Strain identifier
BacDive ID: 136171
Type strain:
Species: Sphingobacterium spiritivorum
Strain Designation: Jacob
Strain history: CIP <- 1987, Lab. Ident. Inst. Pasteur, Paris, France: strain R775, Flavobacterium sp. <- Inst. Pasteur, Lyon, France: strain Jacob
NCBI tax ID(s): 258 (species)
General
@ref: 35487
BacDive-ID: 136171
keywords: Bacteria, obligate aerobe, mesophilic, Gram-negative, oval-shaped
description: Sphingobacterium spiritivorum Jacob is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Sphingobacteriaceae.
NCBI tax id
- NCBI tax id: 258
- Matching level: species
strain history
- @ref: 35487
- history: CIP <- 1987, Lab. Ident. Inst. Pasteur, Paris, France: strain R775, Flavobacterium sp. <- Inst. Pasteur, Lyon, France: strain Jacob
doi: 10.13145/bacdive136171.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Sphingobacterium
- species: Sphingobacterium spiritivorum
- full scientific name: Sphingobacterium spiritivorum (Holmes et al. 1982) Yabuuchi et al. 1983
synonyms
@ref synonym 20215 Flavobacterium spiritivorum 20215 Flavobacterium yabuuchiae
@ref: 35487
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Sphingobacterium
species: Sphingobacterium spiritivorum
strain designation: Jacob
type strain: no
Morphology
cell morphology
- @ref: 35487
- gram stain: negative
- cell shape: oval-shaped
- motility: no
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
35487 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
35487 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 | |
35487 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
- @ref: 35487
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 35487
- oxygen tolerance: obligate aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
35487 | 17632 | nitrate | - | reduction |
35487 | 16301 | nitrite | - | reduction |
metabolite production
- @ref: 35487
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
35487 | oxidase | + | |
35487 | catalase | + | 1.11.1.6 |
35487 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | + | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
35487 | - | + | + | + | - | + | + | + | + | - | + | + | + | + | - | + | + | + | - | + |
Isolation, sampling and environmental information
isolation
@ref | geographic location | country | origin.country | continent | sample type | isolation date |
---|---|---|---|---|---|---|
35487 | Lyon | France | FRA | Europe | ||
35487 | Lyon | France | FRA | Europe | Human, Pleural liquid | 1973 |
Safety information
risk assessment
- @ref: 35487
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
External links
@ref: 35487
culture collection no.: CIP 103100
straininfo link
- @ref: 93402
- straininfo: 13940
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
35487 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103100 | Collection of Institut Pasteur (CIP 103100) | |
68382 | Automatically annotated from API zym | |||
93402 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID13940.1 |