Strain identifier
BacDive ID: 13600
Type strain:
Species: Rhizobium leguminosarum
Strain Designation: 3D1k5
Strain history: <- ATCC <- L.W. Erdman, 3D1k5
NCBI tax ID(s): 384 (species)
version 8.1 (current version)
General
@ref: 9159
BacDive-ID: 13600
DSM-Number: 30138
keywords: Bacteria, mesophilic
description: Rhizobium leguminosarum 3D1k5 is a mesophilic bacterium of the family Rhizobiaceae.
NCBI tax id
- NCBI tax id: 384
- Matching level: species
strain history
- @ref: 9159
- history: <- ATCC <- L.W. Erdman, 3D1k5
doi: 10.13145/bacdive13600.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Rhizobium
- species: Rhizobium leguminosarum
- full scientific name: Rhizobium leguminosarum (Frank 1879) Frank 1889 (Approved Lists 1980)
synonyms
@ref synonym 20215 Schinzia leguminosarum 20215 Rhizobium trifolii
@ref: 9159
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Rhizobiaceae
genus: Rhizobium
species: Rhizobium leguminosarum
full scientific name: Rhizobium leguminosarum (Frank 1879) Frank 1889 emend. Ramírez-Bahena et al. 2008
strain designation: 3D1k5
type strain: no
Culture and growth conditions
culture medium
- @ref: 9159
- name: RHIZOBIUM MEDIUM (DSMZ Medium 98)
- growth: yes
- link: https://mediadive.dsmz.de/medium/98
- composition: Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water
culture temp
- @ref: 9159
- growth: positive
- type: growth
- temperature: 26
- range: mesophilic
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | - | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | + | hydrolysis |
68369 | 16199 | urea | + | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | gelatinase | - | |
68369 | beta-glucosidase | + | 3.2.1.21 |
68369 | urease | + | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9159 | - | - | - | - | + | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - |
9159 | - | - | - | - | + | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - |
Safety information
risk assessment
- @ref: 9159
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 9159
culture collection no.: DSM 30138, ATCC 10328
straininfo link
- @ref: 82787
- straininfo: 35207
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
9159 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30138) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-30138 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
68369 | Automatically annotated from API 20NE | |||
82787 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID35207.1 | StrainInfo: A central database for resolving microbial strain identifiers |