Strain identifier

BacDive ID: 136141

Type strain: No

Species: Paenibacillus polymyxa

Strain Designation: NRS-279, 8277

Strain history: CIP <- 1952, ATCC, Bacillus polymyxa <- N.R. Smith: strain NRS-279 <- Difco Lab.: strain 8277

NCBI tax ID(s): 1406 (species)

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General

@ref: 35448

BacDive-ID: 136141

keywords: Bacteria, facultative anaerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Paenibacillus polymyxa NRS-279 is a facultative anaerobe, spore-forming, mesophilic bacterium of the family Paenibacillaceae.

NCBI tax id

  • NCBI tax id: 1406
  • Matching level: species

strain history

  • @ref: 35448
  • history: CIP <- 1952, ATCC, Bacillus polymyxa <- N.R. Smith: strain NRS-279 <- Difco Lab.: strain 8277

doi: 10.13145/bacdive136141.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus polymyxa
  • full scientific name: Paenibacillus polymyxa (Prazmowski 1880) Ash et al. 1994

  • synonyms

    @refsynonym
    20215Clostridium polymyxa
    20215Aerobacillus polymyxa
    20215Paenibacillus jamilae
    20215Bacillus polymyxa

@ref: 35448

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus polymyxa

strain designation: NRS-279, 8277

type strain: no

Morphology

cell morphology

  • @ref: 35448
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 35448
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35448MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
35448CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
35448CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
35448positivegrowth30
35448positivegrowth30-37
35448nogrowth55

Physiology and metabolism

oxygen tolerance

  • @ref: 35448
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 35448
  • spore formation: yes

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3544817632nitrate+reduction
3544816301nitrite-reduction
3544817632nitrate+respiration
68371Potassium 5-ketogluconate-builds acid from
6837118305arbutin+builds acid from
6837127613amygdalin+builds acid from
68371320061methyl alpha-D-glucopyranoside+builds acid from
6837117754glycerol+builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose+builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen+builds acid from
6837128017starch+builds acid from
6837116634raffinose+builds acid from
683716731melezitose-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose+builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin+builds acid from
683714853esculin+builds acid from
6837159640N-acetylglucosamine-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol+builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside+builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose+builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose+builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from

metabolite production

  • @ref: 35448
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-galactosidase+3.2.1.22
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-chymotrypsin+3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
35448oxidase-
35448alcohol dehydrogenase-1.1.1.1
35448catalase+1.11.1.6
35448lysine decarboxylase-4.1.1.18
35448ornithine decarboxylase-4.1.1.17
35448urease-3.5.1.5
68382leucine arylamidase-3.4.11.1

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
35448--++-----++-++-++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
35448+--+++--+++++-+/---+--+-+++++++++++/--+++-++------+/---

Safety information

risk assessment

  • @ref: 35448
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 35448

culture collection no.: CIP A39, ATCC 7070, NRRL B-368

straininfo link

  • @ref: 93377
  • straininfo: 45473

literature

  • topic: Pathogenicity
  • Pubmed-ID: 23756568
  • title: Required characteristics of Paenibacillus polymyxa JB-0501 as potential probiotic.
  • authors: Naghmouchi K, Baah J, Cudennec B, Drider D
  • journal: Arch Microbiol
  • DOI: 10.1007/s00203-013-0905-7
  • year: 2013
  • mesh: Antibiosis, Bacterial Adhesion, Bile Acids and Salts/pharmacology, Caco-2 Cells, Carbohydrate Metabolism, Escherichia coli/growth & development, Gastric Acid, Humans, Hydrogen Peroxide/pharmacology, Hydrogen-Ion Concentration, Muramidase/pharmacology, Paenibacillus/growth & development/*physiology, *Probiotics
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35448Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20A39Collection of Institut Pasteur (CIP A39)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
93377Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID45473.1