/*growth & development, Seeds/*chemistryPhylogeny
23961175Combined inoculation with Glomus intraradices and Rhizobium tropici CIAT899 increases phosphorus use efficiency for symbiotic nitrogen fixation in common bean (Phaseolus vulgaris L.).Tajini F, Trabelsi M, Drevon JJSaudi J Biol Sci10.1016/j.sjbs.2011.11.0032011
Metabolism24035519Discrimination against 15N among recombinant inbred lines of Phaseolus vulgaris L. contrasting in phosphorus use efficiency for nitrogen fixation.Lazali M, Bargaz A, Carlsson G, Ounane SM, Drevon JJJ Plant Physiol10.1016/j.jplph.2013.07.0092013Nitrogen Fixation/*physiology, Nitrogen Isotopes/*metabolism, Phaseolus/*metabolism, Phosphorus/*metabolism
Metabolism24407511Localization of the Bacillus subtilis beta-propeller phytase transcripts in nodulated roots of Phaseolus vulgaris supplied with phytate.Maougal RT, Bargaz A, Sahel C, Amenc L, Djekoun A, Plassard C, Drevon JJPlanta10.1007/s00425-013-2023-920146-Phytase/*genetics/metabolism, Bacillus subtilis/*enzymology/genetics, Nitrogen Fixation, Phaseolus/cytology/growth & development/*microbiology, Phosphorus/*metabolism, Phytic Acid/*metabolism, Plant Root Nodulation, Plant Roots/cytology/growth & development/microbiology, Plant Shoots/cytology/growth & development/microbiology, RNA, Bacterial/genetics/metabolism, Rhizosphere, SymbiosisEnzymology
Metabolism24727788The nodule conductance to O(2) diffusion increases with phytase activity in N(2)-fixing Phaseolus vulgaris L.Lazali M, Drevon JJPlant Physiol Biochem10.1016/j.plaphy.2014.03.02320146-Phytase/*metabolism, Nitrogen Fixation/physiology, Oxygen/*metabolism, Phaseolus/*enzymology/*metabolism, Phosphorus/metabolism, Root Nodules, Plant/*metabolismEnzymology
Pathogenicity25880529Regulatory nodD1 and nodD2 genes of Rhizobium tropici strain CIAT 899 and their roles in the early stages of molecular signaling and host-legume nodulation.del Cerro P, Rolla-Santos AA, Gomes DF, Marks BB, Perez-Montano F, Rodriguez-Carvajal MA, Nakatani AS, Gil-Serrano A, Megias M, Ollero FJ, Hungria MBMC Genomics10.1186/s12864-015-1458-82015Apigenin/pharmacology, Bacterial Proteins/*genetics/metabolism, Fabaceae/growth & development/*microbiology, Gene Expression Regulation, Bacterial/drug effects, *Genes, Bacterial, Indoleacetic Acids/metabolism, Mutation, Nitrogen Fixation/drug effects, Phenotype, Plant Root Nodulation/drug effects, Plant Roots/microbiology, Rhizobium tropici/*genetics/physiology, Sodium Chloride/pharmacology, Symbiosis/geneticsMetabolism
26403588Site-specific distribution and competitive ability of indigenous bean-nodulating rhizobia isolated from organic fields in Minnesota.Wongphatcharachai M, Wang P, Staley C, Chun CL, Ferguson JA, Moncada KM, Sheaffer CC, Sadowsky MJJ Biotechnol10.1016/j.jbiotec.2015.09.0092015DNA, Bacterial/*genetics, Genetic Variation/genetics, Nitrogen Fixation, *Organic Agriculture, Phaseolus/*microbiology, Rhizobium/*genetics, Soil Microbiology
Metabolism26502986Opening the "black box" of nodD3, nodD4 and nodD5 genes of Rhizobium tropici strain CIAT 899.del Cerro P, Rolla-Santos AA, Gomes DF, Marks BB, del Rosario Espuny M, Rodriguez-Carvajal MA, Soria-Diaz ME, Nakatani AS, Hungria M, Ollero FJ, Megias MBMC Genomics10.1186/s12864-015-2033-z2015Bacterial Proteins/*genetics/*metabolism, *Gene Expression Regulation, Bacterial, Rhizobium tropici/*genetics/*metabolism
26567001Maize growth promotion by inoculation with Azospirillum brasilense and metabolites of Rhizobium tropici enriched on lipo-chitooligosaccharides (LCOs).Marks BB, Megias M, Ollero FJ, Nogueira MA, Araujo RS, Hungria MAMB Express10.1186/s13568-015-0154-z2015
