Strain identifier

BacDive ID: 136131

Type strain: No

Species: Campylobacter lari

Strain history: CIP <- 1986, NCTC <- 1982, M.B. Skirrow: strain WRI 921/79

NCBI tax ID(s): 201 (species)

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General

@ref: 35437

BacDive-ID: 136131

keywords: genome sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Campylobacter lari CIP 102723 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from Dog feces.

NCBI tax id

  • NCBI tax id: 201
  • Matching level: species

strain history

@refhistory
67770CIP 102723 <-- NCTC 11457 <-- N. B. Skirrow WRI 921/79.
35437CIP <- 1986, NCTC <- 1982, M.B. Skirrow: strain WRI 921/79

doi: 10.13145/bacdive136131.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter lari
  • full scientific name: Campylobacter lari corrig. Benjamin et al. 1984

  • synonyms

    • @ref: 20215
    • synonym: Campylobacter laridis

@ref: 35437

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter lari

type strain: no

Morphology

cell morphology

  • @ref: 35437
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35437MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
35437CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
35437positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 35437
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3543717632nitrate+reduction
3543716301nitrite-reduction

metabolite production

  • @ref: 35437
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
35437oxidase+
35437catalase+1.11.1.6
35437urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
35437--++-+---------+----

Isolation, sampling and environmental information

isolation

@refsample typeisolation date
67770Dog feces
35437Animal, Dog, feces1979

Safety information

risk assessment

  • @ref: 35437
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Campylobacter sp. LMG 7929
  • accession: GCA_024723595
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2735749

GC content

  • @ref: 67770
  • GC-content: 31.4
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes55.983no
gram-positiveno98.685no
anaerobicno83.344no
aerobicno97.877no
halophileno80.832no
spore-formingno96.817no
glucose-fermentno84.303no
thermophileno72.687no
glucose-utilno82.857no
motileyes86.117no

External links

@ref: 35437

culture collection no.: CIP 102723, ATCC 35222, NCTC 11457, JCM 14868, CCUG 12773, CCUG 23948, LMG 7929, WRI 921/79

straininfo link

  • @ref: 93368
  • straininfo: 1531

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35437Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102723Collection of Institut Pasteur (CIP 102723)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
93368Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID1531.1