Transcriptome26951045RNA-seq analysis of the Rhizobium tropici CIAT 899 transcriptome shows similarities in the activation patterns of symbiotic genes in the presence of apigenin and salt.Perez-Montano F, Del Cerro P, Jimenez-Guerrero I, Lopez-Baena FJ, Cubo MT, Hungria M, Megias M, Ollero FJBMC Genomics10.1186/s12864-016-2543-32016Apigenin/*chemistry, Base Sequence, Gene Expression Regulation, Bacterial, Indoleacetic Acids/metabolism, Operon, Plant Root Nodulation/genetics, Promoter Regions, Genetic, RNA, Bacterial/genetics, Rhizobium tropici/*genetics/physiology, Sequence Analysis, RNA, Sodium Chloride/*chemistry, Stress, Physiological, Symbiosis/*genetics, *TranscriptomeMetabolism
27096734NrcR, a New Transcriptional Regulator of Rhizobium tropici CIAT 899 Involved in the Legume Root-Nodule Symbiosis.Del Cerro P, Rolla-Santos AA, Valderrama-Fernandez R, Gil-Serrano A, Bellogin RA, Gomes DF, Perez-Montano F, Megias M, Hungria M, Ollero FJPLoS One10.1371/journal.pone.01540292016Bacterial Proteins/genetics, Biofilms/growth & development, Genes, Bacterial, Mutation, Nitrogen Fixation, Phaseolus/*microbiology/physiology, Plant Roots/*microbiology/physiology, Plasmids/genetics, Rhizobium tropici/*genetics/*physiology, *Symbiosis, Transcriptional Activation
Stress27485828Genome of Rhizobium leucaenae strains CFN 299(T) and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions.Ormeno-Orrillo E, Gomes DF, Del Cerro P, Vasconcelos AT, Canchaya C, Almeida LG, Mercante FM, Ollero FJ, Megias M, Hungria MBMC Genomics10.1186/s12864-016-2859-z2016Adaptation, Biological/genetics, Environment, *Genes, Bacterial, *Genome, Bacterial, *Genomics/methods, Hot Temperature, Hydrogen-Ion Concentration, Nitrogen Fixation/genetics, Osmotic Pressure, Oxidative Stress/genetics, Phylogeny, Plant Root Nodulation/genetics, Plasmids/genetics, Rhizobium/classification/*genetics, Stress, Physiological/*genetics, Symbiosis/*geneticsGenetics
Phylogeny27777012Characterization of rhizobia isolates obtained from nodules of wild genotypes of common bean.Cardoso AA, Andraus MP, Borba TC, Martin-Didonet CC, Ferreira EPBraz J Microbiol10.1016/j.bjm.2016.09.0022016Adaptation, Biological, Carbon/metabolism, Environment, *Genotype, Phaseolus/classification/*genetics/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizobium/classification/isolation & purification/*physiology, Root Nodules, Plant/*microbiology, Salt Tolerance, *SymbiosisGenetics
Metabolism27845247Indole-3-acetic acid production via the indole-3-pyruvate pathway by plant growth promoter Rhizobium tropici CIAT 899 is strongly inhibited by ammonium.Imada EL, Rolla Dos Santos AAP, Oliveira ALM, Hungria M, Rodrigues EPRes Microbiol10.1016/j.resmic.2016.10.0102016Ammonium Compounds/*pharmacology, Bacterial Proteins/genetics, Biosynthetic Pathways/genetics, Fabaceae/growth & development/physiology, Gene Expression Regulation, Bacterial, Indoleacetic Acids/*metabolism, Indoles/metabolism, Nitrogen Fixation/genetics, Plant Growth Regulators/*metabolism, Promoter Regions, Genetic, Real-Time Polymerase Chain Reaction, Rhizobium tropici/drug effects/*metabolism, SymbiosisBiotechnology
Biotechnology28071798Impact of rhizobial inoculation and reduced N supply on biomass production and biological N2 fixation in common bean grown hydroponically.Kontopoulou CK, Liasis E, Iannetta PP, Tampakaki A, Savvas DJ Sci Food Agric10.1002/jsfa.82022017Agricultural Inoculants/*physiology, Biomass, Fertilizers/analysis, Hydroponics, Nitrogen/*metabolism, *Nitrogen Fixation, Phaseolus/microbiology/*physiology, Rhizobium/*physiology, SymbiosisMetabolism
Metabolism28488698The Rhizobium tropici CIAT 899 NodD2 protein regulates the production of Nod factors under salt stress in a flavonoid-independent manner.Del Cerro P, Perez-Montano F, Gil-Serrano A, Lopez-Baena FJ, Megias M, Hungria M, Ollero FJSci Rep10.1038/srep467122017Chitin/metabolism, Fabaceae/genetics/metabolism/microbiology, Flavonoids/metabolism, Gene Expression Regulation, Bacterial, Glucosamine/*analogs & derivatives/metabolism, Oligosaccharides/*metabolism, Phaseolus/genetics/metabolism/microbiology, Plant Proteins/genetics/*metabolism, Plant Root Nodulation/genetics, Protein Isoforms/genetics/metabolism, Rhizobium tropici/genetics/*metabolism/physiology, Salt Stress, Sulfates/metabolism, Symbiosis/geneticsBiotechnology
29267254Transcriptomic Studies of the Effect of nod Gene-Inducing Molecules in Rhizobia: Different Weapons, One Purpose.Jimenez-Guerrero I, Acosta-Jurado S, Del Cerro P, Navarro-Gomez P, Lopez-Baena FJ, Ollero FJ, Vinardell JM, Perez-Montano FGenes (Basel)10.3390/genes90100012017
Metabolism29327464The expression of an exogenous ACC deaminase by the endophyte Serratia grimesii BXF1 promotes the early nodulation and growth of common bean.Tavares MJ, Nascimento FX, Glick BR, Rossi MJLett Appl Microbiol10.1111/lam.128472018Agricultural Inoculants, Bacterial Proteins/*metabolism, Carbon-Carbon Lyases/*metabolism, Endophytes/metabolism, Ethylenes/metabolism, Phaseolus/*growth & development/microbiology, Plant Root Nodulation/*physiology, Rhizobium tropici/*metabolism, Root Nodules, Plant/*microbiology, Serratia/*enzymology/genetics/metabolism, SymbiosisEnzymology
Phylogeny29571921Genetic diversity and symbiotic effectiveness of Phaseolus vulgaris-nodulating rhizobia in Kenya.Mwenda GM, O'Hara GW, De Meyer SE, Howieson JG, Terpolilli JJSyst Appl Microbiol10.1016/j.syapm.2018.02.0012018Bacterial Proteins/genetics, DNA, Bacterial/genetics, Kenya, N-Acetylglucosaminyltransferases/genetics, Nitrogen Fixation/physiology, Phaseolus/*microbiology, Phylogeny, Plant Root Nodulation/physiology, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, *Rhizobium/classification/genetics/isolation & purification, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Soil Microbiology, Symbiosis/genetics, Transcription Factors/geneticsTranscriptome
Stress29760688Dissecting the Acid Stress Response of Rhizobium tropici CIAT 899.Guerrero-Castro J, Lozano L, Sohlenkamp CFront Microbiol10.3389/fmicb.2018.008462018
Pathogenicity29887272[Responses of the common bean (Phaseolus vulgaris L.) and Rhizobium tropici CIAT899 symbiosystem to induced allelopathy by Ipomoea purpurea L. Roth].Perez-Peralta PJ, Ferrera-Cerrato R, Alarcon A, Trejo-Tellez LI, Cruz-Ortega R, Silva-Rojas HVRev Argent Microbiol10.1016/j.ram.2018.01.0062018*Allelopathy, *Ipomoea, Phaseolus/*drug effects/*microbiology/physiology, Plant Extracts/*pharmacology, Rhizobium tropici/*physiology, *Symbiosis
30393414Response of common bean (Phaseolus vulgaris L.) to nitrogen, phosphorus and rhizobia inoculation across variable soils in Zimbabwe.Chekanai V, Chikowo R, Vanlauwe BAgric Ecosyst Environ10.1016/j.agee.2018.08.0102018
Metabolism30535938Revealing the roles of y4wF and tidC genes in Rhizobium tropici CIAT 899: biosynthesis of indolic compounds and impact on symbiotic properties.Tullio LD, Nakatani AS, Gomes DF, Ollero FJ, Megias M, Hungria MArch Microbiol10.1007/s00203-018-1607-y2018Carboxy-Lyases/genetics/*metabolism, Genes, Bacterial, Indoleacetic Acids/*metabolism, Indoles/metabolism, Mutation, Phaseolus/microbiology/physiology, Polysaccharides, Bacterial/biosynthesis, Rhizobium tropici/chemistry/enzymology/*genetics/*metabolism, SymbiosisEnzymology
Metabolism30877322ACC deaminase plays a major role in Pseudomonas fluorescens YsS6 ability to promote the nodulation of Alpha- and Betaproteobacteria rhizobial strains.Nascimento FX, Tavares MJ, Franck J, Ali S, Glick BR, Rossi MJArch Microbiol10.1007/s00203-019-01649-52019Agricultural Inoculants/physiology, Alphaproteobacteria/*physiology, Bacterial Proteins/genetics/*metabolism, Carbon-Carbon Lyases/genetics/*metabolism, Cupriavidus/*physiology, Ethylenes/metabolism, Mimosa/*microbiology/physiology, Phaseolus/*microbiology/physiology, Plant Root Nodulation, Pseudomonas fluorescens/*enzymology/geneticsEnzymology
Metabolism30917160Osmotic stress activates nif and fix genes and induces the Rhizobium tropici CIAT 899 Nod factor production via NodD2 by up-regulation of the nodA2 operon and the nodA3 gene.Del Cerro P, Megias M, Lopez-Baena FJ, Gil-Serrano A, Perez-Montano F, Ollero FJPLoS One10.1371/journal.pone.02132982019Bacterial Proteins/genetics/*metabolism, Diuretics, Osmotic/pharmacology, *Gene Expression Regulation, Bacterial, High-Throughput Nucleotide Sequencing, Mannitol/pharmacology, *Operon, *Osmotic Pressure, Rhizobium tropici/drug effects/*genetics/growth & development/metabolism, Transcriptional ActivationBiotechnology
Metabolism31081746Rhizobium tropici CIAT 899 copA gene plays a fundamental role in copper tolerance in both free life and symbiosis with Phaseolus vulgaris.Elizalde-Diaz JP, Hernandez-Lucas I, Medina-Aparicio L, Davalos A, Leija A, Alvarado-Affantranger X, Garcia-Garcia JD, Hernandez G, Garcia-de Los Santos AMicrobiology (Reading)10.1099/mic.0.0008032019Bacterial Proteins/genetics/*metabolism, Copper/*metabolism/toxicity, Hydrogen Peroxide/metabolism, Lipid Peroxidation/drug effects, Mutagenesis, Insertional, Mutation, Phaseolus/drug effects/growth & development/metabolism/*microbiology, Plant Root Nodulation/drug effects, Reactive Oxygen Species/metabolism, Rhizobium tropici/genetics/metabolism/*physiology, Root Nodules, Plant/drug effects/growth & development/metabolism/microbiology, SymbiosisPathogenicity
31151153Exo-Metabolites of Phaseolus vulgaris-Nodulating Rhizobial Strains.Montes-Grajales D, Esturau-Escofet N, Esquivel B, Martinez-Romero EMetabolites10.3390/metabo90601052019
31184576Regulation of hsnT, nodF and nodE genes in Rhizobium tropici CIAT 899 and their roles in the synthesis of Nod factors and in the symbiosis.Gomes DF, Tullio LD, Del Cerro P, Nakatani AS, Rolla-Santos AAP, Gil-Serrano A, Megias M, Ollero FJ, Hungria MMicrobiology (Reading)10.1099/mic.0.0008242019Bacterial Proteins/*genetics, Gene Expression Regulation, Bacterial, Genes, Bacterial, Nitrogen Fixation/physiology, Phaseolus/microbiology, Plant Root Nodulation/*genetics, Rhizobium tropici/*genetics, Symbiosis/genetics
Phylogeny31562174Genetic Interaction Studies Reveal Superior Performance of Rhizobium tropici CIAT899 on a Range of Diverse East African Common Bean (Phaseolus vulgaris L.) Genotypes.Gunnabo AH, Geurts R, Wolde-Meskel E, Degefu T, Giller KE, van Heerwaarden JAppl Environ Microbiol10.1128/AEM.01763-192019Gene Pool, *Genotype, Nitrogen, Nitrogen Fixation, Phaseolus/*genetics/growth & development/*microbiology, Phylogeny, Plant Root Nodulation, Rhizobium/classification/genetics/metabolism, Rhizobium tropici/classification/*genetics/metabolism, Symbiosis/geneticsGenetics
31776251A bioinspired approach to engineer seed microenvironment to boost germination and mitigate soil salinity.Zvinavashe AT, Lim E, Sun H, Marelli BProc Natl Acad Sci U S A10.1073/pnas.19159021162019Biocompatible Materials/chemistry, Bioengineering/*methods, Cellular Microenvironment/*physiology, Fibroins/chemistry, Germination/*physiology, Phaseolus, Plant Roots/physiology, Rhizobium, Salt Tolerance/physiology, Seeds/*physiology, Soil Microbiology, Trehalose/chemistry
Metabolism31900709Hydrogen-uptake genes improve symbiotic efficiency in common beans (Phaseolus vulgaris L.).Torres AR, Brito B, Imperial J, Palacios JM, Ciampitti IA, Ruiz-Argueso T, Hungria MAntonie Van Leeuwenhoek10.1007/s10482-019-01381-62020Bacterial Proteins/genetics, Brazil, Genes, Bacterial, Hydrogen/metabolism, Hydrogenase/*genetics, Nitrogen/metabolism, Nitrogen Fixation/genetics, *Phaseolus/growth & development/metabolism/microbiology, *Plants, Genetically Modified, Rhizobium/*genetics, Root Nodules, Plant/genetics, Symbiosis/geneticsEnzymology
Stress32290956Co-inoculation of maize with Azospirillum brasilense and Rhizobium tropici as a strategy to mitigate salinity stress.Fukami J, de la Osa C, Ollero FJ, Megias M, Hungria MFunct Plant Biol10.1071/FP171672018
Metabolism32709725OnfD, an AraC-Type Transcriptional Regulator Encoded by Rhizobium tropici CIAT 899 and Involved in Nod Factor Synthesis and Symbiosis.Del Cerro P, Ayala-Garcia P, Buzon P, Castells-Graells R, Lopez-Baena FJ, Ollero FJ, Perez-Montano FAppl Environ Microbiol10.1128/AEM.01297-202020AraC Transcription Factor/*genetics/metabolism, Bacterial Proteins/biosynthesis/*genetics/metabolism, Lotus/*microbiology, Phaseolus/*microbiology, Rhizobium tropici/*genetics/metabolism, Salt Stress/genetics, Symbiosis/*genetics, Transcriptional Activation/genetics
Phylogeny32804605Rhizobium dioscoreae sp. nov., a plant growth-promoting bacterium isolated from yam (Dioscorea species).Ouyabe M, Tanaka N, Shiwa Y, Fujita N, Kikuno H, Babil P, Shiwachi HInt J Syst Evol Microbiol10.1099/ijsem.0.0043812020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Dioscorea/*microbiology, Endophytes, Fatty Acids/chemistry, Japan, Nitrogen Fixation, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/isolation & purification, Sequence Analysis, DNATranscriptome
Phylogeny34566909Isolation and Characterization of High-Efficiency Rhizobia From Western Kenya Nodulating With Common Bean.Wekesa CS, Furch ACU, Oelmuller RFront Microbiol10.3389/fmicb.2021.6975672021
35056588The nodD1 Gene of Sinorhizobium fredii HH103 Restores Nodulation Capacity on Bean in a Rhizobium tropici CIAT 899 nodD1/nodD2 Mutant, but the Secondary Symbiotic Regulators nolR, nodD2 or syrM Prevent HH103 to Nodulate with This Legume.Fuentes-Romero F, Navarro-Gomez P, Ayala-Garcia P, Moyano-Bravo I, Lopez-Baena FJ, Perez-Montano F, Ollero-Marquez FJ, Acosta-Jurado S, Vinardell JMMicroorganisms10.3390/microorganisms100101392022
Metabolism35318614Priming of defense-related genes in Brassica oleracea var. capitata using concentrated metabolites produced by Rhizobium tropici CIAT 899.Santos IR, Ribeiro DG, Tavora FTPK, Maximiano MR, Rabelo AC, Rios TB, Reis Junior FB, Megias M, Silva LP, Mehta ABraz J Microbiol10.1007/s42770-022-00722-42022*Brassica/metabolism, Plant Leaves/microbiology, *Rhizobium tropici, *Xanthomonas campestris/genetics
Metabolism35901852The Rhizobium tropici CIAT 899 NodD2 protein promotes symbiosis and extends rhizobial nodulation range by constitutive nodulation factor synthesis.Ayala-Garcia P, Jimenez-Guerrero I, Jacott CN, Lopez-Baena FJ, Ollero FJ, Del Cerro P, Perez-Montano FJ Exp Bot10.1093/jxb/erac3252022*Rhizobium tropici/genetics, *Rhizobium, Symbiosis/genetics, Bacterial Proteins/genetics/metabolism, *Phaseolus/metabolism

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68369Automatically annotated from API 20NE
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
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